Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g13660 Coffea canephora HOM05D006236 ORTHO05D003486 4.4e-49 197.6 97 100.0
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 9.0e-34 146.7 92 76.1
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.4e-15 86.3 80 56.2
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 1.0e-13 80.1 84 51.2
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 5.1e-13 77.8 82 51.2
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.9e-12 75.9 82 45.1
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 4.3e-12 74.7 82 51.2
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 4.3e-12 74.7 83 47.0
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 7.4e-12 73.9 80 51.2
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 7.4e-12 73.9 84 48.8
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 9.7e-12 73.6 82 48.8
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 3.7e-11 71.6 81 45.7
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 3.7e-11 71.6 80 48.8
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 3.7e-11 71.6 82 47.6
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 8.2e-11 70.5 79 48.1
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 1.1e-10 70.1 82 42.7
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 1.4e-10 69.7 80 46.2
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 4.1e-10 68.2 92 40.2
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 4.1e-10 68.2 81 43.2
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.3e-10 67.8 107 36.4
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 5.3e-10 67.8 80 43.8
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 6.9e-10 67.4 82 41.5
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 6.9e-10 67.4 122 37.7
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 1.2e-09 66.6 84 45.2
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 1.5e-09 66.2 80 45.0
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.6e-09 65.5 81 46.9
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 3.4e-09 65.1 80 42.5
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 4.5e-09 64.7 82 41.5
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 4.5e-09 64.7 88 44.3
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 4.5e-09 64.7 80 42.5
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 5.9e-09 64.3 79 41.8
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 5.9e-09 64.3 86 40.7
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.3e-08 63.2 84 42.9
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 1.7e-08 62.8 81 44.4
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 2.2e-08 62.4 96 38.5
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.9e-08 62.0 83 41.0
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 3.8e-08 61.6 105 39.0
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 3.8e-08 61.6 82 41.5
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 3.8e-08 61.6 85 42.4
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 3.8e-08 61.6 88 43.2
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 5.0e-08 61.2 82 41.5
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 5.0e-08 61.2 78 47.4
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 8.5e-08 60.5 84 38.1
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 8.5e-08 60.5 78 44.9
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 1.1e-07 60.1 80 42.5
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 1.1e-07 60.1 82 39.0
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.1e-07 60.1 84 41.7
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.4e-07 59.7 82 39.0
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.4e-07 59.7 82 43.9
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 1.4e-07 59.7 83 39.8
SEGI_27702 Sequoiadendron giganteum HOM05D002377 ORTHO05D003486 1.4e-07 59.7 80 43.8
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.9e-07 59.3 85 35.3
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 1.9e-07 59.3 85 43.5
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 2.5e-07 58.9 82 40.2
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 3.2e-07 58.5 86 38.4
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 7.2e-07 57.4 81 42.0
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 9.3e-07 57.0 85 40.0
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 9.3e-07 57.0 82 37.8
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 9.3e-07 57.0 90 34.4
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 9.3e-07 57.0 80 42.5
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 9.3e-07 57.0 85 37.6
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 1.2e-06 56.6 81 44.4
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 1.2e-06 56.6 85 38.8
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.2e-06 56.6 80 42.5
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 1.6e-06 56.2 85 38.8
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 1.6e-06 56.2 52 51.9
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 2.1e-06 55.8 80 40.0
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 2.7e-06 55.5 83 34.9
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 2.7e-06 55.5 83 34.9
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 2.7e-06 55.5 83 38.6
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 2.7e-06 55.5 82 36.6
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 2.7e-06 55.5 82 35.4
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 2.7e-06 55.5 82 37.8
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 3.6e-06 55.1 85 38.8
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 3.6e-06 55.1 83 34.9
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 3.6e-06 55.1 85 38.8
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 4.6e-06 54.7 83 34.9
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 4.6e-06 54.7 83 34.9
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 4.6e-06 54.7 85 43.5
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 4.6e-06 54.7 81 43.2
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 4.6e-06 54.7 77 41.6
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 4.6e-06 54.7 71 38.0
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 4.6e-06 54.7 71 38.0
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 6.1e-06 54.3 83 42.2
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 6.1e-06 54.3 82 36.6
unitig_899.g14422 Utricularia gibba HOM05D006236 ORTHO05D003486 7.9e-06 53.9 58 46.6


User provided reference genes

Program Settings