Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 5.5e-159 564.3 295 100.0
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 4.5e-60 235.7 304 47.4
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 2.8e-54 216.5 296 47.6
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 4.5e-52 209.1 336 43.2
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 4.5e-52 209.1 321 44.2
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 7.6e-52 208.4 320 44.4
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 7.6e-52 208.4 372 39.5
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.3e-51 207.6 326 41.7
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 6.5e-51 205.3 325 41.5
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.8e-48 197.2 301 44.9
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 9.7e-47 191.4 302 41.7
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 6.9e-45 185.3 295 42.0
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 1.5e-44 184.1 370 38.6
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 7.7e-44 181.8 330 38.8
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 2.5e-42 176.8 248 44.8
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 4.2e-42 176.0 294 41.8
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 5.5e-42 175.6 299 38.5
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 9.4e-42 174.9 320 38.4
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 1.8e-40 170.6 377 36.3
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 5.1e-40 169.1 204 47.1
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 8.8e-40 168.3 327 37.0
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.5e-39 167.5 235 46.8
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 2.5e-39 166.8 205 47.3
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 9.7e-39 164.9 254 43.3
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.3e-38 164.5 258 43.0
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 2.8e-38 163.3 322 36.6
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 2.8e-38 163.3 191 48.7
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 3.7e-38 162.9 258 42.6
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 4.8e-38 162.5 306 40.2
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 6.3e-38 162.2 173 50.9
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 1.1e-37 161.4 194 48.5
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 1.1e-37 161.4 264 39.0
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 1.4e-37 161.0 301 42.2
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 3.1e-37 159.8 265 41.5
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 5.3e-37 159.1 189 50.3
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 5.9e-36 155.6 154 54.5
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 7.7e-36 155.2 185 47.0
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 1.0e-35 154.8 273 41.0
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 1.3e-35 154.5 164 51.8
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 1.7e-35 154.1 293 35.8
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 1.7e-35 154.1 191 47.6
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 2.2e-35 153.7 264 40.2
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 2.2e-35 153.7 262 41.6
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 3.8e-35 152.9 175 46.9
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 5.0e-35 152.5 218 44.0
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 1.9e-34 150.6 186 46.8
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.9e-34 150.6 291 38.8
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 2.5e-34 150.2 294 36.7
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 2.5e-34 150.2 175 49.7
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 2.5e-34 150.2 286 36.7
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 3.2e-34 149.8 194 47.4
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 5.5e-34 149.1 218 42.7
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 5.5e-34 149.1 261 39.1
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 5.5e-34 149.1 298 36.6
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.2e-33 147.9 269 38.3
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 1.6e-33 147.5 344 34.6
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 3.6e-33 146.4 300 36.3
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 3.6e-33 146.4 164 51.2
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 6.1e-33 145.6 273 37.0
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 7.9e-33 145.2 173 48.0
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 1.4e-32 144.4 173 46.8
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 2.3e-32 143.7 260 36.9
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 3.0e-32 143.3 139 52.5
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 5.1e-32 142.5 144 49.3
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 5.1e-32 142.5 151 50.3
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 5.1e-32 142.5 186 45.7
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 5.1e-32 142.5 255 37.3
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 6.7e-32 142.1 163 48.5
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 8.8e-32 141.7 142 51.4
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 8.8e-32 141.7 254 38.6
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 8.8e-32 141.7 187 41.7
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 1.1e-31 141.4 294 35.4
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 1.5e-31 141.0 255 38.0
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 1.5e-31 141.0 143 49.7
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.0e-31 140.6 272 36.0
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 2.6e-31 140.2 243 37.9
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 4.4e-31 139.4 201 43.3
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 5.7e-31 139.0 148 47.3
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 9.7e-31 138.3 148 47.3
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 9.7e-31 138.3 257 36.2
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 1.3e-30 137.9 262 37.0
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.2e-30 137.1 275 34.9
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 2.8e-30 136.7 267 39.0
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 4.8e-30 136.0 132 52.3
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 4.8e-30 136.0 148 46.6
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 6.3e-30 135.6 161 44.7
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 8.2e-30 135.2 142 48.6
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 8.2e-30 135.2 271 35.1
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 8.2e-30 135.2 270 38.5
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 4.1e-29 132.9 258 35.3
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 7.0e-29 132.1 204 41.2
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 7.0e-29 132.1 275 37.1
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 1.5e-28 131.0 156 44.9
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 1.5e-28 131.0 150 51.3
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 1.5e-28 131.0 241 40.7
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 2.0e-28 130.6 140 47.9
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 5.9e-28 129.0 193 42.0
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 7.7e-28 128.6 295 32.2
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.3e-27 127.9 146 45.9
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 3.8e-27 126.3 253 38.7
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 5.0e-27 125.9 141 47.5
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 1.1e-26 124.8 395 28.6
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 1.5e-26 124.4 135 47.4
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 1.9e-26 124.0 206 38.3
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 7.2e-26 122.1 133 47.4
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 7.2e-26 122.1 299 28.4
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 2.7e-25 120.2 265 35.5
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 6.1e-25 119.0 278 34.9
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 8.8e-24 115.2 264 35.6
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.5e-23 114.4 199 37.7
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 2.0e-23 114.0 142 42.3
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 3.3e-23 113.2 193 38.9
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 6.3e-22 109.0 151 42.4
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 1.1e-21 108.2 279 36.2
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.8e-21 107.5 240 36.7
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 5.9e-20 102.4 148 41.2
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 5.0e-19 99.4 96 54.2
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 9.4e-18 95.1 271 33.6
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 3.6e-17 93.2 224 36.2
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 3.0e-16 90.1 246 31.7
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 4.0e-16 89.7 223 32.3
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 4.0e-16 89.7 223 31.8
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 7.5e-15 85.5 134 41.0
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 4.8e-14 82.8 235 31.9
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 2.4e-13 80.5 106 42.5
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 3.5e-12 76.6 90 45.6
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 6.5e-11 72.4 66 51.5
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 5.5e-10 69.3 145 36.6
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 5.5e-10 69.3 171 36.3
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 4.7e-09 66.2 252 24.2
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 8.8e-08 62.0 106 39.6
Zm00001eb139380 Zea mays HOM05D005242 ORTHO05D006778 2.6e-07 60.5 131 27.5
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 5.7e-07 59.3 181 34.8
SEGI_01966 Sequoiadendron giganteum HOM05D005242 ORTHO05D006778 1.7e-06 57.8 103 34.0
Atru.chr12.278 Acer truncatum HOM05D000136 ORTHO05D000080 8.3e-06 55.5 104 32.7
Psat7g115480 Pisum sativum HOM05D000136 ORTHO05D000080 8.3e-06 55.5 108 32.4


User provided reference genes

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