Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 0.0e+00 1154.0 588 100.0
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 5.9e-205 718.0 578 69.0
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 1.0e-201 707.2 605 66.4
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 3.5e-165 585.9 692 51.7
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 3.5e-165 585.9 700 50.6
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 1.4e-153 547.4 637 51.0
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.4e-152 542.7 691 48.6
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 6.0e-149 531.9 699 47.1
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 7.8e-149 531.6 691 46.0
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 3.1e-145 519.6 704 46.7
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 1.2e-144 517.7 722 46.1
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 1.0e-140 504.6 686 45.9
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 4.3e-139 499.2 695 46.0
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 6.9e-137 491.9 698 45.7
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 1.0e-135 488.0 702 45.4
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.3e-135 487.6 705 44.8
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 3.8e-135 486.1 692 45.8
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 9.3e-134 481.5 646 47.5
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 9.3e-134 481.5 522 51.0
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 1.3e-132 477.6 697 44.8
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 5.1e-132 475.7 613 46.8
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.1e-131 474.6 530 49.2
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 3.3e-131 473.0 559 47.6
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 9.6e-131 471.5 706 45.2
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 9.6e-131 471.5 689 44.7
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 1.6e-130 470.7 597 46.9
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 6.2e-130 468.8 561 47.8
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 1.1e-129 468.0 702 43.4
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.1e-129 468.0 542 48.3
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 5.3e-129 465.7 636 45.0
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 4.5e-128 462.6 635 45.8
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 5.0e-127 459.1 614 44.0
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 6.5e-127 458.8 304 72.4
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 8.4e-127 458.4 614 43.6
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 1.1e-126 458.0 685 42.9
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 4.2e-126 456.1 537 48.6
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 5.5e-126 455.7 301 72.4
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.2e-125 454.5 305 73.1
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 6.1e-125 452.2 661 45.5
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 3.0e-124 449.9 535 49.0
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 5.1e-124 449.1 661 44.0
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 6.7e-124 448.7 535 48.6
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 6.7e-124 448.7 706 43.2
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 1.5e-123 447.6 685 43.6
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 9.7e-123 444.9 699 42.5
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 4.8e-122 442.6 472 50.6
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 8.2e-122 441.8 299 70.6
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 1.8e-121 440.7 572 46.0
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 5.3e-121 439.1 665 42.7
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 5.3e-121 439.1 986 35.4
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 6.9e-121 438.7 305 69.5
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 1.2e-120 438.0 704 40.3
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 2.0e-120 437.2 701 41.5
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 7.7e-120 435.3 699 41.5
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 7.7e-120 435.3 712 40.7
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 7.7e-120 435.3 696 40.8
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 2.9e-119 433.3 639 42.1
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 2.9e-119 433.3 675 42.2
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 2.5e-118 430.3 552 47.3
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 2.5e-118 430.3 703 40.4
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 4.2e-118 429.5 527 46.5
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 5.5e-118 429.1 564 46.8
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 7.2e-118 428.7 666 42.2
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 7.2e-118 428.7 603 44.3
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 3.6e-117 426.4 700 41.3
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 6.1e-117 425.6 700 41.4
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 1.0e-116 424.9 604 43.4
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 7.4e-115 418.7 305 67.5
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 9.7e-115 418.3 543 46.0
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 1.3e-114 417.9 303 66.7
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 1.7e-114 417.5 707 40.0
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 6.3e-114 415.6 610 42.1
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 3.1e-113 413.3 712 40.3
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 6.9e-113 412.1 554 46.4
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 3.4e-112 409.8 681 41.1
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 4.5e-112 409.5 576 43.9
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 1.0e-111 408.3 587 44.3
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 1.4e-110 404.4 689 40.2
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 4.2e-110 402.9 669 41.6
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 4.2e-110 402.9 579 42.7
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 9.4e-110 401.7 583 44.8
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 2.0e-107 394.0 679 40.9
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.3e-103 381.3 749 38.1
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.2e-103 380.6 719 37.7
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 1.1e-102 378.3 307 60.6
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 4.2e-102 376.3 299 62.9
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 9.4e-102 375.2 645 38.6
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 2.7e-101 373.6 311 56.6
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 3.6e-101 373.2 315 57.5
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 3.3e-99 366.7 584 41.6
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 3.7e-98 363.2 556 39.9
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 6.3e-98 362.5 315 58.7
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 2.4e-97 360.5 495 45.5
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 4.1e-97 359.8 614 39.4
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 7.7e-96 355.5 224 72.3
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 1.3e-95 354.8 586 38.1
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.2e-95 354.0 686 38.0
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 3.8e-95 353.2 621 38.8
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 7.0e-89 332.4 269 61.7
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.2e-87 327.4 235 67.2
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.2e-82 310.8 498 39.0
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 1.1e-81 308.5 305 50.8
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 4.2e-78 296.6 600 38.2
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 1.2e-75 288.5 313 48.2
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 5.4e-73 279.6 762 32.5
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 2.8e-69 267.3 203 65.0
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 4.4e-67 260.0 245 52.7
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 1.7e-66 258.1 272 50.4
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.2e-64 251.9 154 77.9
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.9e-58 229.9 537 34.8
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 1.1e-57 228.8 320 39.4
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 5.1e-55 219.9 519 32.9
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 1.1e-54 218.8 306 39.9
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.6e-51 207.6 149 68.5
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 1.4e-44 185.3 329 33.1
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 1.4e-41 175.3 164 56.7
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 7.1e-41 172.9 242 41.7
Cc00_g27110 Coffea canephora HOM05D065404 ORTHO05D154666 5.1e-39 166.8 129 76.0
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 5.1e-39 166.8 138 60.1
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 8.7e-39 166.0 87 90.8
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 1.1e-33 149.1 451 31.9
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.4e-33 147.9 81 84.0
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.3e-30 137.5 522 30.3
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 5.3e-28 130.2 90 64.4
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 6.9e-28 129.8 83 74.7
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 2.6e-27 127.9 132 50.8
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 8.4e-26 122.9 70 78.6
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 6.0e-24 116.7 253 36.8
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 7.9e-24 116.3 111 55.9
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 2.3e-23 114.8 501 27.3
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 8.7e-23 112.8 202 39.1
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.8e-18 97.4 83 60.2
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.4e-17 95.5 186 33.9
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 7.1e-17 93.2 86 57.0
Cc06_g22140 Coffea canephora HOM05D065404 ORTHO05D153190 7.9e-16 89.7 46 97.8
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 2.3e-15 88.2 273 33.0
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 5.1e-15 87.0 77 58.4
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 6.7e-15 86.7 209 36.4
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 5.7e-14 83.6 240 34.6
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.3e-13 82.4 85 57.6
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 6.5e-10 70.1 38 78.9
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.3e-07 62.4 125 40.0
Rhsim03G0091700 Rhododendron simsii HOM05D000751 ORTHO05D340051 1.9e-06 58.5 35 68.6
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 2.5e-06 58.2 33 75.8
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 5.7e-06 57.0 83 39.8
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 9.7e-06 56.2 110 33.6


User provided reference genes

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