Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 1.8e-100 369.4 200 100.0
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 1.1e-73 280.4 200 74.5
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 1.7e-71 273.1 198 72.7
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 2.9e-71 272.3 200 71.0
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.2e-70 268.9 198 69.2
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 7.2e-70 267.7 200 70.5
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 2.1e-69 266.2 198 70.7
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 2.3e-68 262.7 200 67.5
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 2.3e-68 262.7 200 69.5
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 2.3e-68 262.7 200 69.5
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 6.7e-68 261.2 205 68.3
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 6.7e-68 261.2 200 67.5
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 1.5e-67 260.0 200 67.5
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 2.0e-67 259.6 198 69.2
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 3.3e-67 258.8 198 68.7
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 1.7e-66 256.5 200 68.0
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 2.2e-66 256.1 198 69.7
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 2.8e-66 255.8 199 71.9
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 1.4e-65 253.4 198 67.2
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 2.4e-65 252.7 199 69.8
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 5.3e-65 251.5 198 67.7
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 5.3e-65 251.5 200 66.5
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 1.6e-64 250.0 200 67.0
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 2.0e-64 249.6 200 68.0
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 3.5e-64 248.8 192 68.8
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 5.9e-64 248.1 198 63.6
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 1.7e-63 246.5 198 66.2
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 1.7e-63 246.5 198 67.7
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 2.2e-63 246.1 198 66.2
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 3.8e-63 245.4 190 67.9
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 5.0e-63 245.0 199 66.8
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 8.5e-63 244.2 199 66.8
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.5e-62 243.4 199 66.3
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 7.2e-62 241.1 198 65.2
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 7.2e-62 241.1 198 64.6
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 2.1e-61 239.6 199 67.3
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 3.6e-61 238.8 206 64.1
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 1.8e-60 236.5 198 62.6
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 4.4e-59 231.9 198 61.1
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 5.7e-59 231.5 204 60.8
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 9.7e-59 230.7 198 62.1
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 2.8e-58 229.2 185 63.2
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 2.8e-58 229.2 185 63.8
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 3.7e-58 228.8 198 60.6
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 4.8e-58 228.4 186 66.7
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 1.4e-57 226.9 198 60.6
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 1.4e-57 226.9 198 63.1
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 1.8e-57 226.5 204 59.3
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 4.1e-57 225.3 170 70.0
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 5.3e-57 224.9 198 60.1
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 7.0e-57 224.6 200 59.5
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 9.1e-57 224.2 185 65.9
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 2.7e-56 222.6 198 60.6
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 3.5e-56 222.2 200 57.5
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 1.0e-55 220.7 198 59.1
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 2.9e-55 219.2 197 56.3
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.9e-55 219.2 194 60.8
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 6.5e-55 218.0 237 53.6
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.1e-54 217.2 200 56.0
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 1.1e-54 217.2 186 62.4
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 1.6e-53 213.4 200 59.5
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 1.6e-53 213.4 185 61.6
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 2.1e-53 213.0 197 55.8
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 2.1e-53 213.0 199 58.3
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 3.6e-53 212.2 199 58.3
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 4.7e-53 211.8 193 59.1
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 4.7e-53 211.8 200 57.0
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 6.1e-53 211.5 200 58.5
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 1.0e-52 210.7 198 55.1
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 2.3e-52 209.5 186 59.7
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 6.8e-52 208.0 200 57.0
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 1.5e-51 206.8 202 55.4
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 2.6e-51 206.1 202 55.9
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 3.4e-51 205.7 200 55.5
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 5.7e-51 204.9 185 60.0
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.2e-50 203.0 233 52.4
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 2.8e-50 202.6 200 55.0
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 8.3e-50 201.1 200 54.0
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 8.3e-50 201.1 180 58.3
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 1.4e-49 200.3 199 56.3
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 1.4e-49 200.3 155 68.4
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.4e-49 200.3 185 60.0
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 1.8e-49 199.9 200 55.0
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 3.1e-49 199.1 200 53.0
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 5.4e-49 198.4 200 54.0
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 7.0e-49 198.0 205 51.2
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 1.2e-48 197.2 200 53.0
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 1.2e-48 197.2 171 62.6
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 1.2e-45 187.2 185 54.6
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 1.0e-44 184.1 248 43.5
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 5.2e-44 181.8 198 51.0
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 3.4e-43 179.1 198 49.0
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 3.7e-42 175.6 175 55.4
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 1.1e-41 174.1 145 64.1
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 3.5e-40 169.1 162 56.8
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 4.3e-38 162.2 146 60.3
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 1.2e-37 160.6 187 51.9
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 2.8e-37 159.5 193 47.2
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 6.1e-37 158.3 140 62.1
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.8e-36 156.8 117 73.5
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 2.0e-35 153.3 186 43.5
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 2.6e-35 152.9 185 48.1
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 8.3e-34 147.9 155 49.0
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 2.4e-33 146.4 145 57.2
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 7.0e-33 144.8 146 52.7
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 7.8e-32 141.4 155 47.7
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 7.8e-32 141.4 111 70.3
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.0e-31 141.0 151 51.7
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 5.0e-31 138.7 110 70.0
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.1e-28 131.0 89 74.2
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 2.0e-27 126.7 110 58.2
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 4.1e-25 119.0 191 37.7
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 2.7e-24 116.3 84 70.2
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 1.9e-22 110.2 174 44.3
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 7.3e-22 108.2 105 53.3
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 1.6e-21 107.1 155 39.4
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 4.4e-19 99.0 127 48.0
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 4.9e-18 95.5 185 31.9
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 6.4e-18 95.1 84 60.7
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 1.3e-15 87.4 61 68.9
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 3.1e-12 76.3 167 33.5
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 2.1e-08 63.5 89 46.1
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.6e-08 62.4 56 60.7
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 6.6e-07 58.5 37 83.8
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 3.3e-06 56.2 45 62.2


User provided reference genes

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