Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g11640 Coffea canephora HOM05D006270 ORTHO05D007755 1.8e-170 602.4 293 100.0
Dinv03143 Davidia involucrata HOM05D006270 ORTHO05D007755 1.1e-82 310.8 301 56.8
Nitab4.5_0001579g0030 Nicotiana tabacum HOM05D006270 ORTHO05D007755 1.7e-80 303.5 189 75.7
Actinidia23030 Actinidia chinensis HOM05D006270 ORTHO05D007755 6.6e-80 301.6 263 61.2
MSTRG.25449 Avicennia marina HOM05D006270 ORTHO05D007755 1.1e-79 300.8 226 65.9
Lsat_1_v5_gn_0_7900 Lactuca sativa HOM05D006270 ORTHO05D007755 1.1e-79 300.8 234 63.7
Nitab4.5_0000167g0160 Nicotiana tabacum HOM05D006270 ORTHO05D007755 3.3e-79 299.3 189 75.1
SGA_v2.0_scaffold24G10562 Striga asiatica HOM05D006270 ORTHO05D007755 3.3e-79 299.3 192 71.4
PGSC0003DMG400014297 Solanum tuberosum HOM05D006270 ORTHO05D007755 2.8e-78 296.2 272 57.0
Rhsim12G0005700 Rhododendron simsii HOM05D006270 ORTHO05D007755 8.0e-78 294.7 256 60.9
ECA232G4580 Erigeron canadensis HOM05D006270 ORTHO05D007755 1.1e-77 294.3 238 60.9
HanXRQChr05g0147941 Helianthus annuus HOM05D006270 ORTHO05D007755 1.4e-77 293.9 198 69.7
GSVIVG01026015001 Vitis vinifera HOM05D006270 ORTHO05D007755 1.8e-77 293.5 259 59.1
Migut.C01268 Erythranthe guttata HOM05D006270 ORTHO05D007755 2.3e-77 293.1 249 59.8
Sopen03g004530 Solanum pennellii HOM05D006270 ORTHO05D007755 5.2e-77 292.0 270 57.4
Manes.08G135800 Manihot esculenta HOM05D006270 ORTHO05D007755 2.6e-76 289.7 252 59.1
Solyc03g025710.3 Solanum lycopersicum HOM05D006270 ORTHO05D007755 1.3e-75 287.3 271 57.6
Oeu032990.1 Olea europaea HOM05D006270 ORTHO05D007755 2.9e-75 286.2 194 71.6
Ciclev10021647m.g Citrus clementina HOM05D006270 ORTHO05D007755 6.4e-75 285.0 236 61.4
QL09p054436 Quercus lobata HOM05D006270 ORTHO05D007755 1.2e-73 280.8 225 64.0
FAN06G0691 Fragaria x ananassa HOM05D006270 ORTHO05D007755 2.1e-73 280.0 253 57.7
QL09p054318 Quercus lobata HOM05D006270 ORTHO05D007755 2.1e-73 280.0 225 64.0
Duzib205G0009 Durio zibethinus HOM05D006270 ORTHO05D007755 4.6e-73 278.9 227 61.2
FAN10G3159 Fragaria x ananassa HOM05D006270 ORTHO05D007755 4.6e-73 278.9 248 59.3
TAR628G1531 Trochodendron aralioides HOM05D006270 ORTHO05D007755 6.0e-73 278.5 212 65.1
FAN06G0861 Fragaria x ananassa HOM05D006270 ORTHO05D007755 7.8e-73 278.1 249 57.8
FAN10G0687 Fragaria x ananassa HOM05D006270 ORTHO05D007755 7.8e-73 278.1 246 58.5
CAN.G307.5 Capsicum annuum HOM05D006270 ORTHO05D007755 2.3e-72 276.6 271 54.6
Thecc.03G315400 Theobroma cacao HOM05D006270 ORTHO05D007755 2.3e-72 276.6 214 62.6
vmacro00974 Vaccinium macrocarpon HOM05D006270 ORTHO05D007755 2.3e-72 276.6 253 60.9
Gohir.D08G172100 Gossypium hirsutum HOM05D006270 ORTHO05D007755 3.0e-72 276.2 216 62.0
FAN03G2743 Fragaria x ananassa HOM05D006270 ORTHO05D007755 3.9e-72 275.8 246 58.1
Gorai.004G179400 Gossypium raimondii HOM05D006270 ORTHO05D007755 5.1e-72 275.4 190 66.8
Atru.chr13.2329 Acer truncatum HOM05D006270 ORTHO05D007755 8.6e-72 274.6 190 67.4
EL10Ac1g00156 Beta vulgaris HOM05D006270 ORTHO05D007755 8.6e-72 274.6 198 65.7
Potri.005G054600 Populus trichocarpa HOM05D006270 ORTHO05D007755 1.1e-71 274.2 256 55.5
FAN01G1506 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.9e-71 273.5 231 60.2
Sabra05G0047500 Salix brachista HOM05D006270 ORTHO05D007755 2.5e-71 273.1 301 52.5
RcHm_v2.0_Chr1g0380911 Rosa chinensis HOM05D006270 ORTHO05D007755 3.3e-71 272.7 231 59.7
SalBow7G0089 Salvia bowleyana HOM05D006270 ORTHO05D007755 1.6e-70 270.4 190 67.9
Gohir.A08G151000 Gossypium hirsutum HOM05D006270 ORTHO05D007755 2.1e-70 270.0 190 65.8
Cfa017859 Carpinus fangiana HOM05D006270 ORTHO05D007755 2.8e-70 269.6 269 57.2
Haze_18335 Corylus avellana HOM05D006270 ORTHO05D007755 2.8e-70 269.6 194 69.6
AUR62023526 Chenopodium quinoa HOM05D006270 ORTHO05D007755 6.2e-70 268.5 200 65.5
PSO782G5577 Papaver somniferum HOM05D006270 ORTHO05D007755 6.2e-70 268.5 205 64.9
Aqoxy6G00085 Aquilegia oxysepala HOM05D006270 ORTHO05D007755 2.3e-69 266.5 196 66.8
DCAR_028408 Daucus carota HOM05D006270 ORTHO05D007755 3.1e-69 266.2 247 57.9
Sc23g0001640 Simmondsia chinensis HOM05D006270 ORTHO05D007755 3.1e-69 266.2 196 67.9
TWI59G0231 Tripterygium wilfordii HOM05D006270 ORTHO05D007755 8.9e-69 264.6 195 64.6
PSO170G6113 Papaver somniferum HOM05D006270 ORTHO05D007755 2.6e-68 263.1 196 65.8
Eucgr.F02983 Eucalyptus grandis HOM05D006270 ORTHO05D007755 3.4e-68 262.7 200 66.5
Peaxi162Scf01013g00026 Petunia axillaris HOM05D006270 ORTHO05D007755 5.8e-68 261.9 187 66.8
Lj3g0009409 Lotus japonicus HOM05D006270 ORTHO05D007755 9.9e-68 261.2 228 58.3
PGR102G0747 Punica granatum HOM05D006270 ORTHO05D007755 2.2e-67 260.0 191 68.1
ATR1136G034 Amborella trichopoda HOM05D006270 ORTHO05D007755 2.9e-67 259.6 186 67.7
Nitab4.5_0001579g0080 Nicotiana tabacum HOM05D006270 ORTHO05D007755 2.4e-66 256.5 188 68.1
Phvul.011G002300 Phaseolus vulgaris HOM05D006270 ORTHO05D007755 3.2e-66 256.1 193 64.2
Glyma.08G240100 Glycine max HOM05D006270 ORTHO05D007755 4.1e-66 255.8 240 55.8
TPR.G27896 Trifolium pratense HOM05D006270 ORTHO05D007755 7.1e-66 255.0 210 60.0
C06p35210 Brassica napus HOM05D006270 ORTHO05D007755 9.2e-66 254.6 190 63.2
Glyma.12G002000 Glycine max HOM05D006270 ORTHO05D007755 1.2e-65 254.2 239 55.2
BraA07t30681Z Brassica rapa HOM05D006270 ORTHO05D007755 2.1e-65 253.4 230 55.7
VMungo1127G1589 Vigna mungo HOM05D006270 ORTHO05D007755 2.1e-65 253.4 193 64.2
arahy.Tifrunner.gnm1.ann1.WW5SAZ Arachis hypogaea HOM05D006270 ORTHO05D007755 2.7e-65 253.1 233 55.4
BcaB03g15641 Brassica carinata HOM05D006270 ORTHO05D007755 2.7e-65 253.1 190 63.2
A07p30450 Brassica napus HOM05D006270 ORTHO05D007755 3.5e-65 252.7 230 55.7
Nitab4.5_0000167g0150 Nicotiana tabacum HOM05D006270 ORTHO05D007755 3.5e-65 252.7 188 66.5
arahy.Tifrunner.gnm1.ann1.3FR1H5 Arachis hypogaea HOM05D006270 ORTHO05D007755 7.8e-65 251.5 233 55.4
CANSAT21G0664 Cannabis sativa HOM05D006270 ORTHO05D007755 7.8e-65 251.5 196 62.8
AT1G72030 Arabidopsis thaliana HOM05D006270 ORTHO05D007755 1.0e-64 251.1 243 52.7
BcaC08g45741 Brassica carinata HOM05D006270 ORTHO05D007755 1.0e-64 251.1 190 62.6
BolC6t38627H Brassica oleracea HOM05D006270 ORTHO05D007755 1.0e-64 251.1 190 62.6
Carub.0002s1881 Capsella rubella HOM05D006270 ORTHO05D007755 1.0e-64 251.1 260 51.2
Psat7g147160 Pisum sativum HOM05D006270 ORTHO05D007755 1.7e-64 250.4 239 56.1
CARHR064850 Cardamine hirsuta HOM05D006270 ORTHO05D007755 2.3e-64 250.0 230 55.2
Thhalv10019029m.g Eutrema salsugineum HOM05D006270 ORTHO05D007755 1.9e-63 246.9 190 62.1
AL2G31660 Arabidopsis lyrata HOM05D006270 ORTHO05D007755 2.5e-63 246.5 190 63.2
Aa31LG4G10780 Aethionema arabicum HOM05D006270 ORTHO05D007755 3.3e-63 246.1 190 61.1
unitig_8.g2905 Utricularia gibba HOM05D006270 ORTHO05D007755 7.3e-63 245.0 194 61.9
COL.COLO4_16875 Corchorus olitorius HOM05D006270 ORTHO05D007755 1.6e-62 243.8 160 68.8
Os07g0264800 Oryza sativa ssp. japonica HOM05D006270 ORTHO05D007755 2.8e-62 243.0 198 63.6
Cpa.g.sc66.22 Carica papaya HOM05D006270 ORTHO05D007755 3.6e-62 242.7 191 60.2
Sp5g27100 Schrenkiella parvula HOM05D006270 ORTHO05D007755 3.6e-62 242.7 241 51.9
Lalb_Chr01g0000131 Lupinus albus HOM05D006270 ORTHO05D007755 1.4e-61 240.7 212 56.6
THA.LOC104809733 Tarenaya hassleriana HOM05D006270 ORTHO05D007755 8.9e-61 238.0 190 62.1
HPP92_002765 Vanilla planifolia HOM05D006270 ORTHO05D007755 1.5e-60 237.3 189 62.4
CiPaw.16G073500 Carya illinoinensis HOM05D006270 ORTHO05D007755 2.9e-59 233.0 310 44.8
CsaV3_7G024750 Cucumis sativus L. HOM05D006270 ORTHO05D007755 1.1e-58 231.1 191 58.6
Sed0023542 Sechium edule HOM05D006270 ORTHO05D007755 3.2e-58 229.6 199 56.3
ClCG09G010100 Citrullus lanatus HOM05D006270 ORTHO05D007755 9.2e-58 228.0 191 58.1
PGSC0003DMG400007305 Solanum tuberosum HOM05D006270 ORTHO05D007755 2.1e-57 226.9 199 59.3
SEGI_40158 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 4.6e-57 225.7 198 55.6
Sopen11g010160 Solanum pennellii HOM05D006270 ORTHO05D007755 5.1e-56 222.2 184 57.6
CAN.G1280.16 Capsicum annuum HOM05D006270 ORTHO05D007755 8.7e-56 221.5 199 58.8
PGSC0003DMG400034528 Solanum tuberosum HOM05D006270 ORTHO05D007755 1.1e-55 221.1 187 57.8
Nn5g27482 Nelumbo nucifera HOM05D006270 ORTHO05D007755 9.6e-55 218.0 165 65.5
Pp3c3_19510 Physcomitrium patens HOM05D006270 ORTHO05D007755 4.8e-54 215.7 196 53.1
SMO352G0005 Selaginella moellendorffii HOM05D006270 ORTHO05D007755 1.4e-50 204.1 192 53.1
Lj7A621T38 Lonicera japonica HOM05D006270 ORTHO05D007755 1.2e-49 201.1 145 67.6
Ca_19683_v3 Cicer arietinum L. HOM05D006270 ORTHO05D007755 2.7e-49 199.9 148 66.2
CSS0031567 Camellia sinensis var. sinensis HOM05D006270 ORTHO05D007755 4.2e-42 176.0 235 48.9
AUR62004580 Chenopodium quinoa HOM05D006270 ORTHO05D007755 7.9e-41 171.8 108 75.0
Prupe.2G311100 Prunus persica HOM05D006270 ORTHO05D007755 1.5e-39 167.5 183 53.0
Mapoly0148s0033 Marchantia polymorpha HOM05D006270 ORTHO05D007755 2.1e-38 163.7 182 47.3
FvH4_7g31720 Fragaria vesca HOM05D006270 ORTHO05D007755 5.3e-37 159.1 180 50.0
CDE04G3476 Ceratophyllum demersum HOM05D006270 ORTHO05D007755 2.0e-36 157.1 163 52.8
MBI06_g06704_MAGBIO Magnolia biondii HOM05D006270 ORTHO05D007755 4.5e-36 156.0 145 55.2
Zm00001eb304740 Zea mays HOM05D006270 ORTHO05D007755 5.8e-36 155.6 158 55.1
SEGI_10565 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 3.0e-32 143.3 131 55.7
SEGI_32338 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 7.4e-31 138.7 116 62.1
Solyc11g020000.1 Solanum lycopersicum HOM05D006270 ORTHO05D007755 4.8e-30 136.0 184 39.7
MELO3C024085.2 Cucumis melo HOM05D006270 ORTHO05D007755 1.4e-29 134.4 122 56.6
Ah.05g178770 Amaranthus hybridus HOM05D006270 ORTHO05D007755 1.0e-27 128.3 125 56.0
AagrBONN_evm.TU.Sc2ySwM_228.4762 Anthoceros agrestis HOM05D006270 ORTHO05D007755 3.8e-27 126.3 186 42.5
SEGI_00952 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 7.9e-25 118.6 112 56.2
Nitab4.5_0000329g0020 Nicotiana tabacum HOM05D006270 ORTHO05D007755 1.0e-24 118.2 126 52.4
GSVIVG01026021001 Vitis vinifera HOM05D000026 ORTHO05D001436 5.3e-21 105.9 67 73.1
MD01G1220200 Malus domestica HOM05D006270 ORTHO05D007755 2.2e-19 100.5 72 65.3
CBR_g50390 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-19 99.8 119 40.3
SEGI_26224 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 5.0e-19 99.4 95 56.8
Cre06.g269100 Chlamydomonas reinhardtii HOM05D006270 ORTHO05D007755 3.6e-17 93.2 214 31.8
GSVIVG01026018001 Vitis vinifera HOM05D006270 ORTHO05D007755 1.7e-11 74.3 46 73.9
SEGI_16930 Sequoiadendron giganteum HOM05D005733 ORTHO05D007442 6.7e-08 62.4 95 31.6
SEGI_09763 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 4.4e-07 59.7 64 51.6
SEGI_10524 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 2.2e-06 57.4 64 48.4
MCO16G519 Micromonas commoda HOM05D006270 ORTHO05D007755 2.8e-06 57.0 85 35.3


User provided reference genes

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