Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g14550 Coffea canephora HOM05D006114 ORTHO05D007609 5.3e-223 777.3 380 100.0
PGSC0003DMG400000797 Solanum tuberosum HOM05D006114 ORTHO05D007609 2.2e-152 542.7 386 71.2
Solyc04g071130.1 Solanum lycopersicum HOM05D006114 ORTHO05D007609 7.1e-151 537.7 386 71.0
Sopen04g027070 Solanum pennellii HOM05D006114 ORTHO05D007609 7.1e-151 537.7 386 71.0
Nitab4.5_0006608g0010 Nicotiana tabacum HOM05D006114 ORTHO05D007609 9.2e-151 537.3 398 69.6
Nitab4.5_0000032g0440 Nicotiana tabacum HOM05D006114 ORTHO05D007609 3.3e-148 528.9 388 69.6
CAN.G175.3 Capsicum annuum HOM05D006114 ORTHO05D007609 2.8e-147 525.8 391 68.8
Migut.C01010 Erythranthe guttata HOM05D006114 ORTHO05D007609 6.6e-141 504.6 397 64.5
Dinv41097 Davidia involucrata HOM05D006114 ORTHO05D007609 4.9e-136 488.4 371 66.8
TAR381G1603 Trochodendron aralioides HOM05D006114 ORTHO05D007609 1.9e-135 486.5 381 63.3
CANSAT25G1256 Cannabis sativa HOM05D006114 ORTHO05D007609 3.2e-135 485.7 383 63.2
CSS0028797 Camellia sinensis var. sinensis HOM05D006114 ORTHO05D007609 1.2e-134 483.8 383 63.2
MD05G1021300 Malus domestica HOM05D006114 ORTHO05D007609 2.1e-134 483.0 376 65.4
Lj7A371T45 Lonicera japonica HOM05D006114 ORTHO05D007609 1.3e-133 480.3 382 64.7
SalBow7G1400 Salvia bowleyana HOM05D006114 ORTHO05D007609 3.9e-133 478.8 380 65.0
Lsat_1_v5_gn_1_8460 Lactuca sativa HOM05D006114 ORTHO05D007609 6.7e-133 478.0 378 64.0
Hma1.2p1_0616F.1_g190010 Hydrangea macrophylla HOM05D006114 ORTHO05D007609 1.1e-132 477.2 383 64.0
Nn1g06119 Nelumbo nucifera HOM05D006114 ORTHO05D007609 1.9e-132 476.5 381 63.5
Aqoxy5G02132 Aquilegia oxysepala HOM05D006114 ORTHO05D007609 5.6e-132 474.9 385 62.3
MSTRG.1356 Avicennia marina HOM05D006114 ORTHO05D007609 5.6e-132 474.9 395 60.5
Prupe.8G025000 Prunus persica HOM05D006114 ORTHO05D007609 9.6e-132 474.2 374 64.2
TAR625G1556 Trochodendron aralioides HOM05D006114 ORTHO05D007609 1.3e-131 473.8 380 61.8
Oeu032982.1 Olea europaea HOM05D006114 ORTHO05D007609 3.1e-130 469.2 399 61.2
CiPaw.16G014300 Carya illinoinensis HOM05D006114 ORTHO05D007609 1.2e-129 467.2 383 62.7
MD10G1022100 Malus domestica HOM05D006114 ORTHO05D007609 1.2e-129 467.2 376 63.3
SpUn0346_0010 Schrenkiella parvula HOM05D006114 ORTHO05D007609 1.5e-129 466.8 390 62.3
AL2G37050 Arabidopsis lyrata HOM05D006114 ORTHO05D007609 3.4e-129 465.7 391 61.1
Cfa018335 Carpinus fangiana HOM05D006114 ORTHO05D007609 3.4e-129 465.7 381 61.2
RcHm_v2.0_Chr6g0276341 Rosa chinensis HOM05D006114 ORTHO05D007609 5.8e-129 464.9 378 63.2
MSTRG.22368 Avicennia marina HOM05D006114 ORTHO05D007609 7.6e-129 464.5 393 61.1
Potri.002G069900 Populus trichocarpa HOM05D006114 ORTHO05D007609 9.9e-129 464.2 390 60.0
BcaB02g07084 Brassica carinata HOM05D006114 ORTHO05D007609 1.3e-128 463.8 382 62.6
Gohir.D05G271900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 1.3e-128 463.8 390 60.8
Gorai.009G284900 Gossypium raimondii HOM05D006114 ORTHO05D007609 1.3e-128 463.8 390 60.8
Gohir.A05G269900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 1.7e-128 463.4 390 60.5
BcaC08g45501 Brassica carinata HOM05D006114 ORTHO05D007609 3.8e-128 462.2 382 62.8
Haze_17740 Corylus avellana HOM05D006114 ORTHO05D007609 6.4e-128 461.5 384 60.7
COL.COLO4_24672 Corchorus olitorius HOM05D006114 ORTHO05D007609 8.4e-128 461.1 392 61.2
AT1G76920 Arabidopsis thaliana HOM05D006114 ORTHO05D007609 1.1e-127 460.7 391 60.6
C06p31720 Brassica napus HOM05D006114 ORTHO05D007609 1.4e-127 460.3 382 62.6
BolC6t38302H Brassica oleracea HOM05D006114 ORTHO05D007609 1.4e-127 460.3 382 62.6
BraA07t30466Z Brassica rapa HOM05D006114 ORTHO05D007609 2.4e-127 459.5 382 62.6
Ciclev10001576m.g Citrus clementina HOM05D006114 ORTHO05D007609 3.2e-127 459.1 381 61.9
Actinidia15143 Actinidia chinensis HOM05D006114 ORTHO05D007609 5.5e-127 458.4 383 59.5
BcaB05g25019 Brassica carinata HOM05D006114 ORTHO05D007609 5.5e-127 458.4 381 62.2
A07p28250 Brassica napus HOM05D006114 ORTHO05D007609 5.5e-127 458.4 382 62.3
Carub.0002s2378 Capsella rubella HOM05D006114 ORTHO05D007609 5.5e-127 458.4 394 60.9
Thhalv10019824m.g Eutrema salsugineum HOM05D006114 ORTHO05D007609 9.3e-127 457.6 385 61.6
Potri.005G190400 Populus trichocarpa HOM05D006114 ORTHO05D007609 1.2e-126 457.2 386 59.8
THA.LOC104812044 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 1.2e-126 457.2 394 60.4
unitig_749.g13920 Utricularia gibba HOM05D006114 ORTHO05D007609 6.0e-126 454.9 396 59.1
Sed0024386 Sechium edule HOM05D006114 ORTHO05D007609 7.9e-126 454.5 379 60.7
Aa31LG4G6950 Aethionema arabicum HOM05D006114 ORTHO05D007609 1.8e-125 453.4 389 60.9
Cpa.g.sc21.182 Carica papaya HOM05D006114 ORTHO05D007609 3.9e-125 452.2 387 60.5
Manes.02G177800 Manihot esculenta HOM05D006114 ORTHO05D007609 6.7e-125 451.4 412 58.5
TWI32G1226 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 8.7e-125 451.1 384 60.4
Lalb_Chr19g0130321 Lupinus albus HOM05D006114 ORTHO05D007609 1.1e-124 450.7 389 59.6
Eucgr.F02716 Eucalyptus grandis HOM05D006114 ORTHO05D007609 1.9e-124 449.9 400 56.8
Duzib116G0820 Durio zibethinus HOM05D006114 ORTHO05D007609 2.5e-124 449.5 395 59.5
TWI34G0188 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 2.5e-124 449.5 386 59.3
THA.LOC104813707 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 4.3e-124 448.7 389 58.9
Atru.chr13.2189 Acer truncatum HOM05D006114 ORTHO05D007609 5.6e-124 448.4 381 60.4
Thecc.08G149100 Theobroma cacao HOM05D006114 ORTHO05D007609 5.6e-124 448.4 389 59.1
QL02p024207 Quercus lobata HOM05D006114 ORTHO05D007609 1.6e-123 446.8 382 60.5
Rhsim05G0182400 Rhododendron simsii HOM05D006114 ORTHO05D007609 1.6e-123 446.8 387 61.0
AUR62039242 Chenopodium quinoa HOM05D006114 ORTHO05D007609 2.8e-123 446.0 399 58.4
EL10Ac7g15790 Beta vulgaris HOM05D006114 ORTHO05D007609 4.8e-123 445.3 391 58.8
Duzib041G0274 Durio zibethinus HOM05D006114 ORTHO05D007609 1.1e-122 444.1 391 60.1
FAN15G0766 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.8e-122 443.4 380 61.8
Phvul.004G097500 Phaseolus vulgaris HOM05D006114 ORTHO05D007609 2.4e-122 443.0 385 58.2
Hund26709 Selenicereus undatus HOM05D006114 ORTHO05D000105 6.9e-122 441.4 399 57.6
Ca_27292_v3 Cicer arietinum L. HOM05D006114 ORTHO05D007609 9.0e-122 441.0 398 57.5
VMungo0464G2055 Vigna mungo HOM05D006114 ORTHO05D007609 9.0e-122 441.0 385 58.4
DCAR_010096 Daucus carota HOM05D006114 ORTHO05D007609 1.2e-121 440.7 384 60.4
PGR042G1057 Punica granatum HOM05D006114 ORTHO05D007609 1.2e-121 440.7 390 59.5
PGR122G0006 Punica granatum HOM05D006114 ORTHO05D007609 1.2e-121 440.7 390 59.5
Lj2g0010896 Lotus japonicus HOM05D006114 ORTHO05D007609 4.9e-120 435.3 389 58.1
Medtr6g034935 Medicago truncatula HOM05D006114 ORTHO05D007609 6.5e-120 434.9 396 56.8
Sabra02G0054600 Salix brachista HOM05D006114 ORTHO05D007609 1.1e-119 434.1 363 59.8
Ah.08g215970 Amaranthus hybridus HOM05D006114 ORTHO05D007609 3.2e-119 432.6 393 57.8
PSO675G2834 Papaver somniferum HOM05D006114 ORTHO05D007609 9.7e-116 421.0 381 55.4
PSO541G3056 Papaver somniferum HOM05D006114 ORTHO05D007609 1.6e-115 420.2 384 54.7
Glyma.02G083400 Glycine max HOM05D006114 ORTHO05D007609 5.3e-114 415.2 383 55.9
HanXRQChr02g0039921 Helianthus annuus HOM05D006114 ORTHO05D007609 5.0e-112 408.7 305 65.6
Peaxi162Scf00263g01414 Petunia axillaris HOM05D006114 ORTHO05D007609 1.2e-110 404.1 287 69.3
Sed0010814 Sechium edule HOM05D006114 ORTHO05D007609 2.1e-110 403.3 381 56.2
FvH4_2g14200 Fragaria vesca HOM05D006114 ORTHO05D007609 3.6e-110 402.5 307 65.1
FAN24G0263 Fragaria x ananassa HOM05D006114 ORTHO05D007609 6.9e-106 388.3 295 65.4
Lj7A371T46 Lonicera japonica HOM05D006114 ORTHO05D007609 2.7e-102 376.3 383 54.8
Migut.N03218 Erythranthe guttata HOM05D006114 ORTHO05D007609 9.7e-100 367.9 398 51.3
HPP92_009302 Vanilla planifolia HOM05D006114 ORTHO05D007609 5.3e-98 362.1 395 52.4
CARHR070420 Cardamine hirsuta HOM05D006114 ORTHO05D007609 1.6e-94 350.5 309 60.8
ECA247G0840 Erigeron canadensis HOM05D006114 ORTHO05D007609 1.6e-94 350.5 252 67.9
Medtr6g049050 Medicago truncatula HOM05D006114 ORTHO05D007609 1.1e-92 344.4 378 48.7
MBI17_g34067_MAGBIO Magnolia biondii HOM05D006114 ORTHO05D007609 3.5e-89 332.8 335 53.7
Zm00001eb434300 Zea mays HOM05D006114 ORTHO05D007609 9.7e-84 314.7 407 45.2
Zm00001eb076050 Zea mays HOM05D006114 ORTHO05D007609 1.2e-81 307.8 398 44.5
FAN27G1342 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.3e-75 287.7 205 68.3
Oeu046020.2 Olea europaea HOM05D006114 ORTHO05D007609 2.8e-75 286.6 396 42.9
GSVIVG01034899001 Vitis vinifera HOM05D006114 ORTHO05D007609 6.3e-75 285.4 381 44.1
Psat0s3019g0080 Pisum sativum HOM05D006114 ORTHO05D007609 1.3e-72 277.7 219 62.6
Os04g0686700 Oryza sativa ssp. japonica HOM05D006114 ORTHO05D007609 3.8e-72 276.2 321 48.0
AUR62009796 Chenopodium quinoa HOM05D006114 ORTHO05D007609 4.2e-71 272.7 218 59.6
unitig_26.g9904 Utricularia gibba HOM05D006114 ORTHO05D007609 4.7e-70 269.2 262 54.6
TPR.G36696 Trifolium pratense HOM05D006114 ORTHO05D007609 2.3e-61 240.4 168 67.3
SGA_v2.0_scaffold48G17978 Striga asiatica HOM05D006114 ORTHO05D007609 1.2e-54 218.0 160 65.0
SEGI_30218 Sequoiadendron giganteum HOM05D006114 ORTHO05D007609 5.8e-52 209.1 384 36.5
Zm00001eb268540 Zea mays HOM05D006114 ORTHO05D007609 3.2e-42 176.8 187 48.1
unitig_26.g9903 Utricularia gibba HOM05D006114 ORTHO05D007609 2.7e-41 173.7 113 71.7
AUR62039241 Chenopodium quinoa HOM05D006114 ORTHO05D007609 4.2e-34 149.8 209 43.1
AUR62009795 Chenopodium quinoa HOM05D006114 ORTHO05D007609 7.8e-33 145.6 211 40.8
ATR0772G199 Amborella trichopoda HOM05D006114 ORTHO05D007609 1.1e-29 135.2 205 40.0
FAN14G0378 Fragaria x ananassa HOM05D006114 ORTHO05D007609 2.4e-29 134.0 129 56.6
Zm00001eb182860 Zea mays HOM05D006114 ORTHO05D007609 2.1e-25 120.9 146 43.8
CDE08G0205 Ceratophyllum demersum HOM05D006114 ORTHO05D007609 4.0e-21 106.7 101 56.4
FvH4_3g14282 Fragaria vesca HOM05D006114 ORTHO05D007609 3.4e-20 103.6 95 57.9
Zm00001eb243390 Zea mays HOM05D006114 ORTHO05D007609 3.8e-19 100.1 94 50.0
Zm00001eb346130 Zea mays HOM05D003599 ORTHO05D004221 3.8e-19 100.1 94 51.1
Zm00001eb268570 Zea mays HOM05D006114 ORTHO05D007609 3.2e-18 97.1 84 59.5
Zm00001eb268560 Zea mays HOM05D006114 ORTHO05D007609 3.9e-16 90.1 104 45.2
VMungo1383G2819 Vigna mungo HOM05D006114 ORTHO05D007609 3.3e-15 87.0 75 58.7
Zm00001eb080980 Zea mays HOM05D006114 ORTHO05D007609 5.6e-15 86.3 105 42.9
Zm00001eb080990 Zea mays HOM05D006114 ORTHO05D007609 1.6e-14 84.7 76 48.7
TAR381G0769 Trochodendron aralioides HOM05D003005 ORTHO05D004939 1.8e-13 81.3 363 24.5
MSTRG.25314 Avicennia marina HOM05D006114 ORTHO05D007609 3.1e-13 80.5 78 56.4
Ca_06955_v3 Cicer arietinum L. HOM05D004302 ORTHO05D004939 3.1e-13 80.5 374 24.3
Pp3c7_9930 Physcomitrium patens HOM05D002809 ORTHO05D004939 1.5e-12 78.2 375 22.9
SGA_v2.0_scaffold17G07917 Striga asiatica HOM05D006114 ORTHO05D007609 2.6e-12 77.4 143 44.1
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 3.4e-12 77.0 376 23.9
arahy.Tifrunner.gnm1.ann1.0BPN3L Arachis hypogaea HOM05D000034 ORTHO05D000037 4.5e-12 76.6 76 47.4
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 5.8e-12 76.3 408 22.8
Mapoly0137s0025 Marchantia polymorpha HOM05D004302 ORTHO05D004939 1.0e-11 75.5 380 23.7
EL10Ac5g12860 Beta vulgaris HOM05D003005 ORTHO05D004170 3.8e-11 73.6 412 24.0
Pp3c14_23730 Physcomitrium patens HOM05D002809 ORTHO05D004563 2.5e-10 70.9 395 23.3
Migut.K00952 Erythranthe guttata HOM05D002809 ORTHO05D004563 5.5e-10 69.7 318 25.8
FvH4_6g34681 Fragaria vesca HOM05D006114 ORTHO05D007609 1.2e-09 68.6 65 55.4
Mapoly0019s0019 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.2e-09 68.6 405 23.2
Mapoly0101s0058 Marchantia polymorpha HOM05D002809 ORTHO05D004939 2.1e-09 67.8 383 23.0
AagrBONN_evm.TU.Sc2ySwM_368.489 Anthoceros agrestis HOM05D005500 ORTHO05D006906 3.5e-09 67.0 392 23.0
Psat7g088280 Pisum sativum HOM05D005977 ORTHO05D007546 3.5e-09 67.0 399 23.8
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 6.0e-09 66.2 387 23.0
Cpa.g.c34911 Carica papaya HOM05D007423 ORTHO05D009091 3.0e-08 63.9 324 25.6
SEGI_38976 Sequoiadendron giganteum HOM05D002809 ORTHO05D004939 5.1e-08 63.2 363 22.9
CiPaw.04G106700 Carya illinoinensis HOM05D007853 ORTHO05D009873 6.7e-08 62.8 370 26.2
ATR0561G142 Amborella trichopoda HOM05D002809 ORTHO05D004563 1.1e-07 62.0 363 22.0
Sc20g0003450 Simmondsia chinensis HOM05D006114 ORTHO05D007609 1.1e-07 62.0 46 60.9
Nitab4.5_0006574g0050 Nicotiana tabacum HOM05D007753 ORTHO05D009385 2.5e-07 60.8 380 22.6
Rhsim08G0215900 Rhododendron simsii HOM05D007753 ORTHO05D009385 2.5e-07 60.8 387 22.5
Pp3c22_15730 Physcomitrium patens HOM05D003005 ORTHO05D009385 3.3e-07 60.5 355 23.4
PGSC0003DMG400000606 Solanum tuberosum HOM05D007753 ORTHO05D009385 3.3e-07 60.5 385 24.7
SGA_v2.0_scaffold175G39328 Striga asiatica HOM05D005977 ORTHO05D007546 5.7e-07 59.7 366 22.4
vmacro18967 Vaccinium macrocarpon HOM05D007753 ORTHO05D009385 7.4e-07 59.3 370 22.4
ClCG09G009130 Citrullus lanatus HOM05D007853 ORTHO05D009873 9.6e-07 58.9 373 25.5
Nn5g30581 Nelumbo nucifera HOM05D007423 ORTHO05D009091 9.6e-07 58.9 331 26.9
arahy.Tifrunner.gnm1.ann1.M43JJC Arachis hypogaea HOM05D007753 ORTHO05D009385 1.3e-06 58.5 144 28.5
arahy.Tifrunner.gnm1.ann1.PVCU19 Arachis hypogaea HOM05D007753 ORTHO05D009385 1.3e-06 58.5 144 27.8
CANSAT35G0189 Cannabis sativa HOM05D005977 ORTHO05D007546 1.6e-06 58.2 428 23.6
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 2.1e-06 57.8 118 36.4
Pp3c2_350 Physcomitrium patens HOM05D002809 ORTHO05D030462 2.8e-06 57.4 150 28.0
QL09p044713 Quercus lobata HOM05D007853 ORTHO05D009873 2.8e-06 57.4 377 25.5
Solyc03g116480.1 Solanum lycopersicum HOM05D007753 ORTHO05D009385 2.8e-06 57.4 374 25.4
FvH4_6g34680 Fragaria vesca HOM05D006114 ORTHO05D007609 4.8e-06 56.6 49 61.2


User provided reference genes

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