Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 5.4e-40 167.2 81 100.0
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 1.8e-35 152.1 81 93.8
Cc10_g10240 Coffea canephora HOM05D007628 ORTHO05D007342 2.4e-24 115.2 80 73.8
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 3.0e-14 81.6 81 49.4
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 3.9e-14 81.3 77 48.1
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 6.6e-14 80.5 77 50.6
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 6.6e-14 80.5 76 50.0
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 8.6e-14 80.1 82 50.0
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 8.6e-14 80.1 83 51.8
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 1.1e-13 79.7 83 51.8
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.1e-13 79.7 83 51.8
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 1.1e-13 79.7 78 51.3
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 1.5e-13 79.3 81 50.6
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 1.9e-13 79.0 76 48.7
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.9e-13 79.0 81 48.1
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 3.3e-13 78.2 64 56.2
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 3.3e-13 78.2 80 52.5
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 3.3e-13 78.2 77 46.8
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.3e-13 77.8 74 52.7
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 4.3e-13 77.8 84 53.6
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 7.3e-13 77.0 78 51.3
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 7.3e-13 77.0 77 53.2
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 9.5e-13 76.6 81 50.6
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 1.2e-12 76.3 75 49.3
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.2e-12 76.3 82 50.0
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 1.6e-12 75.9 78 52.6
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 2.1e-12 75.5 72 48.6
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.1e-12 75.5 81 45.7
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.6e-12 74.7 74 51.4
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.6e-12 74.7 78 51.3
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 4.7e-12 74.3 82 48.8
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.7e-12 74.3 75 48.0
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.7e-12 74.3 75 48.0
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 4.7e-12 74.3 82 47.6
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 6.2e-12 73.9 79 48.1
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 8.1e-12 73.6 82 47.6
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 8.1e-12 73.6 79 49.4
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 8.1e-12 73.6 80 50.0
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 8.1e-12 73.6 76 50.0
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 8.1e-12 73.6 77 51.9
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 8.1e-12 73.6 56 58.9
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 1.1e-11 73.2 77 49.4
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.4e-11 72.8 54 53.7
Nitab4.5_0006133g0030 Nicotiana tabacum HOM05D008200 ORTHO05D007342 2.3e-11 72.0 81 48.1
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 3.1e-11 71.6 75 45.3
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 3.1e-11 71.6 81 46.9
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 4.0e-11 71.2 57 50.9
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 5.2e-11 70.9 68 50.0
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 6.8e-11 70.5 74 41.9
Peaxi162Scf00268g00024 Petunia axillaris HOM05D008200 ORTHO05D007342 8.9e-11 70.1 81 45.7
Solyc06g065073.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 1.5e-10 69.3 82 47.6
Sopen06g023600 Solanum pennellii HOM05D008200 ORTHO05D010849 1.5e-10 69.3 82 47.6
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 1.5e-10 69.3 78 43.6
PGSC0003DMG400031328 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.0e-10 68.9 82 47.6
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 5.8e-10 67.4 79 49.4
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 5.8e-10 67.4 74 45.9
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 5.8e-10 67.4 74 45.9
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 1.3e-09 66.2 79 49.4
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 2.2e-09 65.5 77 42.9
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 2.2e-09 65.5 74 47.3
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 2.9e-09 65.1 64 51.6
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 2.9e-09 65.1 61 54.1
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 3.7e-09 64.7 74 45.9
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 4.9e-09 64.3 64 50.0
Rhsim06G0114500 Rhododendron simsii HOM05D007628 ORTHO05D007342 6.4e-09 63.9 73 47.9
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 1.1e-08 63.2 75 41.3
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 2.4e-08 62.0 80 46.2
Peaxi162Scf00391g00728 Petunia axillaris HOM05D008200 ORTHO05D010849 3.2e-08 61.6 81 46.9
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 4.1e-08 61.2 67 47.8
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 9.2e-08 60.1 65 49.2
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 1.2e-07 59.7 78 44.9
Solyc03g020030.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.2e-07 59.7 48 56.2
Solyc03g020040.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.2e-07 59.7 48 56.2
Sopen03g029600 Solanum pennellii HOM05D008200 ORTHO05D010849 1.2e-07 59.7 48 56.2
TPR.G34171 Trifolium pratense HOM05D007628 ORTHO05D007342 1.6e-07 59.3 70 48.6
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 2.7e-07 58.5 82 41.5
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 2.7e-07 58.5 71 39.4
PGSC0003DMG400015287 Solanum tuberosum HOM05D008200 ORTHO05D010849 4.6e-07 57.8 48 54.2
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 6.0e-07 57.4 77 37.7
Sopen11g011140 Solanum pennellii HOM05D008200 ORTHO05D010849 7.8e-07 57.0 70 42.9
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 1.0e-06 56.6 45 57.8
PGSC0003DMG400004548 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.0e-06 56.6 55 50.9
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 1.7e-06 55.8 77 45.5
PGSC0003DMG400015290 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.7e-06 55.8 55 49.1
Solyc03g020050.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 2.3e-06 55.5 55 49.1
Sopen03g029540 Solanum pennellii HOM05D008200 ORTHO05D010849 2.3e-06 55.5 50 54.0
Sopen03g029570 Solanum pennellii HOM05D008200 ORTHO05D010849 2.3e-06 55.5 55 49.1
CAN.G861.41 Capsicum annuum HOM05D008200 ORTHO05D010849 3.9e-06 54.7 55 47.3
PGSC0003DMG400015289 Solanum tuberosum HOM05D008200 ORTHO05D010849 3.9e-06 54.7 55 49.1
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 6.6e-06 53.9 68 47.1
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 6.6e-06 53.9 59 42.4
Solyc03g020060.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 8.6e-06 53.5 50 52.0


User provided reference genes

Program Settings