Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 1.5e-123 446.4 264 100.0
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 2.6e-112 409.1 260 95.4
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 2.7e-72 276.2 260 60.8
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 3.5e-72 275.8 256 61.7
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 3.9e-71 272.3 270 60.4
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.1e-69 266.5 254 60.6
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 1.4e-68 263.8 263 60.5
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 3.1e-68 262.7 256 64.8
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 4.0e-68 262.3 259 61.4
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 1.2e-67 260.8 256 58.6
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 2.6e-67 259.6 260 60.8
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 3.4e-67 259.2 261 57.1
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 3.4e-67 259.2 250 62.0
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 4.4e-67 258.8 245 61.2
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 1.9e-65 253.4 260 64.2
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 3.2e-65 252.7 259 59.5
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 4.1e-65 252.3 256 60.9
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 9.2e-65 251.1 261 59.0
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 1.6e-64 250.4 255 60.8
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 1.0e-63 247.7 262 59.9
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 1.0e-63 247.7 241 61.0
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 2.3e-63 246.5 266 58.6
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 5.0e-63 245.4 235 61.3
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 6.6e-63 245.0 268 54.9
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 8.6e-63 244.6 235 59.1
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 8.6e-63 244.6 244 59.0
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 1.1e-62 244.2 258 65.1
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 3.3e-62 242.7 233 63.5
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 3.3e-62 242.7 252 57.9
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 3.3e-62 242.7 255 57.6
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 1.2e-61 240.7 264 54.9
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 2.8e-61 239.6 255 58.4
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 3.6e-61 239.2 260 55.4
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 3.6e-61 239.2 255 58.4
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 6.2e-61 238.4 265 61.5
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 8.1e-61 238.0 244 62.3
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 5.2e-60 235.3 262 55.7
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 6.8e-60 235.0 254 58.3
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 6.8e-60 235.0 234 60.3
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 8.9e-60 234.6 254 58.3
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 1.2e-59 234.2 255 58.8
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 1.5e-59 233.8 233 59.7
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 1.5e-59 233.8 255 55.7
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 2.0e-59 233.4 233 59.2
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 2.0e-59 233.4 268 53.4
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 2.6e-59 233.0 266 56.0
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 9.8e-59 231.1 254 55.1
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 2.2e-58 229.9 235 63.4
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 3.7e-58 229.2 251 65.3
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 3.7e-58 229.2 276 54.0
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 3.7e-58 229.2 271 54.6
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 3.7e-58 229.2 266 53.4
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 4.9e-58 228.8 234 60.3
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 4.9e-58 228.8 235 59.1
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 6.4e-58 228.4 271 52.4
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 8.3e-58 228.0 232 58.6
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 1.9e-57 226.9 233 58.8
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 2.4e-57 226.5 239 63.6
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 4.1e-57 225.7 231 57.1
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 1.2e-56 224.2 252 58.3
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 3.0e-55 219.5 235 57.0
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 3.0e-55 219.5 230 57.8
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 3.9e-55 219.2 233 53.6
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 3.9e-55 219.2 235 56.6
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 6.6e-55 218.4 236 58.1
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 8.6e-55 218.0 255 60.0
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.1e-54 217.6 231 56.7
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 3.3e-54 216.1 255 59.6
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 3.3e-54 216.1 255 59.6
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 4.3e-54 215.7 296 51.7
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 7.3e-54 214.9 256 61.7
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 2.1e-53 213.4 226 55.3
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 2.1e-53 213.4 220 65.5
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 2.8e-53 213.0 235 56.6
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 6.2e-53 211.8 231 53.2
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 2.3e-52 209.9 231 54.5
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 3.1e-52 209.5 223 58.3
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 1.2e-51 207.6 251 52.2
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 2.0e-51 206.8 237 54.0
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 5.8e-51 205.3 191 64.4
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 5.8e-51 205.3 256 59.8
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 2.9e-50 203.0 234 53.0
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 2.9e-50 203.0 219 54.8
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 1.1e-49 201.1 237 58.6
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 1.1e-49 201.1 235 54.5
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 2.7e-48 196.4 312 44.2
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 1.7e-47 193.7 234 51.7
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 8.6e-47 191.4 256 48.8
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 1.5e-46 190.7 245 48.2
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 4.3e-46 189.1 259 47.9
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 9.6e-46 188.0 239 47.7
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 3.1e-44 183.0 139 72.7
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 5.2e-44 182.2 239 46.9
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 6.8e-44 181.8 236 47.9
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 6.8e-44 181.8 236 47.9
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 1.5e-43 180.6 236 48.3
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 3.4e-43 179.5 227 46.7
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 3.4e-43 179.5 226 49.1
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 9.9e-43 177.9 245 46.1
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 3.8e-42 176.0 229 47.2
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 8.4e-42 174.9 239 46.9
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 8.4e-42 174.9 264 43.6
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 1.1e-41 174.5 230 51.3
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 1.9e-41 173.7 248 46.0
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 1.9e-41 173.7 248 46.0
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 4.2e-41 172.6 231 55.8
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 4.2e-41 172.6 248 46.0
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 2.1e-40 170.2 126 73.8
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 4.6e-40 169.1 223 48.0
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 1.0e-39 167.9 230 45.2
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 1.7e-39 167.2 223 48.0
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 9.0e-36 154.8 243 42.4
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 2.1e-29 133.7 122 63.9
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 4.8e-29 132.5 267 36.7
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 1.1e-28 131.3 170 49.4
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 2.6e-27 126.7 128 53.9
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 1.4e-25 120.9 262 32.1
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 2.1e-24 117.1 128 52.3
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 2.5e-22 110.2 118 55.1
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 1.6e-21 107.5 234 35.9
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 3.7e-21 106.3 125 48.0
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 5.7e-14 82.4 114 45.6
Actinidia31584 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.3e-13 81.3 223 33.2
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 1.1e-09 68.2 117 40.2
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 1.5e-06 57.8 55 54.5


User provided reference genes

Program Settings