Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 2817.0 1429 100.0
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1701.0 1388 65.8
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1651.3 1383 64.1
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1608.6 1379 63.8
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1603.6 1390 63.5
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1598.2 1378 63.7
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1572.8 1358 61.9
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1560.0 1386 61.3
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1550.4 1380 61.2
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1547.7 1373 61.1
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1530.0 1399 59.8
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1528.8 1379 60.0
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1525.8 1419 61.0
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1523.8 1379 60.0
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1521.9 1390 60.5
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1521.9 1384 60.8
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1521.1 1385 60.9
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1520.8 1383 60.4
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1515.4 1375 60.4
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1511.5 1375 59.9
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1510.0 1379 60.0
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1503.0 1364 60.3
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1499.6 1382 60.0
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1492.6 1351 59.7
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1491.1 1393 59.2
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1488.8 1363 60.2
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1487.6 1390 59.0
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1483.8 1401 58.8
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1483.8 1343 59.9
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1476.5 1402 58.6
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1476.1 1387 59.0
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1474.1 1390 58.8
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1473.4 1391 58.4
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1471.8 1382 57.8
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1466.1 1397 57.9
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1456.0 1389 58.0
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1447.2 1387 57.9
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1446.8 1371 59.2
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1444.5 1374 57.3
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1442.6 1379 57.7
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1442.6 1384 57.7
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1441.8 1400 56.9
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1439.9 1368 57.3
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1437.6 1403 57.7
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1434.9 1242 62.5
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1423.7 1376 56.8
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1413.7 1457 55.3
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1412.9 1369 57.0
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1394.4 1372 57.0
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1387.9 1303 58.6
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1376.3 1380 56.2
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1375.5 1375 56.4
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1369.4 1360 57.0
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1366.7 1371 57.3
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1365.5 1377 57.0
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1365.1 1387 54.7
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1361.7 1380 55.2
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1354.0 1380 55.4
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1353.6 1165 63.2
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1351.3 1400 56.0
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1350.1 1397 55.3
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1345.5 1284 58.3
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1340.5 1287 57.6
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1327.4 1392 54.8
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1312.7 1382 54.5
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1302.7 1150 61.2
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1294.3 1348 54.2
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1284.2 1362 54.0
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1281.2 1383 53.4
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1279.6 1387 53.6
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1276.2 1353 55.3
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1273.8 1357 54.5
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1273.5 1390 52.0
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1273.5 1340 54.3
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1273.5 1367 54.3
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1271.9 1379 53.6
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1262.7 1359 54.4
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1246.9 1359 54.0
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1245.0 1361 53.9
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1241.5 1366 52.7
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1241.5 1357 53.0
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1239.9 1074 63.6
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1239.6 1349 53.9
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1231.9 1361 53.4
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1231.5 1361 53.4
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1230.7 1125 60.4
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1229.5 1344 52.8
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1217.2 1356 50.4
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1198.0 1365 50.8
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1161.4 1104 58.3
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 0.0e+00 1083.2 1356 48.8
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 0.0e+00 1075.5 1110 55.1
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 2.5e-310 1069.3 805 68.1
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 4.1e-292 1008.8 1211 50.3
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 7.7e-283 978.0 1319 45.6
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 1.6e-275 953.7 1044 52.4
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 4.2e-273 945.7 931 56.7
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 1.7e-242 844.0 1423 39.4
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 1.5e-238 830.9 1391 39.8
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 8.1e-232 808.5 994 50.1
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 4.4e-230 802.7 1434 39.4
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 6.0e-203 712.6 1429 34.6
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 7.9e-187 659.1 728 50.3
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 7.4e-177 625.9 435 71.7
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 4.9e-152 543.5 1750 29.2
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 4.2e-148 530.4 892 40.4
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 5.9e-142 510.0 647 49.6
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 4.4e-137 493.8 601 50.6
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 2.9e-136 491.1 580 50.7
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 6.4e-136 490.0 435 61.6
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 3.0e-133 481.1 346 67.9
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 6.8e-114 416.8 336 65.2
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 1.1e-111 409.5 1348 29.5
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 1.9e-84 318.9 340 54.4
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 7.4e-76 290.4 760 34.7
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 9.7e-68 263.5 398 42.2
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 3.4e-65 255.0 1115 25.8
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 4.8e-59 234.6 259 53.3
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 2.0e-49 202.6 129 75.2
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 2.4e-42 179.1 167 57.5
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 1.1e-18 100.5 69 69.6
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 1.4e-18 100.1 59 79.7
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 3.5e-17 95.5 66 66.7
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 3.0e-16 92.4 101 50.5
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 5.0e-16 91.7 59 72.9
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 4.7e-14 85.1 102 49.0
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 2.7e-09 69.3 58 56.9
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 2.3e-08 66.2 84 46.4


User provided reference genes

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