Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 2.0e-194 682.2 334 100.0
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 3.5e-146 521.9 351 73.8
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 1.8e-145 519.6 327 75.5
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 1.5e-144 516.5 328 74.4
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 2.5e-144 515.8 328 75.6
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 1.3e-143 513.5 328 75.3
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 3.7e-143 511.9 327 74.6
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 3.1e-142 508.8 328 75.0
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 3.4e-141 505.4 327 74.3
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 4.5e-141 505.0 321 74.5
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.0e-140 503.8 321 74.1
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 1.0e-140 503.8 327 73.7
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 1.0e-140 503.8 328 75.6
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.7e-140 503.1 328 75.0
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 2.2e-140 502.7 328 74.7
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 3.8e-140 501.9 327 72.8
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 1.1e-139 500.4 322 77.0
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.9e-139 499.6 327 72.5
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 1.2e-138 496.9 329 72.3
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 1.6e-138 496.5 327 72.5
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 2.7e-138 495.7 320 74.7
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 3.5e-138 495.4 320 75.0
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 1.1e-136 490.3 327 71.6
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 1.1e-136 490.3 322 73.3
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 3.3e-136 488.8 286 81.5
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 5.7e-136 488.0 326 72.7
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 7.4e-136 487.6 326 71.5
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 9.6e-136 487.3 326 70.6
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 9.6e-136 487.3 326 70.2
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 1.6e-135 486.5 328 70.7
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 2.1e-135 486.1 326 72.4
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 2.1e-135 486.1 328 72.0
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 3.7e-135 485.3 327 70.9
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 6.3e-135 484.6 321 74.1
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 8.2e-135 484.2 320 72.8
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 8.2e-135 484.2 326 72.4
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 1.1e-134 483.8 324 72.5
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 1.8e-134 483.0 326 71.2
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 1.8e-134 483.0 326 69.9
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 1.8e-134 483.0 328 71.6
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 3.1e-134 482.3 328 69.8
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 4.1e-134 481.9 328 72.0
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 4.1e-134 481.9 324 72.5
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 4.1e-134 481.9 341 69.8
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 6.9e-134 481.1 327 71.6
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 1.2e-133 480.3 327 71.6
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 1.5e-133 479.9 350 68.3
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 1.5e-133 479.9 328 71.6
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 5.8e-133 478.0 327 70.9
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 5.8e-133 478.0 326 69.9
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 5.8e-133 478.0 326 69.6
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 5.8e-133 478.0 326 69.9
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 2.2e-132 476.1 327 70.3
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 6.5e-132 474.6 295 75.3
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 6.5e-132 474.6 321 72.3
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.4e-131 473.4 321 69.8
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.9e-131 473.0 327 70.3
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 2.5e-131 472.6 320 70.3
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 5.5e-131 471.5 327 69.7
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 9.3e-131 470.7 335 68.7
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 9.3e-131 470.7 322 69.9
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 1.3e-129 466.8 325 67.7
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.8e-129 466.5 359 65.2
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 5.1e-129 464.9 328 68.0
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 6.7e-129 464.5 328 68.0
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 8.7e-129 464.2 327 69.4
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 1.5e-128 463.4 327 69.1
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 1.5e-128 463.4 332 65.7
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 1.9e-128 463.0 328 68.9
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 4.3e-128 461.8 327 69.7
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 5.7e-128 461.5 323 70.6
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 1.6e-127 459.9 304 72.7
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 2.4e-126 456.1 327 68.2
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 2.4e-126 456.1 383 61.4
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 5.3e-126 454.9 327 67.6
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 5.3e-126 454.9 351 65.2
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 9.0e-126 454.1 321 67.3
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 1.2e-125 453.8 325 68.0
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 2.6e-125 452.6 327 67.0
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 2.6e-125 452.6 326 66.9
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 1.3e-124 450.3 324 67.0
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 1.7e-124 449.9 327 67.6
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 8.5e-124 447.6 327 67.0
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 8.5e-124 447.6 330 67.3
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 8.5e-124 447.6 330 67.3
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 1.9e-123 446.4 321 66.0
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 1.9e-123 446.4 330 67.3
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 7.2e-123 444.5 330 66.1
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 9.4e-123 444.1 329 65.7
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 2.7e-122 442.6 334 64.7
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 4.6e-122 441.8 323 67.2
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 6.1e-122 441.4 330 66.4
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 1.0e-121 440.7 326 64.7
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 3.0e-121 439.1 320 67.5
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 8.8e-121 437.6 234 86.3
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 4.3e-120 435.3 334 64.4
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 2.2e-119 433.0 313 66.8
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 1.4e-118 430.3 323 65.3
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 4.1e-118 428.7 327 63.3
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 1.5e-117 426.8 319 63.6
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 2.6e-117 426.0 247 78.5
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 7.9e-114 414.5 321 62.6
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 1.0e-113 414.1 330 61.5
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 5.9e-109 398.3 324 61.7
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.1e-107 394.0 247 72.5
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 5.5e-107 391.7 247 71.7
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 2.0e-104 383.3 319 62.1
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 3.3e-104 382.5 310 59.4
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 6.8e-97 358.2 330 56.7
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 2.6e-96 356.3 233 75.1
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 4.5e-93 345.5 322 53.7
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 2.2e-92 343.2 232 69.8
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 1.0e-84 317.8 246 66.7
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 1.3e-84 317.4 244 61.5
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 8.6e-84 314.7 319 50.5
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 6.8e-81 305.1 222 67.1
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 6.8e-81 305.1 222 67.1
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 9.8e-80 301.2 223 69.1
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 1.6e-77 293.9 216 69.4
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 2.8e-66 256.5 173 70.5
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 5.4e-62 242.3 163 69.9
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 9.2e-62 241.5 246 49.2
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 4.9e-55 219.2 205 52.7
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 5.1e-52 209.1 188 56.4
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 6.6e-52 208.8 188 55.9
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 8.9e-49 198.4 221 50.2
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 6.4e-47 192.2 168 58.9
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 8.7e-28 128.6 79 75.9
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 4.5e-24 116.3 73 74.0
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 4.5e-16 89.7 57 64.9
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 1.5e-08 64.7 53 58.5


User provided reference genes

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