Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 4.0e-51 204.5 107 100.0
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 1.9e-37 159.1 93 86.0
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 7.3e-37 157.1 107 76.6
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 7.3e-37 157.1 107 76.6
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 4.7e-36 154.5 107 75.7
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 1.4e-35 152.9 107 74.8
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 1.5e-34 149.4 107 72.9
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 2.0e-34 149.1 107 73.8
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 2.6e-34 148.7 106 73.6
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 3.4e-34 148.3 92 79.3
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 9.9e-34 146.7 104 69.2
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 9.9e-34 146.7 104 69.2
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 9.9e-34 146.7 104 69.2
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 9.9e-34 146.7 98 76.5
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 2.2e-33 145.6 104 68.3
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 2.2e-33 145.6 107 73.8
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 2.2e-33 145.6 107 72.9
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 2.9e-33 145.2 107 73.8
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 4.9e-33 144.4 107 67.3
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 6.4e-33 144.1 107 65.4
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 8.4e-33 143.7 107 68.2
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 8.4e-33 143.7 107 70.1
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 8.4e-33 143.7 107 70.1
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 1.1e-32 143.3 107 69.2
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.4e-32 142.9 107 71.0
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 1.9e-32 142.5 106 68.9
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 1.9e-32 142.5 106 67.0
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 1.9e-32 142.5 104 66.3
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 1.9e-32 142.5 106 70.8
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.4e-32 142.1 107 71.0
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 3.2e-32 141.7 107 67.3
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 3.2e-32 141.7 107 67.3
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 3.2e-32 141.7 107 72.9
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 4.2e-32 141.4 105 71.4
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 5.4e-32 141.0 102 67.6
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 5.4e-32 141.0 102 67.6
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 5.4e-32 141.0 108 68.5
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 5.4e-32 141.0 109 67.9
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 7.1e-32 140.6 104 67.3
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 7.1e-32 140.6 107 71.0
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 7.1e-32 140.6 107 71.0
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 7.1e-32 140.6 106 70.8
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 7.1e-32 140.6 107 67.3
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 9.3e-32 140.2 102 66.7
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 9.3e-32 140.2 107 67.3
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 9.3e-32 140.2 104 69.2
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 1.2e-31 139.8 107 70.1
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.2e-31 139.8 107 70.1
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 1.6e-31 139.4 106 67.9
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.6e-31 139.4 107 70.1
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 1.6e-31 139.4 107 67.3
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 2.1e-31 139.0 106 67.9
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 2.7e-31 138.7 114 66.7
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 3.5e-31 138.3 105 68.6
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 3.5e-31 138.3 107 67.3
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 3.5e-31 138.3 107 67.3
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 3.5e-31 138.3 93 75.3
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 4.6e-31 137.9 107 70.1
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 4.6e-31 137.9 102 65.7
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 6.0e-31 137.5 104 68.3
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 6.0e-31 137.5 107 67.3
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 6.0e-31 137.5 108 65.7
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 7.8e-31 137.1 102 64.7
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 7.8e-31 137.1 105 68.6
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 1.0e-30 136.7 106 69.8
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.0e-30 136.7 107 70.1
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.3e-30 136.3 105 67.6
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 2.3e-30 135.6 107 68.2
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 2.3e-30 135.6 107 67.3
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 2.3e-30 135.6 107 60.7
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 3.0e-30 135.2 107 67.3
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 3.9e-30 134.8 107 66.4
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 5.1e-30 134.4 102 65.7
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 8.7e-30 133.7 107 66.4
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.1e-29 133.3 93 71.0
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 1.9e-29 132.5 105 63.8
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.9e-29 132.5 128 60.9
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 2.5e-29 132.1 125 56.8
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 5.6e-29 131.0 107 69.2
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 9.6e-29 130.2 104 64.4
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 9.6e-29 130.2 104 64.4
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 1.3e-28 129.8 107 64.5
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.3e-28 129.8 95 65.3
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 1.6e-28 129.4 107 63.6
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.6e-28 129.4 88 71.6
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.6e-28 129.4 106 63.2
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 1.6e-28 129.4 120 61.7
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.6e-28 129.4 87 71.3
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 2.1e-28 129.0 107 65.4
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 2.1e-28 129.0 107 64.5
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 2.8e-28 128.6 84 73.8
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 3.6e-28 128.3 107 64.5
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 3.6e-28 128.3 88 71.6
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 3.6e-28 128.3 88 70.5
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 6.2e-28 127.5 99 67.7
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 8.1e-28 127.1 107 63.6
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.1e-27 126.7 89 67.4
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 1.4e-27 126.3 107 63.6
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 1.4e-27 126.3 107 63.6
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.4e-27 126.3 105 65.7
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 2.4e-27 125.6 107 62.6
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.4e-27 125.6 99 67.7
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 3.1e-27 125.2 94 69.1
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 3.1e-27 125.2 105 64.8
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 4.0e-27 124.8 107 63.6
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 4.0e-27 124.8 107 63.6
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 4.0e-27 124.8 107 63.6
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 6.9e-27 124.0 95 65.3
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 1.2e-26 123.2 107 62.6
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 1.5e-26 122.9 89 68.5
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 1.5e-26 122.9 107 63.6
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 2.0e-26 122.5 108 63.9
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 3.4e-26 121.7 107 60.7
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 3.4e-26 121.7 93 68.8
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 4.5e-26 121.3 97 63.9
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 9.9e-26 120.2 95 66.3
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 9.9e-26 120.2 107 57.9
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 2.2e-25 119.0 108 57.4
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 4.2e-24 114.8 97 56.7
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 7.1e-24 114.0 107 59.8
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 1.2e-23 113.2 104 58.7
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 2.1e-23 112.5 106 58.5
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 3.5e-23 111.7 91 62.6
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 6.0e-23 110.9 107 58.9
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 1.3e-22 109.8 107 57.9
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 3.9e-22 108.2 108 55.6
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 5.1e-22 107.8 88 61.4
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.9e-21 105.9 78 65.4
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 5.6e-21 104.4 75 74.7
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 9.6e-21 103.6 108 54.6
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 1.8e-19 99.4 75 72.0
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 1.1e-16 90.1 55 74.5
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 1.1e-16 90.1 73 61.6
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 4.2e-16 88.2 66 68.2
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 9.3e-16 87.0 83 54.2
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 1.6e-15 86.3 76 67.1
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 3.5e-15 85.1 76 63.2
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 6.0e-15 84.3 97 47.4
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 3.9e-14 81.6 86 52.3
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 6.7e-14 80.9 62 66.1
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 8.7e-14 80.5 58 72.4
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 8.7e-14 80.5 58 67.2
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 1.3e-12 76.6 74 59.5
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 4.0e-11 71.6 83 50.6
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 3.4e-10 68.6 70 60.0
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 1.1e-08 63.5 67 47.8


User provided reference genes

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