Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 9.6e-154 547.0 314 100.0
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 1.7e-49 200.7 323 51.1
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 1.3e-46 191.0 332 47.9
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 2.3e-46 190.3 336 42.3
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 3.0e-46 189.9 329 47.4
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 3.9e-46 189.5 329 52.0
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 5.1e-46 189.1 323 46.1
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 5.1e-46 189.1 330 50.3
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 3.3e-45 186.4 328 48.5
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 6.2e-44 182.2 330 43.3
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 4.0e-43 179.5 328 47.3
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 1.2e-42 177.9 322 48.1
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 1.2e-42 177.9 324 50.9
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 1.0e-41 174.9 342 46.2
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 1.3e-41 174.5 339 44.0
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 1.3e-41 174.5 339 44.0
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 2.2e-41 173.7 329 42.2
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 2.9e-41 173.3 334 45.5
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 8.4e-41 171.8 334 48.8
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 1.1e-40 171.4 329 44.1
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 2.5e-40 170.2 337 44.8
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 2.5e-40 170.2 334 45.2
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 1.3e-38 164.5 324 45.7
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 1.8e-38 164.1 330 45.2
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 1.6e-36 157.5 329 44.1
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 2.1e-36 157.1 333 47.7
Nn5g28477 Nelumbo nucifera HOM05D007988 ORTHO05D009824 4.1e-35 152.9 319 47.6
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 2.2e-33 147.1 327 44.3
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 1.9e-32 144.1 330 38.5
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 5.1e-30 136.0 315 35.2
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 4.3e-29 132.9 343 40.2
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 1.6e-28 131.0 341 43.4
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 3.7e-28 129.8 322 46.6
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 6.3e-28 129.0 337 43.0
EL10Ac1g01385 Beta vulgaris HOM05D007988 ORTHO05D009824 9.0e-27 125.2 368 40.5
SGA_v2.0_scaffold52G18904 Striga asiatica HOM05D007988 ORTHO05D009824 1.0e-25 121.7 326 39.9
Glyma.06G119000 Glycine max HOM05D007988 ORTHO05D009824 1.3e-25 121.3 343 40.5
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 5.0e-25 119.4 355 38.9
Migut.C01082 Erythranthe guttata HOM05D007988 ORTHO05D009824 3.2e-24 116.7 346 38.7
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 4.2e-24 116.3 321 43.9
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 9.4e-24 115.2 333 38.1
Sopen04g026140 Solanum pennellii HOM05D007988 ORTHO05D009824 9.4e-24 115.2 352 41.8
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 1.6e-23 114.4 332 40.7
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 2.7e-23 113.6 338 43.2
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 6.1e-23 112.5 356 38.8
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 6.1e-23 112.5 338 41.4
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 7.9e-23 112.1 230 38.3
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 1.0e-22 111.7 342 40.6
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 3.0e-22 110.2 345 41.4
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 5.1e-22 109.4 338 42.6
Psat0s3071g0240 Pisum sativum HOM05D007988 ORTHO05D009824 8.8e-22 108.6 235 39.1
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 8.8e-22 108.6 330 40.0
MBI06_g32176_MAGBIO Magnolia biondii HOM05D007988 ORTHO05D009824 1.3e-20 104.8 354 36.2
ECA232G2067 Erigeron canadensis HOM05D007988 ORTHO05D009824 2.8e-20 103.6 328 38.4
CANSAT25G2204 Cannabis sativa HOM05D007988 ORTHO05D009824 6.3e-20 102.4 371 32.1
AUR62007686 Chenopodium quinoa HOM05D007988 ORTHO05D009824 4.1e-19 99.8 374 38.2
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 4.1e-19 99.8 229 38.0
arahy.Tifrunner.gnm1.ann1.GX31L7 Arachis hypogaea HOM05D007988 ORTHO05D009824 5.3e-19 99.4 336 40.5
Dinv37735 Davidia involucrata HOM05D007988 ORTHO05D009824 1.2e-18 98.2 230 35.7
arahy.Tifrunner.gnm1.ann1.1JY9DA Arachis hypogaea HOM05D007988 ORTHO05D009824 1.5e-18 97.8 338 40.2
PGSC0003DMG400002385 Solanum tuberosum HOM05D007988 ORTHO05D009824 5.9e-18 95.9 190 37.9
DCAR_003597 Daucus carota HOM05D007988 ORTHO05D009824 7.7e-18 95.5 335 40.9
CSS0018515 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 1.4e-16 91.3 168 39.9
HanXRQChr09g0256671 Helianthus annuus HOM05D007988 ORTHO05D009824 1.9e-16 90.9 331 32.3
Carub.0001s2093 Capsella rubella HOM05D012069 ORTHO05D009824 4.2e-16 89.7 352 34.1
AT1G21510 Arabidopsis thaliana HOM05D012069 ORTHO05D009824 5.5e-16 89.4 352 31.2
AL1G34650 Arabidopsis lyrata HOM05D012069 ORTHO05D009824 1.0e-14 85.1 348 31.6
Sp1g19040 Schrenkiella parvula HOM05D012069 ORTHO05D009824 1.0e-14 85.1 343 33.2
Sed0016946 Sechium edule HOM05D007988 ORTHO05D009824 6.7e-14 82.4 333 28.8
CARHR021870 Cardamine hirsuta HOM05D012069 ORTHO05D009824 2.6e-13 80.5 351 31.3
THA.LOC104813286 Tarenaya hassleriana HOM05D012069 ORTHO05D009824 1.7e-12 77.8 353 31.4
A06p17540 Brassica napus HOM05D012069 ORTHO05D009824 2.8e-12 77.0 352 26.7
BraA06t24850Z Brassica rapa HOM05D012069 ORTHO05D009824 2.8e-12 77.0 352 26.7
BcaB07g32147 Brassica carinata HOM05D012069 ORTHO05D009824 2.4e-11 73.9 353 26.9
Thhalv10009526m.g Eutrema salsugineum HOM05D012069 ORTHO05D009824 4.1e-11 73.2 356 32.6
MELO3C008455.2 Cucumis melo HOM05D007988 ORTHO05D009824 9.1e-11 72.0 329 35.6
Hund26769 Selenicereus undatus HOM05D007988 ORTHO05D009824 9.1e-11 72.0 370 26.8
Lalb_Chr04g0253601 Lupinus albus HOM05D007988 ORTHO05D009824 1.6e-10 71.2 164 34.1
FAN20G0590 Fragaria x ananassa HOM05D007988 ORTHO05D009824 1.7e-09 67.8 168 37.5
Aqoxy5G02290 Aquilegia oxysepala HOM05D007988 ORTHO05D009824 2.2e-09 67.4 182 36.8
BcaC05g26060 Brassica carinata HOM05D012069 ORTHO05D009824 2.2e-09 67.4 355 30.4
C05p20410 Brassica napus HOM05D012069 ORTHO05D009824 2.2e-09 67.4 355 30.4
BolC5t30735H Brassica oleracea HOM05D012069 ORTHO05D009824 2.2e-09 67.4 355 30.4
CsaV3_6G031310 Cucumis sativus L. HOM05D007988 ORTHO05D009824 5.0e-09 66.2 222 31.1
Sed0000785 Sechium edule HOM05D007988 ORTHO05D009824 5.0e-09 66.2 181 38.7
AUR62013453 Chenopodium quinoa HOM05D007988 ORTHO05D009824 1.9e-08 64.3 244 30.3
ClCG08G006150 Citrullus lanatus HOM05D007988 ORTHO05D009824 1.9e-08 64.3 220 30.0
Lalb_Chr08g0240981 Lupinus albus HOM05D007988 ORTHO05D009824 7.2e-08 62.4 192 34.4


User provided reference genes

Program Settings