Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 2.1e-79 298.9 142 100.0
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 5.4e-19 98.2 58 79.3
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 5.4e-19 98.2 65 72.3
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 2.0e-18 96.3 82 54.9
Cc08_g05390 Coffea canephora HOM05D000034 ORTHO05D000037 2.7e-18 95.9 65 72.3
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 2.7e-18 95.9 58 77.6
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 7.7e-18 94.4 58 74.1
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 1.0e-17 94.0 58 74.1
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 1.3e-17 93.6 58 74.1
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.7e-17 93.2 58 72.4
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.7e-17 93.2 58 72.4
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.3e-17 92.8 61 68.9
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 2.3e-17 92.8 58 74.1
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 2.3e-17 92.8 58 74.1
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.3e-17 92.8 58 72.4
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 2.3e-17 92.8 58 72.4
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 2.3e-17 92.8 58 72.4
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 2.3e-17 92.8 63 66.7
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 2.9e-17 92.4 58 70.7
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 2.9e-17 92.4 58 70.7
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 3.8e-17 92.0 58 72.4
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 5.0e-17 91.7 58 70.7
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 5.0e-17 91.7 58 70.7
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 5.0e-17 91.7 58 72.4
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 5.0e-17 91.7 58 70.7
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 5.0e-17 91.7 58 70.7
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 5.0e-17 91.7 58 72.4
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 5.0e-17 91.7 58 72.4
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 5.0e-17 91.7 58 72.4
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 6.5e-17 91.3 58 72.4
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 6.5e-17 91.3 58 70.7
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 8.6e-17 90.9 58 70.7
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 8.6e-17 90.9 58 69.0
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 8.6e-17 90.9 58 69.0
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 8.6e-17 90.9 58 70.7
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 8.6e-17 90.9 58 69.0
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 8.6e-17 90.9 58 70.7
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 8.6e-17 90.9 58 70.7
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 8.6e-17 90.9 58 69.0
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 8.6e-17 90.9 58 69.0
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 8.6e-17 90.9 58 70.7
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 8.6e-17 90.9 58 69.0
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 1.1e-16 90.5 58 69.0
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 1.1e-16 90.5 58 69.0
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.1e-16 90.5 58 70.7
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.1e-16 90.5 58 70.7
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 1.1e-16 90.5 60 70.0
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 1.1e-16 90.5 58 70.7
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 1.5e-16 90.1 58 70.7
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 1.5e-16 90.1 58 67.2
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.5e-16 90.1 58 67.2
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.5e-16 90.1 58 67.2
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.5e-16 90.1 58 69.0
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.5e-16 90.1 58 69.0
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 1.5e-16 90.1 58 70.7
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 1.5e-16 90.1 58 67.2
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 1.5e-16 90.1 58 67.2
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 1.5e-16 90.1 58 69.0
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 1.5e-16 90.1 58 70.7
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 1.9e-16 89.7 58 70.7
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 1.9e-16 89.7 58 69.0
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.9e-16 89.7 58 67.2
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.9e-16 89.7 58 69.0
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.9e-16 89.7 58 69.0
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 1.9e-16 89.7 58 70.7
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 1.9e-16 89.7 58 70.7
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.9e-16 89.7 58 67.2
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.9e-16 89.7 58 67.2
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 1.9e-16 89.7 58 67.2
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 1.9e-16 89.7 58 70.7
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 1.9e-16 89.7 58 70.7
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 1.9e-16 89.7 58 70.7
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 1.9e-16 89.7 58 69.0
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 2.5e-16 89.4 58 69.0
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 3.3e-16 89.0 58 67.2
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 4.2e-16 88.6 58 67.2
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 4.2e-16 88.6 58 67.2
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 4.2e-16 88.6 58 69.0
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 4.2e-16 88.6 58 67.2
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 4.2e-16 88.6 64 65.6
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 5.5e-16 88.2 58 69.0
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 5.5e-16 88.2 58 69.0
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 5.5e-16 88.2 58 69.0
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 5.5e-16 88.2 58 69.0
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 5.5e-16 88.2 58 69.0
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 7.2e-16 87.8 58 67.2
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 7.2e-16 87.8 58 69.0
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 7.2e-16 87.8 58 69.0
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 9.5e-16 87.4 58 67.2
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 9.5e-16 87.4 58 67.2
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 9.5e-16 87.4 58 67.2
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 1.2e-15 87.0 58 65.5
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 1.2e-15 87.0 58 69.0
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.2e-15 87.0 58 69.0
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 1.2e-15 87.0 58 67.2
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.2e-15 87.0 58 69.0
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 1.6e-15 86.7 58 67.2
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 1.6e-15 86.7 58 67.2
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.6e-15 86.7 58 67.2
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.6e-15 86.7 58 69.0
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 2.1e-15 86.3 58 69.0
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 2.1e-15 86.3 58 67.2
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 2.8e-15 85.9 58 65.5
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 2.8e-15 85.9 58 67.2
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 2.8e-15 85.9 58 65.5
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 2.8e-15 85.9 58 67.2
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 3.6e-15 85.5 58 67.2
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 3.6e-15 85.5 58 65.5
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 3.6e-15 85.5 58 67.2
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 4.7e-15 85.1 58 65.5
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 4.7e-15 85.1 58 63.8
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 8.0e-15 84.3 57 66.7
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 8.0e-15 84.3 58 65.5
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 8.0e-15 84.3 58 65.5
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 1.0e-14 84.0 57 64.9
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 1.4e-14 83.6 58 65.5
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 2.3e-14 82.8 58 63.8
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 4.0e-14 82.0 58 65.5
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 8.9e-14 80.9 58 65.5
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.5e-13 80.1 58 60.3
Cc02_g10140 Coffea canephora HOM05D000034 ORTHO05D000037 1.1e-11 73.9 65 58.5
Cc06_g20430 Coffea canephora HOM05D000034 ORTHO05D000037 1.4e-11 73.6 65 58.5
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 2.4e-11 72.8 61 59.0
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 5.4e-11 71.6 58 55.2
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 5.4e-11 71.6 78 47.4
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 1.2e-10 70.5 58 55.2
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 7.8e-10 67.8 70 47.1
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 1.0e-09 67.4 58 55.2
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.9e-08 63.2 70 47.1
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 3.3e-08 62.4 33 84.8


User provided reference genes

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