Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g11990 Coffea canephora HOM05D007582 ORTHO05D009645 7.8e-61 236.9 115 100.0
Solyc06g060300.1 Solanum lycopersicum HOM05D007582 ORTHO05D009645 1.0e-44 183.3 115 71.3
CAN.G1040.1 Capsicum annuum HOM05D007582 ORTHO05D009645 2.3e-44 182.2 115 69.6
PGSC0003DMG400041136 Solanum tuberosum HOM05D007582 ORTHO05D009645 5.1e-44 181.0 115 70.4
Sopen06g020420 Solanum pennellii HOM05D007582 ORTHO05D009645 8.7e-44 180.3 115 69.6
vmacro00836 Vaccinium macrocarpon HOM05D007582 ORTHO05D009645 1.5e-43 179.5 118 72.9
CAN.G1040.3 Capsicum annuum HOM05D007582 ORTHO05D009645 1.9e-43 179.1 115 68.7
RhsimUnG0092400 Rhododendron simsii HOM05D007582 ORTHO05D009645 4.3e-43 177.9 119 71.4
Nitab4.5_0003719g0010 Nicotiana tabacum HOM05D007582 ORTHO05D009645 1.3e-42 176.4 115 67.8
MSTRG.22408 Avicennia marina HOM05D007582 ORTHO05D009645 1.4e-41 172.9 115 67.8
Lj4P628T29 Lonicera japonica HOM05D007582 ORTHO05D009645 5.3e-41 171.0 115 67.0
Peaxi162Scf00051g00105 Petunia axillaris HOM05D007582 ORTHO05D009645 5.3e-41 171.0 111 67.6
TAR381G0802 Trochodendron aralioides HOM05D007582 ORTHO05D009645 6.9e-41 170.6 115 66.1
Oeu028565.1 Olea europaea HOM05D007582 ORTHO05D009645 2.0e-40 169.1 115 65.2
Aqoxy6G00171 Aquilegia oxysepala HOM05D007582 ORTHO05D009645 5.8e-40 167.5 115 64.3
Dinv07214 Davidia involucrata HOM05D007582 ORTHO05D009645 5.8e-40 167.5 117 68.4
CSS0038396 Camellia sinensis var. sinensis HOM05D007582 ORTHO05D009645 7.6e-40 167.2 119 69.7
Nn5g28305 Nelumbo nucifera HOM05D007582 ORTHO05D009645 3.8e-39 164.9 115 65.2
SGA_v2.0_scaffold28G11996 Striga asiatica HOM05D007582 ORTHO05D009645 4.9e-39 164.5 115 67.0
Potri.002G083100 Populus trichocarpa HOM05D007582 ORTHO05D009645 8.4e-39 163.7 115 63.5
SalBow6G5334 Salvia bowleyana HOM05D007582 ORTHO05D009645 8.4e-39 163.7 115 63.5
Atru.chr13.1488 Acer truncatum HOM05D007582 ORTHO05D009645 1.4e-38 162.9 115 62.6
TWI34G1919 Tripterygium wilfordii HOM05D007582 ORTHO05D009645 1.4e-38 162.9 116 62.9
Manes.02G163800 Manihot esculenta HOM05D007582 ORTHO05D009645 4.2e-38 161.4 117 63.2
Migut.N03282 Erythranthe guttata HOM05D007582 ORTHO05D009645 7.1e-38 160.6 115 62.6
MD15G1347500 Malus domestica HOM05D007582 ORTHO05D009645 9.3e-38 160.2 113 62.8
THA.LOC104817375 Tarenaya hassleriana HOM05D007582 ORTHO05D009645 1.6e-37 159.5 115 60.9
Thecc.08G126100 Theobroma cacao HOM05D007582 ORTHO05D009645 1.6e-37 159.5 115 60.0
PSO528G0093 Papaver somniferum HOM05D007582 ORTHO05D009645 2.1e-37 159.1 115 61.7
PSO170G1805 Papaver somniferum HOM05D007582 ORTHO05D009645 4.6e-37 157.9 115 60.9
QL09p034466 Quercus lobata HOM05D007582 ORTHO05D009645 4.6e-37 157.9 114 62.3
PGR042G2864 Punica granatum HOM05D007582 ORTHO05D009645 6.0e-37 157.5 114 59.6
Duzib116G0545 Durio zibethinus HOM05D007582 ORTHO05D009645 7.9e-37 157.1 115 60.9
AL1G52300 Arabidopsis lyrata HOM05D007582 ORTHO05D009645 1.8e-36 156.0 115 61.7
Haze_00435 Corylus avellana HOM05D007582 ORTHO05D009645 1.8e-36 156.0 116 64.7
Aqoxy6G00227 Aquilegia oxysepala HOM05D007582 ORTHO05D009645 2.3e-36 155.6 108 63.0
AT1G44414 Arabidopsis thaliana HOM05D007582 ORTHO05D009645 3.0e-36 155.2 115 60.0
MELO3C010615.2 Cucumis melo HOM05D007582 ORTHO05D009645 3.0e-36 155.2 115 60.0
Lj1g0018777 Lotus japonicus HOM05D007582 ORTHO05D009645 3.0e-36 155.2 117 60.7
Manes.18G077606 Manihot esculenta HOM05D007582 ORTHO05D009645 3.9e-36 154.8 115 58.3
RcHm_v2.0_Chr6g0295891 Rosa chinensis HOM05D007582 ORTHO05D009645 3.9e-36 154.8 117 59.8
Cpa.g.sc64.90 Carica papaya HOM05D007582 ORTHO05D009645 5.1e-36 154.5 115 58.3
Nn1g00264 Nelumbo nucifera HOM05D007582 ORTHO05D009645 6.7e-36 154.1 114 60.5
BcaB07g33949 Brassica carinata HOM05D007582 ORTHO05D009645 8.7e-36 153.7 115 58.3
FAN15G1067 Fragaria x ananassa HOM05D007582 ORTHO05D009645 8.7e-36 153.7 116 60.3
TPR.G25776 Trifolium pratense HOM05D007582 ORTHO05D009645 8.7e-36 153.7 115 60.0
Prupe.1G495300 Prunus persica HOM05D007582 ORTHO05D009645 1.1e-35 153.3 115 59.1
CiPaw.05G221000 Carya illinoinensis HOM05D007582 ORTHO05D009645 1.9e-35 152.5 116 62.1
ClCG08G005690 Citrullus lanatus HOM05D007582 ORTHO05D009645 1.9e-35 152.5 115 58.3
Thhalv10012348m.g Eutrema salsugineum HOM05D007582 ORTHO05D009645 2.5e-35 152.1 115 55.7
Lalb_Chr17g0343701 Lupinus albus HOM05D007582 ORTHO05D009645 2.5e-35 152.1 115 59.1
CDE06G0523 Ceratophyllum demersum HOM05D007582 ORTHO05D009645 4.3e-35 151.4 115 56.5
Sp1g33530 Schrenkiella parvula HOM05D007582 ORTHO05D009645 4.3e-35 151.4 115 57.4
CANSAT11G2348 Cannabis sativa HOM05D007582 ORTHO05D009645 5.6e-35 151.0 115 58.3
Glyma.14G150500 Glycine max HOM05D007582 ORTHO05D009645 5.6e-35 151.0 116 58.6
Medtr1g029990 Medicago truncatula HOM05D007582 ORTHO05D009645 5.6e-35 151.0 115 60.9
ATR0584G060 Amborella trichopoda HOM05D007582 ORTHO05D009645 7.4e-35 150.6 116 56.9
CARHR035920 Cardamine hirsuta HOM05D007582 ORTHO05D009645 7.4e-35 150.6 115 56.5
Sc22g0004000 Simmondsia chinensis HOM05D007582 ORTHO05D009645 9.6e-35 150.2 117 59.0
Ciclev10002916m.g Citrus clementina HOM05D007582 ORTHO05D009645 1.3e-34 149.8 115 58.3
Carub.0001s3518 Capsella rubella HOM05D007582 ORTHO05D009645 2.8e-34 148.7 115 55.7
Hma1.2p1_0054F.1_g031010 Hydrangea macrophylla HOM05D007582 ORTHO05D009645 2.8e-34 148.7 115 58.3
Aa31LG6G9350 Aethionema arabicum HOM05D007582 ORTHO05D009645 1.1e-33 146.7 115 53.9
BolC6t35199H Brassica oleracea HOM05D007582 ORTHO05D009645 4.0e-33 144.8 115 56.5
A06p11790 Brassica napus HOM05D007582 ORTHO05D009645 6.9e-33 144.1 115 56.5
Gohir.D06G045500 Gossypium hirsutum HOM05D007582 ORTHO05D009645 9.0e-33 143.7 105 60.0
BcaC08g42847 Brassica carinata HOM05D007582 ORTHO05D009645 3.4e-32 141.7 115 55.7
C06p00630 Brassica napus HOM05D007582 ORTHO05D009645 3.4e-32 141.7 115 55.7
VMungo0647G1492 Vigna mungo HOM05D007582 ORTHO05D009645 3.4e-32 141.7 115 55.7
Gorai.010G050500 Gossypium raimondii HOM05D007582 ORTHO05D009645 4.5e-32 141.4 105 59.0
HanXRQChr15g0465231 Helianthus annuus HOM05D007582 ORTHO05D009645 2.9e-31 138.7 115 56.5
Phvul.008G160900 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 3.8e-31 138.3 115 54.8
Phvul.008G167875 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 3.8e-31 138.3 115 54.8
CsaV3_6G034440 Cucumis sativus L. HOM05D007582 ORTHO05D009645 4.9e-31 137.9 105 56.2
SHI08583 Sapria himalayana HOM05D007582 ORTHO05D009645 6.5e-31 137.5 117 55.6
arahy.Tifrunner.gnm1.ann1.WSBZ3R Arachis hypogaea HOM05D007582 ORTHO05D009645 3.2e-30 135.2 98 61.2
HPP92_006841 Vanilla planifolia HOM05D007582 ORTHO05D009645 3.2e-30 135.2 119 52.1
DCAR_016167 Daucus carota HOM05D007582 ORTHO05D009645 4.2e-30 134.8 116 54.3
Sed0002225 Sechium edule HOM05D007582 ORTHO05D009645 4.2e-30 134.8 114 56.1
Psat6g041680 Pisum sativum HOM05D007582 ORTHO05D009139 6.0e-29 131.0 101 59.4
ECA233G1368 Erigeron canadensis HOM05D007582 ORTHO05D009645 1.3e-28 129.8 109 55.0
Gohir.A06G045000 Gossypium hirsutum HOM05D007582 ORTHO05D009645 1.8e-28 129.4 71 76.1
Zm00001eb348620 Zea mays HOM05D007582 ORTHO05D009645 1.5e-27 126.3 116 53.4
Os05g0435400 Oryza sativa ssp. japonica HOM05D007582 ORTHO05D009645 1.6e-26 122.9 116 51.7
SMO143G0209 Selaginella moellendorffii HOM05D007582 ORTHO05D009645 3.4e-24 115.2 114 45.6
Nn3g18690 Nelumbo nucifera HOM05D007582 ORTHO05D009645 4.5e-24 114.8 114 48.2
Nitab4.5_0011334g0030 Nicotiana tabacum HOM05D007582 ORTHO05D009645 3.0e-20 102.1 85 58.8
Pp3c19_19360 Physcomitrium patens HOM05D007582 ORTHO05D009645 1.8e-17 92.8 120 38.3
Nn4g24512 Nelumbo nucifera HOM05D007582 ORTHO05D009645 2.4e-17 92.4 74 56.8
Mapoly0085s0071 Marchantia polymorpha HOM05D007582 ORTHO05D009645 7.7e-16 87.4 119 34.5
AagrBONN_evm.TU.Sc2ySwM_362.1959 Anthoceros agrestis HOM05D007582 ORTHO05D009645 5.1e-12 74.7 65 49.2
Aa31LG6G9370 Aethionema arabicum HOM05D007582 ORTHO05D009645 9.7e-11 70.5 115 35.7
AagrBONN_evm.TU.Sc2ySwM_362.2461 Anthoceros agrestis HOM05D007582 ORTHO05D009645 2.4e-09 65.9 66 40.9
Phvul.L001669 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 9.1e-09 63.9 42 66.7
Nn1g08790 Nelumbo nucifera HOM05D007582 ORTHO05D009645 5.9e-08 61.2 35 74.3


User provided reference genes

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