Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 1.2e-236 822.8 410 100.0
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 5.6e-162 574.7 408 69.4
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 5.3e-160 568.2 408 68.6
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 5.3e-160 568.2 414 68.6
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 2.9e-158 562.4 413 68.5
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 3.8e-158 562.0 414 67.9
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 4.9e-158 561.6 411 68.6
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 2.3e-155 552.7 408 67.4
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 2.4e-152 542.7 344 75.0
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 3.8e-150 535.4 383 69.7
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 4.2e-149 531.9 415 64.6
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 4.2e-149 531.9 344 73.5
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.8e-147 526.6 349 74.2
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.8e-147 526.6 412 64.3
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 6.7e-147 524.6 410 62.0
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 1.9e-146 523.1 387 67.2
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 7.4e-146 521.2 340 72.9
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 3.7e-145 518.8 344 73.5
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 2.4e-144 516.2 348 71.6
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 4.1e-144 515.4 344 72.1
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 5.3e-144 515.0 342 71.9
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 6.9e-144 514.6 345 70.7
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 2.0e-143 513.1 344 72.1
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 5.9e-143 511.5 408 61.0
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 5.9e-143 511.5 489 56.2
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 5.9e-143 511.5 412 62.6
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 1.0e-142 510.8 346 71.1
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.3e-142 510.4 383 66.8
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 1.3e-142 510.4 342 70.5
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.9e-142 509.2 345 71.9
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 6.5e-142 508.1 374 67.1
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 1.4e-141 506.9 344 69.5
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.5e-141 506.1 341 69.8
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 3.2e-141 505.8 341 71.0
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 5.5e-141 505.0 341 69.8
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 9.4e-141 504.2 340 69.4
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 3.6e-140 502.3 344 69.8
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 6.1e-140 501.5 347 69.2
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.3e-139 499.6 344 67.7
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 8.8e-139 497.7 338 71.0
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 8.8e-139 497.7 345 70.4
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 1.1e-138 497.3 416 60.6
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.1e-138 497.3 327 73.1
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 3.3e-138 495.7 339 71.7
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 3.3e-138 495.7 334 72.5
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 4.3e-138 495.4 339 69.0
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 4.3e-138 495.4 357 67.5
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 4.3e-138 495.4 344 67.4
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 7.4e-138 494.6 338 70.7
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.7e-137 492.3 344 66.6
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 3.7e-137 492.3 364 66.2
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 4.8e-137 491.9 340 70.6
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 4.8e-137 491.9 342 68.4
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 8.2e-137 491.1 412 60.0
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 1.1e-136 490.7 342 70.8
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 1.2e-135 487.3 344 67.7
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 2.6e-135 486.1 343 69.1
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 1.7e-134 483.4 375 63.2
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.2e-134 483.0 353 66.6
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 8.5e-134 481.1 355 65.9
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 1.1e-133 480.7 339 69.0
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 1.1e-133 480.7 342 67.3
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 2.5e-133 479.6 379 61.2
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 3.2e-133 479.2 344 67.4
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 4.2e-133 478.8 360 65.0
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 5.5e-133 478.4 344 66.6
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 5.5e-133 478.4 347 67.7
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 7.2e-133 478.0 316 72.8
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 9.4e-133 477.6 344 66.6
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 1.6e-132 476.9 344 66.3
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 1.6e-132 476.9 344 66.3
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 1.6e-132 476.9 347 67.4
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 1.6e-132 476.9 347 67.4
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 2.1e-132 476.5 351 65.2
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 2.7e-132 476.1 344 66.3
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 3.6e-132 475.7 344 66.0
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 6.1e-132 474.9 344 65.7
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 3.9e-131 472.2 347 65.7
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 5.1e-131 471.9 343 67.6
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 8.8e-131 471.1 344 65.4
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 1.5e-130 470.3 340 66.5
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 2.0e-130 469.9 353 65.4
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.0e-130 469.9 345 65.2
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 5.7e-130 468.4 345 64.9
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 5.7e-130 468.4 332 66.6
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 3.7e-129 465.7 344 65.7
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 3.7e-129 465.7 344 66.0
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.4e-128 463.8 336 66.7
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 2.4e-128 463.0 344 65.1
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 9.1e-128 461.1 344 64.8
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 9.1e-128 461.1 344 64.8
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.6e-127 459.5 373 64.9
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 2.2e-126 456.4 304 70.4
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.5e-125 453.0 337 64.1
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 1.6e-124 450.3 295 73.2
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.4e-123 447.2 341 65.1
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 1.8e-123 446.8 344 62.5
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 7.4e-122 441.4 338 63.6
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 3.1e-120 436.0 323 64.7
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 1.0e-118 431.0 294 70.1
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 9.4e-117 424.5 319 65.5
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 1.6e-116 423.7 314 69.7
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 3.6e-116 422.5 277 73.6
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 6.1e-116 421.8 556 45.5
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 2.0e-114 416.8 338 61.2
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 8.5e-110 401.4 268 70.5
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 4.2e-109 399.1 268 69.8
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 7.2e-109 398.3 276 68.8
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 7.2e-109 398.3 344 61.3
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 9.5e-101 371.3 261 67.0
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 2.1e-100 370.2 338 59.2
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.4e-96 357.5 344 49.7
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 1.2e-95 354.4 298 58.7
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 1.3e-94 350.9 344 54.4
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 1.5e-93 347.4 316 53.2
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 1.5e-93 347.4 320 54.1
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 8.0e-92 341.7 318 50.6
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.8e-91 340.5 317 53.3
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 4.4e-90 335.9 230 73.0
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.6e-84 317.4 220 65.9
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 1.1e-83 314.7 270 60.4
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 1.0e-78 298.1 329 53.8
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.7e-73 280.8 203 70.0
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.9e-73 280.0 279 51.3
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 3.5e-71 273.1 171 74.3
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 5.2e-67 259.2 203 64.0
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.3e-65 254.6 244 53.3
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 5.4e-64 249.2 188 65.4
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.5e-53 214.5 225 53.3
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 1.5e-45 188.0 117 67.5
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.3e-41 174.9 303 34.7
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 6.5e-41 172.6 144 63.9
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.6e-39 167.9 149 53.7
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 1.3e-36 158.3 281 34.5
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 8.4e-33 145.6 93 67.7
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 3.5e-31 140.2 342 31.0
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.8e-30 137.9 75 84.0
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 1.7e-25 121.3 115 49.6
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 2.7e-15 87.4 74 62.2
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 7.9e-15 85.9 86 46.5
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 7.9e-15 85.9 51 78.4
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 5.7e-13 79.7 188 28.7


User provided reference genes

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