Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 9.1e-296 1019.6 561 100.0
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 3.5e-37 160.6 604 29.3
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 1.9e-27 128.3 218 41.3
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 1.4e-25 122.1 216 39.8
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 2.0e-24 118.2 208 42.3
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 1.1e-19 102.4 591 28.3
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 4.3e-19 100.5 543 28.0
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 1.6e-18 98.6 157 44.6
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 8.0e-18 96.3 195 38.5
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 1.4e-17 95.5 547 26.9
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 5.2e-17 93.6 141 46.1
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 6.8e-17 93.2 139 43.2
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 6.8e-17 93.2 265 34.3
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 2.6e-16 91.3 499 28.1
ECA247G3667 Erigeron canadensis HOM05D011323 ORTHO05D010674 4.4e-16 90.5 131 45.0
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 5.8e-16 90.1 159 38.4
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 2.9e-15 87.8 516 28.7
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 6.4e-15 86.7 207 38.2
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 1.1e-14 85.9 281 33.5
PGSC0003DMG400006365 Solanum tuberosum HOM05D011323 ORTHO05D010674 1.4e-14 85.5 528 25.8
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 3.2e-14 84.3 490 27.1
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 5.4e-14 83.6 491 26.3
Dinv41063 Davidia involucrata HOM05D011323 ORTHO05D010674 1.2e-13 82.4 177 40.1
Lsat_1_v5_gn_1_4921 Lactuca sativa HOM05D011323 ORTHO05D010674 1.2e-13 82.4 200 36.5
TAR628G0624 Trochodendron aralioides HOM05D013130 ORTHO05D010674 1.6e-13 82.0 581 24.6
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 4.6e-13 80.5 271 28.4
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 7.8e-13 79.7 160 33.1
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 7.8e-13 79.7 489 27.2
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 1.0e-12 79.3 528 26.1
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 1.0e-12 79.3 101 49.5
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 1.3e-12 79.0 479 26.9
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 1.7e-12 78.6 184 35.9
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 1.7e-12 78.6 603 25.2
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 5.0e-12 77.0 261 31.8
AT1G76740 Arabidopsis thaliana HOM05D010491 ORTHO05D012559 1.1e-11 75.9 310 28.7
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 3.3e-11 74.3 487 26.5
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 5.6e-11 73.6 151 36.4
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 9.5e-11 72.8 486 27.0
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 1.2e-10 72.4 503 23.5
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 4.7e-10 70.5 159 36.5
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 4.7e-10 70.5 137 38.0
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 1.8e-09 68.6 168 35.7
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 2.3e-09 68.2 283 28.6
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 2.3e-09 68.2 131 36.6
Actinidia10638 Actinidia chinensis HOM05D016043 ORTHO05D015789 2.0e-08 65.1 490 25.7
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 2.6e-08 64.7 528 26.1
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 3.4e-08 64.3 99 38.4
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 7.5e-08 63.2 93 39.8
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 9.9e-08 62.8 519 24.9
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 1.3e-07 62.4 195 33.3
Dinv42169 Davidia involucrata HOM05D023276 ORTHO05D026395 2.2e-07 61.6 38 76.3
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 2.9e-07 61.2 373 27.9
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 2.9e-07 61.2 78 44.9
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 2.9e-07 61.2 129 37.2
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 6.4e-07 60.1 95 40.0
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 8.3e-07 59.7 194 29.4
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 1.1e-06 59.3 66 50.0
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 1.1e-06 59.3 164 33.5
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.1e-06 59.3 112 37.5
BolC6t40120H Brassica oleracea HOM05D010491 ORTHO05D012559 1.4e-06 58.9 435 27.6
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.4e-06 58.9 116 36.2
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.4e-06 58.9 116 36.2
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.4e-06 58.9 263 29.7
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 1.9e-06 58.5 99 39.4
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.9e-06 58.5 262 26.3
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 2.4e-06 58.2 78 50.0
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 2.4e-06 58.2 161 36.6
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 2.4e-06 58.2 78 47.4
Atru.chr13.2071 Acer truncatum HOM05D036810 ORTHO05D030759 3.2e-06 57.8 528 25.2
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 3.2e-06 57.8 44 59.1
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 4.1e-06 57.4 555 25.8
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 5.4e-06 57.0 79 41.8
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 5.4e-06 57.0 115 34.8
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 7.1e-06 56.6 78 39.7
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 7.1e-06 56.6 78 39.7
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 7.1e-06 56.6 108 33.3
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 7.1e-06 56.6 78 39.7
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 7.1e-06 56.6 78 39.7
Carub.0002s2365 Capsella rubella HOM05D010491 ORTHO05D012559 7.1e-06 56.6 42 59.5
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 7.1e-06 56.6 78 39.7
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 7.1e-06 56.6 78 42.3
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 7.1e-06 56.6 66 47.0
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 9.2e-06 56.2 78 39.7
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 9.2e-06 56.2 62 48.4
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 9.2e-06 56.2 191 27.7


User provided reference genes

Program Settings