Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g13840 Coffea canephora HOM05D006438 ORTHO05D007998 5.4e-235 817.4 445 100.0
Dinv32596 Davidia involucrata HOM05D006438 ORTHO05D007998 6.2e-138 495.0 382 70.7
Nitab4.5_0013402g0010 Nicotiana tabacum HOM05D006438 ORTHO05D007998 1.4e-137 493.8 340 76.5
Peaxi162Scf00786g00012 Petunia axillaris HOM05D006438 ORTHO05D007998 1.4e-137 493.8 344 76.7
Nitab4.5_0000172g0480 Nicotiana tabacum HOM05D006438 ORTHO05D007998 4.4e-136 488.8 340 75.6
PGSC0003DMG400000230 Solanum tuberosum HOM05D006438 ORTHO05D007998 1.3e-135 487.3 361 72.6
Migut.B01878 Erythranthe guttata HOM05D006438 ORTHO05D007998 1.7e-135 486.9 406 67.2
CSS0029538 Camellia sinensis var. sinensis HOM05D006438 ORTHO05D007998 2.9e-135 486.1 373 74.5
Lj7A500T115 Lonicera japonica HOM05D006438 ORTHO05D007998 1.1e-134 484.2 377 70.8
CSS0017951 Camellia sinensis var. sinensis HOM05D006438 ORTHO05D007998 3.2e-134 482.6 373 74.0
Actinidia20246 Actinidia chinensis HOM05D006438 ORTHO05D007998 1.6e-133 480.3 365 70.1
Solyc01g096030.4 Solanum lycopersicum HOM05D006438 ORTHO05D007998 2.7e-133 479.6 372 70.2
MSTRG.17348 Avicennia marina HOM05D006438 ORTHO05D007998 3.5e-133 479.2 400 66.5
Sopen01g039750 Solanum pennellii HOM05D006438 ORTHO05D007998 7.8e-133 478.0 372 70.2
CAN.G1415.26 Capsicum annuum HOM05D006438 ORTHO05D007998 1.0e-132 477.6 351 72.9
SGA_v2.0_scaffold5G03022 Striga asiatica HOM05D006438 ORTHO05D007998 8.6e-132 474.6 370 68.6
CiPaw.02G041100 Carya illinoinensis HOM05D006438 ORTHO05D007998 2.5e-131 473.0 371 69.8
vmacro13165 Vaccinium macrocarpon HOM05D006438 ORTHO05D007998 4.3e-131 472.2 365 70.4
Rhsim07G0003900 Rhododendron simsii HOM05D006438 ORTHO05D007998 4.0e-129 465.7 371 72.2
QL11p022848 Quercus lobata HOM05D006438 ORTHO05D007998 9.9e-128 461.1 378 66.1
Glyma.03G257800 Glycine max HOM05D006438 ORTHO05D007998 1.3e-127 460.7 364 68.1
TWI59G0942 Tripterygium wilfordii HOM05D006438 ORTHO05D007998 1.3e-127 460.7 380 66.3
Cfa003796 Carpinus fangiana HOM05D006438 ORTHO05D007998 1.7e-127 460.3 402 68.4
Manes.13G078900 Manihot esculenta HOM05D006438 ORTHO05D007998 1.7e-127 460.3 375 68.0
DCAR_005393 Daucus carota HOM05D006438 ORTHO05D007998 3.7e-127 459.1 373 66.5
Hund27192 Selenicereus undatus HOM05D006438 ORTHO05D007998 3.7e-127 459.1 368 67.1
Haze_15664 Corylus avellana HOM05D006438 ORTHO05D007998 1.9e-126 456.8 402 68.7
Prupe.2G189300 Prunus persica HOM05D006438 ORTHO05D007998 7.1e-126 454.9 372 66.7
QL06p050047 Quercus lobata HOM05D006438 ORTHO05D007998 7.1e-126 454.9 381 65.4
Glyma.19G256300 Glycine max HOM05D006438 ORTHO05D007998 1.2e-125 454.1 364 67.9
Phvul.006G113600 Phaseolus vulgaris HOM05D006438 ORTHO05D007998 7.8e-125 451.4 381 64.8
Lj1g0004073 Lotus japonicus HOM05D006438 ORTHO05D007998 1.3e-124 450.7 383 64.5
GSVIVG01027157001 Vitis vinifera HOM05D006438 ORTHO05D007998 3.9e-124 449.1 381 68.5
Duzib138G1266 Durio zibethinus HOM05D006438 ORTHO05D007998 1.5e-123 447.2 388 63.9
Potri.002G171600 Populus trichocarpa HOM05D006438 ORTHO05D007998 1.5e-123 447.2 368 71.5
Thecc.01G341800 Theobroma cacao HOM05D006438 ORTHO05D007998 3.3e-123 446.0 375 66.1
ECA236G2598 Erigeron canadensis HOM05D006438 ORTHO05D007998 5.6e-123 445.3 357 68.6
HanXRQChr04g0120541 Helianthus annuus HOM05D006438 ORTHO05D007998 1.2e-122 444.1 344 73.3
Gorai.004G151600 Gossypium raimondii HOM05D006438 ORTHO05D007998 1.6e-122 443.7 384 64.3
SalBow3G2635 Salvia bowleyana HOM05D006438 ORTHO05D007998 1.6e-122 443.7 339 69.9
Gohir.D08G146100 Gossypium hirsutum HOM05D006438 ORTHO05D007998 2.8e-122 443.0 384 63.8
Ciclev10019221m.g Citrus clementina HOM05D006438 ORTHO05D007998 3.6e-122 442.6 381 68.8
Lalb_Chr18g0044491 Lupinus albus HOM05D006438 ORTHO05D007998 4.7e-122 442.2 389 63.2
arahy.Tifrunner.gnm1.ann1.TZA1ET Arachis hypogaea HOM05D006438 ORTHO05D007998 6.2e-122 441.8 379 64.9
arahy.Tifrunner.gnm1.ann1.QN4XTT Arachis hypogaea HOM05D006438 ORTHO05D007998 1.4e-121 440.7 379 64.9
Gohir.A08G125100 Gossypium hirsutum HOM05D006438 ORTHO05D007998 1.8e-121 440.3 384 63.5
EL10Ac1g00261 Beta vulgaris HOM05D006438 ORTHO05D007998 3.1e-121 439.5 374 65.0
Sc23g0002070 Simmondsia chinensis HOM05D006438 ORTHO05D007998 4.0e-121 439.1 365 66.6
Ca_09510_v3 Cicer arietinum L. HOM05D006438 ORTHO05D007998 6.8e-121 438.3 407 60.4
THA.LOC104817364 Tarenaya hassleriana HOM05D006438 ORTHO05D007998 6.8e-121 438.3 347 68.0
Ca_30059_v3 Cicer arietinum L. HOM05D006438 ORTHO05D007998 1.5e-120 437.2 390 61.8
TPR.G4682 Trifolium pratense HOM05D006438 ORTHO05D007998 2.6e-120 436.4 372 63.7
VMungo0540G1767 Vigna mungo HOM05D006438 ORTHO05D007998 7.6e-120 434.9 356 65.2
Lsat_1_v5_gn_7_1020 Lactuca sativa HOM05D006438 ORTHO05D007998 9.9e-120 434.5 347 70.3
MD07G1150500 Malus domestica HOM05D006438 ORTHO05D007998 9.9e-120 434.5 370 64.3
RcHm_v2.0_Chr1g0359811 Rosa chinensis HOM05D006438 ORTHO05D007998 9.9e-120 434.5 349 65.9
Ah.05g179490 Amaranthus hybridus HOM05D006438 ORTHO05D007998 2.2e-119 433.3 398 65.3
AUR62023453 Chenopodium quinoa HOM05D006438 ORTHO05D007998 4.9e-119 432.2 390 62.3
Nn3g18981 Nelumbo nucifera HOM05D006438 ORTHO05D007998 8.4e-119 431.4 365 63.6
Actinidia10144 Actinidia chinensis HOM05D006438 ORTHO05D007998 2.4e-118 429.9 334 70.4
Nn1g00253 Nelumbo nucifera HOM05D006438 ORTHO05D007998 1.2e-117 427.6 370 65.9
FAN10G0107 Fragaria x ananassa HOM05D006438 ORTHO05D007998 2.7e-117 426.4 380 62.4
FAN10G3447 Fragaria x ananassa HOM05D006438 ORTHO05D007998 2.7e-117 426.4 380 62.6
Sabra14G0072800 Salix brachista HOM05D006438 ORTHO05D007998 4.6e-117 425.6 379 66.0
Manes.13G077643 Manihot esculenta HOM05D006438 ORTHO05D007998 1.3e-116 424.1 375 64.3
MD01G1082100 Malus domestica HOM05D006438 ORTHO05D007998 1.5e-115 420.6 371 61.7
Eucgr.A01924 Eucalyptus grandis HOM05D006438 ORTHO05D007998 1.9e-115 420.2 368 62.2
FvH4_7g16650 Fragaria vesca HOM05D006438 ORTHO05D007998 1.9e-115 420.2 381 61.9
PSO063G1116 Papaver somniferum HOM05D006438 ORTHO05D007998 4.3e-115 419.1 369 61.8
FAN03G1123 Fragaria x ananassa HOM05D006438 ORTHO05D007998 5.6e-115 418.7 384 60.4
Psat3g002440 Pisum sativum HOM05D006438 ORTHO05D007998 9.6e-115 417.9 362 63.0
Atru.chr5.676 Acer truncatum HOM05D006438 ORTHO05D007998 2.8e-114 416.4 300 73.0
Medtr7g117420 Medicago truncatula HOM05D006438 ORTHO05D007998 2.8e-114 416.4 392 61.5
PSO170G3726 Papaver somniferum HOM05D006438 ORTHO05D007998 6.2e-114 415.2 369 61.0
Aa31LG10G15790 Aethionema arabicum HOM05D006438 ORTHO05D007998 9.0e-113 411.4 347 64.0
CANSAT56G2224 Cannabis sativa HOM05D006438 ORTHO05D007998 1.2e-112 411.0 412 57.5
Cpa.g.sc96.25 Carica papaya HOM05D006438 ORTHO05D007998 2.6e-112 409.8 381 61.9
PGR031G2090 Punica granatum HOM05D006438 ORTHO05D007998 2.2e-111 406.8 382 63.6
ClCG06G001260 Citrullus lanatus HOM05D006438 ORTHO05D007998 1.9e-110 403.7 387 62.8
MBI07_g40678_MAGBIO Magnolia biondii HOM05D006438 ORTHO05D007998 5.6e-107 392.1 366 59.0
Aqoxy5G04279 Aquilegia oxysepala HOM05D006438 ORTHO05D007998 7.3e-107 391.7 335 61.2
AL5G44360 Arabidopsis lyrata HOM05D006438 ORTHO05D007998 1.3e-106 391.0 388 57.2
MELO3C022408.2 Cucumis melo HOM05D006438 ORTHO05D007998 1.6e-106 390.6 380 63.4
AT3G61800 Arabidopsis thaliana HOM05D006438 ORTHO05D007998 3.6e-106 389.4 344 61.0
Sed0005284 Sechium edule HOM05D006438 ORTHO05D007998 2.4e-105 386.7 386 60.9
FAN01G1234 Fragaria x ananassa HOM05D006438 ORTHO05D007998 5.3e-105 385.6 379 58.3
CARHR172130 Cardamine hirsuta HOM05D006438 ORTHO05D007998 3.4e-104 382.9 347 60.8
unitig_37.g12626 Utricularia gibba HOM05D006438 ORTHO05D007998 9.9e-104 381.3 332 62.7
Thhalv10005821m.g Eutrema salsugineum HOM05D006438 ORTHO05D007998 8.4e-103 378.3 344 59.6
Carub.0005s2854 Capsella rubella HOM05D006438 ORTHO05D007998 4.2e-102 375.9 344 59.3
CDE08G0794 Ceratophyllum demersum HOM05D006438 ORTHO05D007998 7.1e-102 375.2 339 59.3
Sp5g01570 Schrenkiella parvula HOM05D006438 ORTHO05D007998 1.2e-101 374.4 397 55.4
AUR62004500 Chenopodium quinoa HOM05D006438 ORTHO05D007998 3.5e-101 372.9 387 56.3
CsaV3_6G007190 Cucumis sativus L. HOM05D006438 ORTHO05D007998 4.6e-101 372.5 378 61.4
BolC6t37959H Brassica oleracea HOM05D006438 ORTHO05D007998 3.9e-100 369.4 342 59.6
BraA07t30216Z Brassica rapa HOM05D006438 ORTHO05D007998 1.1e-99 367.9 383 55.6
SHI13317 Sapria himalayana HOM05D006438 ORTHO05D007998 1.3e-98 364.4 364 56.9
C06p27980 Brassica napus HOM05D006438 ORTHO05D007998 2.1e-98 363.6 342 58.5
BcaC08g45168 Brassica carinata HOM05D006438 ORTHO05D007998 4.8e-98 362.5 319 61.8
A07p25760 Brassica napus HOM05D006438 ORTHO05D007998 2.4e-97 360.1 383 54.6
HPP92_008818 Vanilla planifolia HOM05D006438 ORTHO05D007998 2.4e-97 360.1 343 55.7
COL.COLO4_06280 Corchorus olitorius HOM05D006438 ORTHO05D007998 2.2e-95 353.6 304 62.2
ATR0602G124 Amborella trichopoda HOM05D006438 ORTHO05D007998 7.9e-93 345.1 368 53.0
Potri.014G099300 Populus trichocarpa HOM05D006438 ORTHO05D007998 3.0e-92 343.2 304 66.1
SEGI_11798 Sequoiadendron giganteum HOM05D006438 ORTHO05D007998 6.3e-66 255.8 386 44.0
Mapoly0002s0048 Marchantia polymorpha HOM05D006438 ORTHO05D007998 2.4e-65 253.8 352 43.5
Pp3c3_31410 Physcomitrium patens HOM05D006438 ORTHO05D007998 4.1e-65 253.1 363 41.9
Dinv35119 Davidia involucrata HOM05D006438 ORTHO05D007998 8.8e-60 235.3 381 41.2
SMO365G0083 Selaginella moellendorffii HOM05D006438 ORTHO05D007998 2.8e-58 230.3 331 41.4
BcaC08g45166 Brassica carinata HOM05D006438 ORTHO05D007998 1.3e-50 204.9 219 50.2
Zm00001eb378420 Zea mays HOM05D006438 ORTHO05D007998 5.5e-46 189.5 297 41.4
AagrBONN_evm.TU.Sc2ySwM_368.299 Anthoceros agrestis HOM05D006438 ORTHO05D007998 9.2e-33 145.6 339 29.2
Zm00001eb167390 Zea mays HOM05D006438 ORTHO05D007998 3.3e-14 84.0 90 53.3
Sabra02G0141200 Salix brachista HOM05D006438 ORTHO05D007998 2.8e-13 80.9 138 37.7
Aa31sc496G10 Aethionema arabicum HOM05D006438 ORTHO05D007998 5.2e-12 76.6 158 36.1
MCO15G002 Micromonas commoda HOM05D006438 ORTHO05D007998 2.7e-08 64.3 247 27.9


User provided reference genes

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