Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g12740 Coffea canephora HOM05D001245 ORTHO05D005230 3.7e-271 937.6 464 100.0
Dinv27279 Davidia involucrata HOM05D001245 ORTHO05D005230 4.3e-158 562.0 446 65.5
Dinv14681 Davidia involucrata HOM05D001245 ORTHO05D005230 5.6e-158 561.6 418 68.2
Actinidia29487 Actinidia chinensis HOM05D001245 ORTHO05D005230 1.3e-146 523.9 444 60.6
Thecc.08G132700 Theobroma cacao HOM05D001245 ORTHO05D005230 2.5e-142 509.6 410 61.7
vmacro00860 Vaccinium macrocarpon HOM05D001245 ORTHO05D005230 1.6e-141 506.9 347 69.5
Nitab4.5_0002045g0010 Nicotiana tabacum HOM05D001245 ORTHO05D005230 3.6e-141 505.8 444 59.0
Oeu051976.1 Olea europaea HOM05D001245 ORTHO05D005230 4.0e-140 502.3 440 60.2
Nitab4.5_0003240g0050 Nicotiana tabacum HOM05D001245 ORTHO05D005230 6.9e-140 501.5 445 59.6
Rhsim11G0071200 Rhododendron simsii HOM05D001245 ORTHO05D005230 9.0e-140 501.1 363 66.9
Sopen06g020180 Solanum pennellii HOM05D001245 ORTHO05D005230 1.5e-139 500.4 430 60.0
Nitab4.5_0006116g0040 Nicotiana tabacum HOM05D001245 ORTHO05D005230 3.4e-139 499.2 423 61.2
Atru.chr13.1559 Acer truncatum HOM05D001245 ORTHO05D005230 7.6e-139 498.0 409 62.1
PGSC0003DMG402011782 Solanum tuberosum HOM05D001245 ORTHO05D005230 1.7e-138 496.9 433 59.4
Ciclev10000146m.g Citrus clementina HOM05D001245 ORTHO05D005230 2.9e-138 496.1 414 60.1
Hma1.2p1_0420F.1_g149640 Hydrangea macrophylla HOM05D001245 ORTHO05D005230 4.9e-138 495.4 355 67.3
Nitab4.5_0001168g0130 Nicotiana tabacum HOM05D001245 ORTHO05D005230 8.4e-138 494.6 444 58.1
COL.COLO4_08843 Corchorus olitorius HOM05D001245 ORTHO05D005230 1.9e-137 493.4 409 59.7
SalBow7G3974 Salvia bowleyana HOM05D001245 ORTHO05D005230 5.4e-137 491.9 419 60.4
Migut.C01062 Erythranthe guttata HOM05D001245 ORTHO05D005230 7.1e-137 491.5 432 59.3
SalBow7G3837 Salvia bowleyana HOM05D001245 ORTHO05D005230 9.3e-137 491.1 455 57.1
Peaxi162Scf00051g02115 Petunia axillaris HOM05D001245 ORTHO05D005230 1.6e-136 490.3 438 58.7
MSTRG.25362 Avicennia marina HOM05D001245 ORTHO05D005230 2.1e-136 490.0 390 62.6
CAN.G531.6 Capsicum annuum HOM05D001245 ORTHO05D005230 3.5e-136 489.2 433 58.2
Duzib093G0544 Durio zibethinus HOM05D001245 ORTHO05D005230 6.0e-136 488.4 410 60.2
Nn1g08964 Nelumbo nucifera HOM05D001245 ORTHO05D005230 1.3e-135 487.3 422 59.0
HanXRQChr11g0326051 Helianthus annuus HOM05D001245 ORTHO05D005230 1.7e-135 486.9 390 64.4
Cfa018126 Carpinus fangiana HOM05D001245 ORTHO05D005230 1.5e-134 483.8 370 64.6
CiPaw.15G031500 Carya illinoinensis HOM05D001245 ORTHO05D005230 1.5e-134 483.8 379 63.9
Potri.002G078700 Populus trichocarpa HOM05D001245 ORTHO05D005230 1.9e-134 483.4 403 63.0
Sabra02G0061600 Salix brachista HOM05D001245 ORTHO05D005230 1.9e-134 483.4 409 61.6
Actinidia15219 Actinidia chinensis HOM05D001245 ORTHO05D005230 2.5e-134 483.0 478 55.0
Gohir.A02G110300 Gossypium hirsutum HOM05D001245 ORTHO05D005230 3.3e-134 482.6 407 59.7
Potri.005G182600 Populus trichocarpa HOM05D001245 ORTHO05D005230 3.3e-134 482.6 408 61.5
ECA232G2648 Erigeron canadensis HOM05D001245 ORTHO05D005230 4.3e-134 482.3 388 61.6
Gohir.D03G069002 Gossypium hirsutum HOM05D001245 ORTHO05D005230 5.6e-134 481.9 407 60.0
SGA_v2.0_scaffold52G18927 Striga asiatica HOM05D001245 ORTHO05D005230 1.6e-133 480.3 331 70.4
Gohir.D05G239900 Gossypium hirsutum HOM05D001245 ORTHO05D005230 2.1e-133 479.9 412 59.2
Gorai.013G107600 Gossypium raimondii HOM05D001245 ORTHO05D005230 2.8e-133 479.6 408 60.3
Prupe.1G489900 Prunus persica HOM05D001245 ORTHO05D005230 3.6e-133 479.2 425 57.4
Lsat_1_v5_gn_4_133761 Lactuca sativa HOM05D001245 ORTHO05D005230 8.1e-133 478.0 363 66.1
Gorai.009G248800 Gossypium raimondii HOM05D001245 ORTHO05D005230 6.9e-132 474.9 423 57.7
HanXRQChr09g0260671 Helianthus annuus HOM05D001245 ORTHO05D005230 1.2e-131 474.2 332 69.0
Sabra05G0138400 Salix brachista HOM05D001245 ORTHO05D005230 2.6e-131 473.0 420 59.5
Glyma.14G154600 Glycine max HOM05D001245 ORTHO05D005230 4.5e-131 472.2 376 63.6
Sopen11g001100 Solanum pennellii HOM05D001245 ORTHO05D005230 4.5e-131 472.2 379 61.7
CSS0005790 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D005230 5.8e-131 471.9 417 59.2
CiPaw.16G023000 Carya illinoinensis HOM05D001245 ORTHO05D005230 5.8e-131 471.9 378 62.7
Solyc11g005100.3 Solanum lycopersicum HOM05D001245 ORTHO05D005230 5.8e-131 471.9 379 61.7
RcHm_v2.0_Chr6g0296671 Rosa chinensis HOM05D001245 ORTHO05D005230 2.9e-130 469.5 411 58.2
CANSAT25G3405 Cannabis sativa HOM05D001245 ORTHO05D005230 3.8e-130 469.2 382 61.8
CSS0006563 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D005230 4.9e-130 468.8 417 59.0
MD08G1160800 Malus domestica HOM05D001245 ORTHO05D005230 6.4e-130 468.4 372 62.9
Thhalv10006690m.g Eutrema salsugineum HOM05D001245 ORTHO05D005230 8.4e-130 468.0 410 57.6
Sc02g0004740 Simmondsia chinensis HOM05D001245 ORTHO05D005230 8.4e-130 468.0 410 56.6
Lj1g0027388 Lotus japonicus HOM05D001245 ORTHO05D005230 2.4e-129 466.5 398 61.3
MSTRG.1415 Avicennia marina HOM05D001245 ORTHO05D005230 4.2e-129 465.7 412 59.0
Sp1g19160 Schrenkiella parvula HOM05D001245 ORTHO05D005230 9.3e-129 464.5 410 57.1
C05p20610 Brassica napus HOM05D001245 ORTHO05D005230 1.6e-128 463.8 401 58.9
BolC5t30759H Brassica oleracea HOM05D001245 ORTHO05D005230 1.6e-128 463.8 401 58.9
Glyma.13G032400 Glycine max HOM05D001245 ORTHO05D005230 1.6e-128 463.8 401 58.9
BcaB07g32157 Brassica carinata HOM05D001245 ORTHO05D005230 2.7e-128 463.0 430 55.1
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 2.7e-128 463.0 387 61.0
A06p17710 Brassica napus HOM05D001245 ORTHO05D005230 3.5e-128 462.6 401 58.4
BraA06t24863Z Brassica rapa HOM05D001245 ORTHO05D005230 3.5e-128 462.6 401 58.4
QL09p032559 Quercus lobata HOM05D001245 ORTHO05D005230 3.5e-128 462.6 396 60.4
Lalb_Chr04g0253541 Lupinus albus HOM05D001245 ORTHO05D005230 6.0e-128 461.8 391 59.8
arahy.Tifrunner.gnm1.ann1.XY3TEF Arachis hypogaea HOM05D001245 ORTHO05D005230 7.9e-128 461.5 407 58.2
Nn5g28433 Nelumbo nucifera HOM05D001245 ORTHO05D005230 1.0e-127 461.1 384 58.1
AT1G21640 Arabidopsis thaliana HOM05D001245 ORTHO05D005230 1.3e-127 460.7 399 57.6
THA.LOC104810241 Tarenaya hassleriana HOM05D001245 ORTHO05D005230 1.3e-127 460.7 408 57.4
AL1G34780 Arabidopsis lyrata HOM05D001245 ORTHO05D005230 1.8e-127 460.3 399 57.4
THA.LOC104800233 Tarenaya hassleriana HOM05D001245 ORTHO05D005230 3.9e-127 459.1 408 57.1
Aa31LG7G5610 Aethionema arabicum HOM05D001245 ORTHO05D005230 1.1e-126 457.6 411 57.9
Medtr1g029620 Medicago truncatula HOM05D001245 ORTHO05D005230 2.5e-126 456.4 404 57.4
Carub.0001s2106 Capsella rubella HOM05D001245 ORTHO05D005230 3.3e-126 456.1 399 57.4
CARHR021990 Cardamine hirsuta HOM05D001245 ORTHO05D005230 3.3e-126 456.1 417 56.4
MBI03_g28484_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D005230 3.3e-126 456.1 416 57.5
Lalb_Chr08g0241121 Lupinus albus HOM05D001245 ORTHO05D005230 4.3e-126 455.7 408 58.1
TPR.G30568 Trifolium pratense HOM05D001245 ORTHO05D005230 9.6e-126 454.5 415 55.9
TWI60G0016 Tripterygium wilfordii HOM05D001245 ORTHO05D005230 1.3e-125 454.1 369 62.1
Psat6g040280 Pisum sativum HOM05D001245 ORTHO05D005230 6.2e-125 451.8 343 63.0
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 8.1e-125 451.4 389 58.1
Eucgr.F03840 Eucalyptus grandis HOM05D001245 ORTHO05D005230 8.1e-125 451.4 403 60.0
PGR044G1057 Punica granatum HOM05D001245 ORTHO05D005230 1.1e-124 451.1 394 60.9
Ca_16606_v3 Cicer arietinum L. HOM05D003077 ORTHO05D005230 1.8e-124 450.3 372 62.6
Cpa.g.sc64.149 Carica papaya HOM05D001245 ORTHO05D005230 2.4e-124 449.9 364 62.4
Lj1g0024618 Lotus japonicus HOM05D001245 ORTHO05D005230 9.0e-124 448.0 363 62.0
ClCG08G006000 Citrullus lanatus HOM05D001245 ORTHO05D005230 1.7e-122 443.7 349 62.2
CSS0001754 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D005230 2.2e-122 443.4 333 66.7
Glyma.04G245800 Glycine max HOM05D001245 ORTHO05D005230 2.9e-122 443.0 365 61.6
AUR62007719 Chenopodium quinoa HOM05D001245 ORTHO05D005230 3.8e-122 442.6 400 56.0
Medtr3g088575 Medicago truncatula HOM05D001245 ORTHO05D005230 4.9e-122 442.2 362 62.4
Psat5g084880 Pisum sativum HOM05D001245 ORTHO05D005230 4.9e-122 442.2 436 56.4
AUR62013423 Chenopodium quinoa HOM05D001245 ORTHO05D005230 6.5e-122 441.8 402 56.5
Phvul.001G070700 Phaseolus vulgaris HOM05D001245 ORTHO05D005230 8.4e-122 441.4 409 56.2
EL10Ac1g01342 Beta vulgaris HOM05D001245 ORTHO05D005230 1.9e-121 440.3 372 57.5
MELO3C010654.2 Cucumis melo HOM05D001245 ORTHO05D005230 1.2e-120 437.6 347 62.5
THA.LOC104818532 Tarenaya hassleriana HOM05D001245 ORTHO05D005230 1.2e-120 437.6 372 58.3
CsaV3_6G034080 Cucumis sativus L. HOM05D001245 ORTHO05D005230 2.1e-120 436.8 347 62.0
Hund26775 Selenicereus undatus HOM05D001245 ORTHO05D005230 2.7e-120 436.4 381 57.7
VMungo1309G0776 Vigna mungo HOM05D001245 ORTHO05D005230 3.5e-120 436.0 388 57.5
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 3.0e-119 433.0 406 56.9
Sed0026204 Sechium edule HOM05D001245 ORTHO05D005230 3.9e-119 432.6 349 60.7
arahy.Tifrunner.gnm1.ann1.H3TQMF Arachis hypogaea HOM05D001245 ORTHO05D005230 6.7e-119 431.8 384 57.3
BcaC05g26081 Brassica carinata HOM05D001245 ORTHO05D005230 6.7e-119 431.8 401 56.6
arahy.Tifrunner.gnm1.ann1.MS2M1P Arachis hypogaea HOM05D001245 ORTHO05D005230 8.7e-119 431.4 384 57.3
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 1.9e-118 430.3 348 62.4
FvH4_2g27820 Fragaria vesca HOM05D001245 ORTHO05D005230 5.7e-118 428.7 406 56.9
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 5.7e-118 428.7 406 56.9
Glyma.06G117300 Glycine max HOM05D001245 ORTHO05D005230 7.4e-118 428.3 390 57.4
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 2.8e-117 426.4 406 56.7
Aqoxy5G02377 Aquilegia oxysepala HOM05D001245 ORTHO05D005230 8.2e-117 424.9 375 55.7
Phvul.009G129700 Phaseolus vulgaris HOM05D001245 ORTHO05D005230 5.9e-115 418.7 392 55.9
Os11g0191400 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D005230 6.7e-111 405.2 314 60.8
Hund17340 Selenicereus undatus HOM05D001245 ORTHO05D005230 9.7e-110 401.4 344 56.7
PSO528G0171 Papaver somniferum HOM05D001245 ORTHO05D005230 1.3e-109 401.0 356 59.3
Manes.18G082200 Manihot esculenta HOM05D001245 ORTHO05D005230 4.8e-109 399.1 336 60.4
Zm00001eb201410 Zea mays HOM05D001245 ORTHO05D005230 6.3e-109 398.7 357 55.2
ATR0584G287 Amborella trichopoda HOM05D001245 ORTHO05D005230 1.1e-108 397.9 374 54.5
HPP92_009278 Vanilla planifolia HOM05D001245 ORTHO05D005230 2.6e-107 393.3 389 52.4
PSO170G3940 Papaver somniferum HOM05D001245 ORTHO05D005230 6.5e-106 388.7 354 57.9
Zm00001eb091060 Zea mays HOM05D001245 ORTHO05D005230 3.2e-105 386.3 384 53.1
SEGI_31825 Sequoiadendron giganteum HOM05D001245 ORTHO05D005230 7.7e-91 338.6 360 47.8
SEGI_32042 Sequoiadendron giganteum HOM05D001245 ORTHO05D005230 7.7e-91 338.6 360 47.8
Sed0025958 Sechium edule HOM05D001245 ORTHO05D005230 1.5e-81 307.8 338 49.4
CDE06G1485 Ceratophyllum demersum HOM05D001245 ORTHO05D005230 1.0e-79 301.6 402 44.3
Lj7C350T12 Lonicera japonica HOM05D001245 ORTHO05D005230 5.5e-73 279.3 353 46.2
Nn5g28337 Nelumbo nucifera HOM05D001245 ORTHO05D005230 5.7e-70 269.2 268 52.6
BcaB06g27251 Brassica carinata HOM05D001245 ORTHO05D005230 1.1e-65 255.0 376 40.7
CDE08G0714 Ceratophyllum demersum HOM05D001245 ORTHO05D005230 9.5e-65 251.9 331 42.3
GSVIVG01008810001 Vitis vinifera HOM05D001245 ORTHO05D005230 1.8e-63 247.7 186 66.7
Gohir.A11G210300 Gossypium hirsutum HOM05D001245 ORTHO05D005230 1.4e-60 238.0 190 57.9
unitig_46.g18089 Utricularia gibba HOM05D001245 ORTHO05D005230 7.8e-59 232.3 223 54.7
BcaB04g17088 Brassica carinata HOM05D001245 ORTHO05D005230 1.1e-57 228.4 163 64.4
Pp3c18_2030 Physcomitrium patens HOM05D001245 ORTHO05D005230 1.9e-57 227.6 317 41.0
Mapoly0020s0027 Marchantia polymorpha HOM05D001245 ORTHO05D005230 3.6e-56 223.4 348 39.9
TPR.G13467 Trifolium pratense HOM05D001245 ORTHO05D005230 5.8e-54 216.1 274 44.9
SMO196G0088 Selaginella moellendorffii HOM05D001245 ORTHO05D005230 8.9e-47 192.2 265 41.1
Gohir.A13G092245 Gossypium hirsutum HOM05D001245 ORTHO05D005230 1.3e-45 188.3 136 64.0
AagrBONN_evm.TU.Sc2ySwM_344.3331 Anthoceros agrestis HOM05D001245 ORTHO05D005230 8.6e-42 175.6 298 34.6
unitig_46.g18090 Utricularia gibba HOM05D001245 ORTHO05D005230 6.2e-40 169.5 195 49.7
Gohir.A05G341300 Gossypium hirsutum HOM05D001245 ORTHO05D005230 5.8e-38 162.9 164 49.4
CBR_g27885 Chara braunii HOM05D001245 ORTHO05D005230 5.6e-33 146.4 373 29.5
BcaB02g06946 Brassica carinata HOM05D001245 ORTHO05D005230 4.2e-28 130.2 123 52.0
Solyc06g060060.4 Solanum lycopersicum HOM05D001245 ORTHO05D005230 4.5e-22 110.2 118 52.5
MCO06G214 Micromonas commoda HOM05D001245 ORTHO05D005230 4.8e-16 90.1 185 34.1
Gohir.A12G081100 Gossypium hirsutum HOM05D001245 ORTHO05D218232 3.1e-15 87.4 55 69.1
arahy.Tifrunner.gnm1.ann1.Q6HWVM Arachis hypogaea HOM05D001245 ORTHO05D005230 6.4e-13 79.7 103 45.6
Gohir.A05G237900 Gossypium hirsutum HOM05D001245 ORTHO05D005230 1.4e-12 78.6 106 42.5
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 1.8e-07 61.6 48 58.3


User provided reference genes

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