Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g10540 Coffea canephora HOM05D004492 ORTHO05D005602 1.1e-90 336.7 168 100.0
Dinv27371 Davidia involucrata HOM05D004492 ORTHO05D005602 5.9e-57 224.6 148 74.3
CAN.G1396.8 Capsicum annuum HOM05D004492 ORTHO05D005602 8.5e-56 220.7 148 73.0
HanXRQChr05g0149221 Helianthus annuus HOM05D004492 ORTHO05D005602 5.5e-55 218.0 148 69.6
Sopen06g020530 Solanum pennellii HOM05D004492 ORTHO05D005602 7.2e-55 217.6 148 72.3
Solyc06g060390.3 Solanum lycopersicum HOM05D004492 ORTHO05D005602 9.4e-55 217.2 146 72.6
MSTRG.25402 Avicennia marina HOM05D004492 ORTHO05D005602 2.1e-54 216.1 148 68.2
PGSC0003DMG400017559 Solanum tuberosum HOM05D004492 ORTHO05D005602 2.7e-54 215.7 148 70.9
Lsat_1_v5_gn_6_109160 Lactuca sativa HOM05D004492 ORTHO05D005602 6.1e-54 214.5 148 68.9
Oeu047923.1 Olea europaea HOM05D004492 ORTHO05D005602 6.1e-54 214.5 161 64.0
Nitab4.5_0004882g0030 Nicotiana tabacum HOM05D004492 ORTHO05D005602 7.9e-54 214.2 146 71.9
Migut.C01175 Erythranthe guttata HOM05D004492 ORTHO05D005602 1.0e-53 213.8 148 68.9
SalBow7G0677 Salvia bowleyana HOM05D004492 ORTHO05D005602 3.9e-53 211.8 148 67.6
QL09p035929 Quercus lobata HOM05D004492 ORTHO05D005602 5.1e-53 211.5 148 72.3
Actinidia29442 Actinidia chinensis HOM05D004492 ORTHO05D005602 6.7e-53 211.1 148 70.9
ECA246G3183 Erigeron canadensis HOM05D004492 ORTHO05D005602 1.5e-52 209.9 148 68.2
TAR625G1407 Trochodendron aralioides HOM05D004492 ORTHO05D005602 1.5e-52 209.9 147 74.1
Manes.18G073743 Manihot esculenta HOM05D004492 ORTHO05D005602 2.0e-52 209.5 148 70.9
Sc23g0000850 Simmondsia chinensis HOM05D004492 ORTHO05D005602 3.3e-52 208.8 153 68.0
Nitab4.5_0000633g0160 Nicotiana tabacum HOM05D004492 ORTHO05D005602 4.3e-52 208.4 146 68.5
CiPaw.06G026300 Carya illinoinensis HOM05D004492 ORTHO05D005602 7.4e-52 207.6 148 70.3
DCAR_002659 Daucus carota HOM05D004492 ORTHO05D005602 7.4e-52 207.6 147 68.0
Nn5g28099 Nelumbo nucifera HOM05D004492 ORTHO05D005602 1.3e-51 206.8 148 70.9
Atru.chr13.1338 Acer truncatum HOM05D004492 ORTHO05D005602 2.2e-51 206.1 148 69.6
Atru.chr13.1381 Acer truncatum HOM05D004492 ORTHO05D005602 2.2e-51 206.1 148 69.6
THA.LOC104813139 Tarenaya hassleriana HOM05D004492 ORTHO05D005602 3.7e-51 205.3 148 68.9
Prupe.1G503800 Prunus persica HOM05D004492 ORTHO05D005602 4.8e-51 204.9 148 68.9
GSVIVG01008928001 Vitis vinifera HOM05D004492 ORTHO05D005602 8.2e-51 204.1 148 69.6
TWI12G1231 Tripterygium wilfordii HOM05D004492 ORTHO05D005602 1.1e-50 203.8 148 68.9
Haze_00500 Corylus avellana HOM05D004492 ORTHO05D005602 5.3e-50 201.4 188 59.0
Cpa.g.sc36.10 Carica papaya HOM05D004492 ORTHO05D005602 6.9e-50 201.1 148 66.2
Duzib093G1652 Durio zibethinus HOM05D004492 ORTHO05D005602 6.9e-50 201.1 148 68.2
Migut.C01177 Erythranthe guttata HOM05D004492 ORTHO05D005602 6.9e-50 201.1 148 66.9
Gohir.D02G081500 Gossypium hirsutum HOM05D004492 ORTHO05D005602 1.5e-49 199.9 148 68.2
Lj1g0007587 Lotus japonicus HOM05D004492 ORTHO05D005602 1.5e-49 199.9 149 65.8
SalBow7G1607 Salvia bowleyana HOM05D004492 ORTHO05D005602 1.5e-49 199.9 137 67.2
PSO170G3797 Papaver somniferum HOM05D004492 ORTHO05D005602 2.0e-49 199.5 147 66.7
Thecc.08G118700 Theobroma cacao HOM05D004492 ORTHO05D005602 2.0e-49 199.5 148 68.2
Gorai.005G091200 Gossypium raimondii HOM05D004492 ORTHO05D005602 2.6e-49 199.1 150 66.0
Potri.005G173100 Populus trichocarpa HOM05D004492 ORTHO05D005602 2.6e-49 199.1 150 65.3
Sp3g31340 Schrenkiella parvula HOM05D004492 ORTHO05D005602 2.6e-49 199.1 153 65.4
Rhsim11G0066100 Rhododendron simsii HOM05D004492 ORTHO05D005602 3.4e-49 198.7 183 60.1
Aa31LG9G14390 Aethionema arabicum HOM05D004492 ORTHO05D005602 1.0e-48 197.2 148 64.9
arahy.Tifrunner.gnm1.ann1.WF7TJ5 Arachis hypogaea HOM05D004492 ORTHO05D005602 1.0e-48 197.2 148 66.9
arahy.Tifrunner.gnm1.ann1.Y35QAD Arachis hypogaea HOM05D004492 ORTHO05D005602 1.7e-48 196.4 159 62.9
MD15G1356600 Malus domestica HOM05D004492 ORTHO05D005602 5.0e-48 194.9 148 66.2
BcaB03g16570 Brassica carinata HOM05D004492 ORTHO05D005602 6.5e-48 194.5 153 64.7
AT2G17900 Arabidopsis thaliana HOM05D004492 ORTHO05D005602 8.5e-48 194.1 148 64.2
CANSAT11G0049 Cannabis sativa HOM05D004492 ORTHO05D005602 8.5e-48 194.1 148 61.5
CsaV3_5G023260 Cucumis sativus L. HOM05D004492 ORTHO05D005602 1.1e-47 193.7 147 64.6
Cfa015974 Carpinus fangiana HOM05D004492 ORTHO05D005602 2.5e-47 192.6 176 60.8
Gohir.A02G074300 Gossypium hirsutum HOM05D004492 ORTHO05D005602 2.5e-47 192.6 148 66.2
AL3G50940 Arabidopsis lyrata HOM05D004492 ORTHO05D005602 5.5e-47 191.4 148 63.5
CARHR108400 Cardamine hirsuta HOM05D004492 ORTHO05D005602 7.2e-47 191.0 148 62.2
Peaxi162Scf00051g00731 Petunia axillaris HOM05D004492 ORTHO05D005602 9.4e-47 190.7 145 63.4
MELO3C003048.2 Cucumis melo HOM05D004492 ORTHO05D005602 1.2e-46 190.3 147 63.3
Medtr3g073000 Medicago truncatula HOM05D004492 ORTHO05D005602 1.2e-46 190.3 148 64.2
Aqoxy5G02431 Aquilegia oxysepala HOM05D004492 ORTHO05D005602 2.1e-46 189.5 146 64.4
Lalb_Chr08g0241631 Lupinus albus HOM05D004492 ORTHO05D005602 2.1e-46 189.5 148 62.2
BraA07t28100Z Brassica rapa HOM05D004492 ORTHO05D005602 3.6e-46 188.7 153 64.1
AUR62004708 Chenopodium quinoa HOM05D004492 ORTHO05D005602 3.6e-46 188.7 147 66.7
AUR62030552 Chenopodium quinoa HOM05D004492 ORTHO05D005602 3.6e-46 188.7 155 63.9
unitig_46.g18495 Utricularia gibba HOM05D004492 ORTHO05D005602 4.7e-46 188.3 148 57.4
Carub.0003s3205 Capsella rubella HOM05D004492 ORTHO05D005602 6.1e-46 188.0 148 61.5
A07p03030 Brassica napus HOM05D004492 ORTHO05D005602 1.4e-45 186.8 153 63.4
COL.COLO4_38233 Corchorus olitorius HOM05D004492 ORTHO05D005602 1.4e-45 186.8 142 64.1
Thhalv10022664m.g Eutrema salsugineum HOM05D004492 ORTHO05D005602 1.8e-45 186.4 153 60.1
BcaC06g36340 Brassica carinata HOM05D004492 ORTHO05D005602 3.0e-45 185.7 148 63.5
SGA_v2.0_scaffold52G19008 Striga asiatica HOM05D004492 ORTHO05D005602 3.0e-45 185.7 131 65.6
C07p05160 Brassica napus HOM05D004492 ORTHO05D005602 5.1e-45 184.9 148 63.5
BolC7t40914H Brassica oleracea HOM05D004492 ORTHO05D005602 5.1e-45 184.9 148 63.5
RcHm_v2.0_Chr6g0294891 Rosa chinensis HOM05D004492 ORTHO05D005602 5.1e-45 184.9 148 60.8
Ah.05g172340 Amaranthus hybridus HOM05D004492 ORTHO05D005602 6.7e-45 184.5 153 60.8
PGR042G0918 Punica granatum HOM05D004492 ORTHO05D005602 8.8e-45 184.1 148 61.5
Psat5g133640 Pisum sativum HOM05D004492 ORTHO05D005602 1.1e-44 183.7 148 62.8
Sed0009263 Sechium edule HOM05D004492 ORTHO05D005602 2.6e-44 182.6 147 59.9
FvH4_2g26280 Fragaria vesca HOM05D004492 ORTHO05D005602 3.3e-44 182.2 148 61.5
FAN24G0496 Fragaria x ananassa HOM05D004492 ORTHO05D005602 5.7e-44 181.4 148 61.5
TPR.G22341 Trifolium pratense HOM05D004492 ORTHO05D005602 9.7e-44 180.6 148 60.8
Glyma.04G252800 Glycine max HOM05D004492 ORTHO05D005602 1.3e-43 180.3 151 59.6
Phvul.009G121500 Phaseolus vulgaris HOM05D004492 ORTHO05D005602 3.7e-43 178.7 149 59.1
Eucgr.G00611 Eucalyptus grandis HOM05D004492 ORTHO05D005602 1.8e-42 176.4 149 58.4
Sabra05G0130600 Salix brachista HOM05D004492 ORTHO05D005602 5.3e-42 174.9 137 63.5
ClCG03G009360 Citrullus lanatus HOM05D004492 ORTHO05D005602 1.2e-41 173.7 177 52.0
Ciclev10001105m.g Citrus clementina HOM05D004492 ORTHO05D005602 2.6e-41 172.6 114 74.6
EL10Ac1g00021 Beta vulgaris HOM05D004492 ORTHO05D005602 3.5e-41 172.2 148 62.2
Os03g0704200 Oryza sativa ssp. japonica HOM05D004492 ORTHO05D005602 1.1e-39 167.2 138 57.2
RcHm_v2.0_Chr6g0294881 Rosa chinensis HOM05D004492 ORTHO05D005602 1.1e-39 167.2 148 56.1
VMungo1309G2182 Vigna mungo HOM05D004492 ORTHO05D005602 4.2e-39 165.2 183 49.7
HPP92_009359 Vanilla planifolia HOM05D004492 ORTHO05D005602 1.6e-38 163.3 153 54.2
FAN24G3351 Fragaria x ananassa HOM05D004492 ORTHO05D005602 2.6e-36 156.0 148 50.7
Zm00001eb216690 Zea mays HOM05D004492 ORTHO05D005602 2.6e-36 156.0 148 52.7
ATR0684G004 Amborella trichopoda HOM05D004492 ORTHO05D005602 3.1e-34 149.1 149 53.0
Thecc.08G119200 Theobroma cacao HOM05D004492 ORTHO05D005602 3.1e-34 149.1 147 50.3
Thecc.08G118900 Theobroma cacao HOM05D004492 ORTHO05D005602 5.3e-34 148.3 146 50.0
Hund27046 Selenicereus undatus HOM05D004492 ORTHO05D005602 2.7e-33 146.0 153 51.6
Thecc.08G119000 Theobroma cacao HOM05D004492 ORTHO05D005602 2.7e-33 146.0 147 49.7
AagrBONN_evm.TU.Sc2ySwM_344.3949 Anthoceros agrestis HOM05D004492 ORTHO05D005602 1.7e-32 143.3 138 54.3
COL.COLO4_38230 Corchorus olitorius HOM05D004492 ORTHO05D005602 1.9e-31 139.8 114 55.3
COL.COLO4_38232 Corchorus olitorius HOM05D004492 ORTHO05D005602 3.2e-31 139.0 161 45.3
Thecc.08G119400 Theobroma cacao HOM05D004492 ORTHO05D005602 7.2e-31 137.9 137 48.9
Thecc.08G119300 Theobroma cacao HOM05D004492 ORTHO05D005602 1.0e-29 134.0 154 46.1
FAN27G1826 Fragaria x ananassa HOM05D004492 ORTHO05D005602 3.4e-28 129.0 148 45.9
Mapoly0101s0047 Marchantia polymorpha HOM05D004492 ORTHO05D005602 1.3e-27 127.1 134 45.5
Pp3c19_7630 Physcomitrium patens HOM05D004492 ORTHO05D005602 1.3e-27 127.1 146 42.5
FAN15G1155 Fragaria x ananassa HOM05D004492 ORTHO05D005602 1.0e-24 117.5 156 41.7
SMO116G0295 Selaginella moellendorffii HOM05D004492 ORTHO05D005602 1.6e-22 110.2 146 39.7
CBR_g16883 Chara braunii HOM05D004492 ORTHO05D001303 2.3e-21 106.3 133 39.8
FvH4_2g03790 Fragaria vesca HOM05D000030 ORTHO05D000009 1.4e-18 97.1 91 52.7
Thecc.08G118800 Theobroma cacao HOM05D004492 ORTHO05D005602 4.5e-17 92.0 103 45.6
SHI09395 Sapria himalayana HOM05D004492 ORTHO05D000001 7.3e-15 84.7 114 40.4
AUR62023625 Chenopodium quinoa HOM05D004492 ORTHO05D005602 2.9e-11 72.8 161 40.4
FvH4_2g26270 Fragaria vesca HOM05D004492 ORTHO05D005602 3.7e-11 72.4 72 47.2
FAN15G1996 Fragaria x ananassa HOM05D004492 ORTHO05D005602 5.4e-10 68.6 53 60.4
Migut.C01176 Erythranthe guttata HOM05D004492 ORTHO05D005602 7.8e-09 64.7 63 55.6
SHI09394 Sapria himalayana HOM05D004492 ORTHO05D000001 4.3e-07 58.9 53 52.8


User provided reference genes

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