Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 5.0e-96 354.4 171 100.0
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 4.9e-43 178.3 98 86.7
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 3.2e-42 175.6 98 85.7
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 1.2e-41 173.7 98 84.7
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 1.2e-41 173.7 98 84.7
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 1.6e-41 173.3 98 82.7
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 2.1e-41 172.9 98 81.6
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 2.7e-41 172.6 98 83.7
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 3.5e-41 172.2 98 84.7
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 4.6e-41 171.8 98 82.7
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 4.6e-41 171.8 98 81.6
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 6.0e-41 171.4 98 81.6
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 6.0e-41 171.4 98 81.6
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 6.0e-41 171.4 98 82.7
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 6.0e-41 171.4 98 82.7
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 7.8e-41 171.0 98 80.6
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 7.8e-41 171.0 98 82.7
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 1.0e-40 170.6 98 80.6
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 1.0e-40 170.6 98 80.6
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 1.0e-40 170.6 98 81.6
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 1.3e-40 170.2 98 80.6
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 1.3e-40 170.2 98 80.6
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 1.7e-40 169.9 98 81.6
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 1.7e-40 169.9 98 80.6
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 1.7e-40 169.9 98 79.6
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 2.3e-40 169.5 98 80.6
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 3.9e-40 168.7 98 82.7
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 3.9e-40 168.7 116 67.2
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 5.1e-40 168.3 100 78.0
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 5.1e-40 168.3 98 79.6
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 5.1e-40 168.3 98 80.6
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 5.1e-40 168.3 98 79.6
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 6.6e-40 167.9 98 81.6
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 6.6e-40 167.9 98 81.6
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.1e-39 167.2 98 79.6
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 1.1e-39 167.2 96 79.2
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 1.1e-39 167.2 98 78.6
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 1.1e-39 167.2 98 78.6
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 1.1e-39 167.2 98 78.6
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 1.1e-39 167.2 98 78.6
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 1.5e-39 166.8 98 79.6
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 1.5e-39 166.8 98 78.6
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.5e-39 166.8 98 78.6
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.9e-39 166.4 98 78.6
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 1.9e-39 166.4 98 78.6
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 2.5e-39 166.0 98 78.6
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 2.5e-39 166.0 98 79.6
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 2.5e-39 166.0 98 76.5
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 2.5e-39 166.0 98 77.6
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 3.3e-39 165.6 96 78.1
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 3.3e-39 165.6 98 76.5
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 4.3e-39 165.2 98 75.5
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 4.3e-39 165.2 98 77.6
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 4.3e-39 165.2 98 77.6
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 4.3e-39 165.2 98 78.6
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 5.6e-39 164.9 98 76.5
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 5.6e-39 164.9 96 79.2
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 5.6e-39 164.9 98 77.6
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 5.6e-39 164.9 98 76.5
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 7.3e-39 164.5 98 75.5
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 9.6e-39 164.1 108 74.1
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 1.6e-38 163.3 98 75.5
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 1.6e-38 163.3 98 75.5
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 1.6e-38 163.3 98 77.6
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 1.6e-38 163.3 97 77.3
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 1.6e-38 163.3 98 76.5
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 1.6e-38 163.3 96 79.2
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 1.6e-38 163.3 98 77.6
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 2.1e-38 162.9 98 75.5
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 2.8e-38 162.5 98 76.5
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 2.8e-38 162.5 98 75.5
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 4.8e-38 161.8 103 73.8
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 4.8e-38 161.8 95 77.9
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 6.2e-38 161.4 103 74.8
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 6.2e-38 161.4 103 74.8
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 6.2e-38 161.4 103 74.8
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 6.2e-38 161.4 103 74.8
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 6.2e-38 161.4 103 74.8
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 1.1e-37 160.6 98 74.5
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 1.1e-37 160.6 98 76.5
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 1.4e-37 160.2 103 73.8
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.4e-37 160.2 103 73.8
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 1.4e-37 160.2 92 78.3
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 1.4e-37 160.2 97 75.3
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 1.4e-37 160.2 108 70.4
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 1.4e-37 160.2 98 75.5
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.8e-37 159.8 103 73.8
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.8e-37 159.8 97 76.3
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 3.1e-37 159.1 97 76.3
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 4.0e-37 158.7 97 75.3
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 4.0e-37 158.7 108 70.4
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 4.0e-37 158.7 103 72.8
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 5.3e-37 158.3 86 84.9
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 5.3e-37 158.3 96 77.1
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 6.9e-37 157.9 103 73.8
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 6.9e-37 157.9 103 72.8
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 1.2e-36 157.1 95 77.9
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 1.2e-36 157.1 103 71.8
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 2.0e-36 156.4 98 75.5
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 2.0e-36 156.4 97 75.3
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 3.4e-36 155.6 98 73.5
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 3.4e-36 155.6 98 73.5
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 4.4e-36 155.2 98 69.4
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 1.3e-35 153.7 98 72.4
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 1.7e-35 153.3 96 71.9
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 2.2e-35 152.9 99 72.7
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 2.9e-35 152.5 90 78.9
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 2.9e-35 152.5 95 77.9
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 2.9e-35 152.5 96 72.9
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 4.9e-35 151.8 98 71.4
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 4.9e-35 151.8 94 74.5
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 1.4e-34 150.2 98 72.4
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 2.4e-34 149.4 98 70.4
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 2.4e-34 149.4 98 70.4
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 1.2e-33 147.1 94 70.2
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 1.2e-33 147.1 94 70.2
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 4.6e-33 145.2 96 66.7
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 1.7e-32 143.3 98 65.3
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 2.3e-32 142.9 92 68.5
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 3.9e-32 142.1 98 68.4
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 6.6e-32 141.4 103 67.0
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 1.9e-31 139.8 101 65.3
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 7.3e-31 137.9 103 67.0
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 9.6e-31 137.5 101 61.4
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 9.6e-31 137.5 101 61.4
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 1.3e-30 137.1 96 70.8
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 1.6e-30 136.7 103 63.1
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 1.6e-30 136.7 98 66.3
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 1.6e-30 136.7 96 62.5
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 2.1e-30 136.3 116 57.8
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 4.8e-30 135.2 95 62.1
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 4.8e-30 135.2 103 62.1
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 6.2e-30 134.8 94 64.9
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 1.1e-29 134.0 105 57.1
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 6.9e-29 131.3 101 62.4
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 9.0e-29 131.0 101 61.4
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 9.0e-29 131.0 101 61.4
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.5e-28 130.2 96 64.6
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 1.5e-28 130.2 97 66.0
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 1.7e-27 126.7 93 60.2
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.7e-27 126.7 69 82.6
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.9e-27 125.9 71 81.7
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.9e-27 125.9 71 81.7
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 4.9e-27 125.2 131 48.1
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 1.9e-26 123.2 99 60.6
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 2.1e-25 119.8 97 58.8
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 2.7e-25 119.4 70 77.1
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 3.9e-24 115.5 98 53.1
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 7.4e-23 111.3 95 50.5
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 3.7e-22 109.0 96 56.2
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 1.9e-18 96.7 75 65.3
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 1.0e-16 90.9 71 60.6
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 3.9e-16 89.0 45 86.7
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.9e-15 86.7 103 42.7
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 6.2e-14 81.6 70 55.7
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 8.2e-14 81.3 116 42.2
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.5e-10 69.7 51 58.8
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 9.3e-10 67.8 89 40.4
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 7.4e-07 58.2 31 83.9
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 7.4e-07 58.2 31 83.9
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 2.2e-06 56.6 51 45.1


User provided reference genes

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