Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g09910 Coffea canephora HOM05D003659 ORTHO05D004298 4.9e-73 277.7 141 100.0
Cc10_g10650 Coffea canephora HOM05D003659 ORTHO05D004298 2.1e-63 245.7 147 87.8
Cc07_g20440 Coffea canephora HOM05D003659 ORTHO05D004298 3.3e-61 238.4 127 92.9
Cc08_g06110 Coffea canephora HOM05D003659 ORTHO05D004298 1.4e-59 233.0 127 92.1
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 4.9e-57 224.6 117 94.9
Cc00_g05940 Coffea canephora HOM05D003659 ORTHO05D004298 1.9e-56 222.6 121 88.4
Cc05_g03490 Coffea canephora HOM05D003659 ORTHO05D004298 7.1e-56 220.7 118 90.7
Cc05_g01640 Coffea canephora HOM05D003659 ORTHO05D004298 1.1e-51 206.8 122 86.1
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 3.1e-51 205.3 117 87.2
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 4.0e-51 204.9 117 82.9
Actinidia18243 Actinidia chinensis HOM05D003659 ORTHO05D004298 2.0e-50 202.6 117 85.5
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 4.5e-50 201.4 117 87.2
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 4.5e-50 201.4 117 87.2
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 1.7e-49 199.5 117 81.2
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 3.8e-49 198.4 117 81.2
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 3.8e-49 198.4 117 82.9
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 6.4e-49 197.6 117 81.2
Cc08_g07620 Coffea canephora HOM05D003659 ORTHO05D004298 1.4e-48 196.4 99 97.0
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 1.4e-48 196.4 117 80.3
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 1.9e-48 196.1 117 80.3
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 1.9e-48 196.1 120 80.8
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 2.4e-48 195.7 118 78.0
MSTRG.11175 Avicennia marina HOM05D003659 ORTHO05D004298 9.3e-48 193.7 117 80.3
Rhsim08G0207200 Rhododendron simsii HOM05D003659 ORTHO05D004298 1.2e-47 193.4 117 80.3
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 2.7e-47 192.2 117 80.3
Hund06525 Selenicereus undatus HOM05D003659 ORTHO05D004298 2.7e-47 192.2 117 77.8
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 3.5e-47 191.8 117 79.5
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 3.5e-47 191.8 119 77.3
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 3.5e-47 191.8 119 79.0
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 4.6e-47 191.4 118 77.1
Peaxi162Scf00332g00435 Petunia axillaris HOM05D003659 ORTHO05D004298 1.0e-46 190.3 117 81.2
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 1.3e-46 189.9 122 77.9
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 2.3e-46 189.1 121 74.4
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 2.3e-46 189.1 117 80.3
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 3.0e-46 188.7 119 75.6
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 3.9e-46 188.3 117 78.6
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 3.9e-46 188.3 117 77.8
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 3.9e-46 188.3 117 79.5
Cc00_g06440 Coffea canephora HOM05D003659 ORTHO05D004298 6.7e-46 187.6 121 78.5
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 1.1e-45 186.8 118 78.0
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 1.9e-45 186.0 118 78.0
Nitab4.5_0026787g0010 Nicotiana tabacum HOM05D003659 ORTHO05D004298 2.5e-45 185.7 117 78.6
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 7.4e-45 184.1 125 72.0
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 9.6e-45 183.7 119 76.5
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 1.3e-44 183.3 118 75.4
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 1.6e-44 183.0 117 77.8
unitig_0.g1106 Utricularia gibba HOM05D003659 ORTHO05D004298 2.1e-44 182.6 117 73.5
vmacro16858 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 2.1e-44 182.6 118 76.3
Rhsim12G0187700 Rhododendron simsii HOM05D003659 ORTHO05D004298 3.7e-44 181.8 118 76.3
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 4.8e-44 181.4 120 75.8
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 4.8e-44 181.4 118 74.6
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 8.1e-44 180.6 119 72.3
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 1.1e-43 180.3 118 77.1
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 1.1e-43 180.3 118 77.1
Potri.006G263200 Populus trichocarpa HOM05D003659 ORTHO05D004298 1.4e-43 179.9 119 75.6
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 1.8e-43 179.5 121 73.6
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 1.8e-43 179.5 120 74.2
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 6.9e-43 177.6 120 72.5
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 1.2e-42 176.8 123 70.7
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 2.0e-42 176.0 119 71.4
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 3.4e-42 175.3 121 73.6
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 3.4e-42 175.3 119 73.9
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 4.5e-42 174.9 114 76.3
TAR636G3496 Trochodendron aralioides HOM05D003659 ORTHO05D004298 5.8e-42 174.5 117 74.4
Atru.chr7.2534 Acer truncatum HOM05D003659 ORTHO05D004298 1.3e-41 173.3 119 70.6
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 1.3e-41 173.3 122 73.8
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 1.7e-41 172.9 118 72.0
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 1.7e-41 172.9 119 73.9
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 1.7e-41 172.9 117 70.9
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 2.2e-41 172.6 119 71.4
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 2.2e-41 172.6 122 73.8
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 3.8e-41 171.8 117 70.1
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 3.8e-41 171.8 120 70.8
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 3.8e-41 171.8 119 69.7
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 4.9e-41 171.4 121 73.6
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 4.9e-41 171.4 117 70.9
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 4.9e-41 171.4 118 72.0
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 4.9e-41 171.4 119 73.1
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 6.5e-41 171.0 117 70.9
Aa31LG7G12130 Aethionema arabicum HOM05D003659 ORTHO05D004298 1.1e-40 170.2 119 70.6
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 1.1e-40 170.2 119 74.8
Manes.03G010100 Manihot esculenta HOM05D003659 ORTHO05D004298 1.1e-40 170.2 121 70.2
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 1.1e-40 170.2 118 71.2
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 1.9e-40 169.5 119 71.4
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 2.5e-40 169.1 116 68.1
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 3.2e-40 168.7 117 70.1
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 3.2e-40 168.7 117 69.2
Actinidia36884 Actinidia chinensis HOM05D003659 ORTHO05D004298 4.2e-40 168.3 106 77.4
SEGI_01700 Sequoiadendron giganteum HOM05D003659 ORTHO05D004298 4.2e-40 168.3 119 70.6
THA.LOC104803632 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 4.2e-40 168.3 121 71.9
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 5.5e-40 167.9 120 70.0
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 5.5e-40 167.9 119 71.4
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 5.5e-40 167.9 118 70.3
CARHR116580 Cardamine hirsuta HOM05D003659 ORTHO05D004298 7.1e-40 167.5 120 70.0
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 7.1e-40 167.5 119 68.9
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 9.3e-40 167.2 118 71.2
BolC8t51458H Brassica oleracea HOM05D003659 ORTHO05D004298 1.2e-39 166.8 121 69.4
Thhalv10000317m.g Eutrema salsugineum HOM05D003659 ORTHO05D004298 1.2e-39 166.8 121 69.4
BcaB06g28036 Brassica carinata HOM05D003659 ORTHO05D004298 1.6e-39 166.4 121 68.6
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 1.6e-39 166.4 120 69.2
BcaC02g08370 Brassica carinata HOM05D003659 ORTHO05D004298 2.1e-39 166.0 120 69.2
C04p55110 Brassica napus HOM05D003659 ORTHO05D004298 2.1e-39 166.0 120 69.2
BolC4t27050H Brassica oleracea HOM05D003659 ORTHO05D004298 2.1e-39 166.0 120 69.2
AT2G25110 Arabidopsis thaliana HOM05D003659 ORTHO05D004298 2.7e-39 165.6 120 70.0
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 4.6e-39 164.9 120 70.0
AL4G16270 Arabidopsis lyrata HOM05D003659 ORTHO05D004298 6.0e-39 164.5 120 68.3
A04p19520 Brassica napus HOM05D003659 ORTHO05D004298 6.0e-39 164.5 120 69.2
BraA04t17546Z Brassica rapa HOM05D003659 ORTHO05D004298 6.0e-39 164.5 120 69.2
Carub.0004s0471 Capsella rubella HOM05D003659 ORTHO05D004298 6.0e-39 164.5 120 70.0
Sp4g04120 Schrenkiella parvula HOM05D003659 ORTHO05D004298 6.0e-39 164.5 120 69.2
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 7.9e-39 164.1 120 69.2
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 1.0e-38 163.7 119 70.6
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 2.3e-38 162.5 119 68.1
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 2.3e-38 162.5 119 68.1
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 3.0e-38 162.2 125 68.8
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 3.0e-38 162.2 125 68.8
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 3.0e-38 162.2 96 78.1
Sed0006058 Sechium edule HOM05D003659 ORTHO05D004298 3.9e-38 161.8 90 82.2
TPR.G3109 Trifolium pratense HOM05D003659 ORTHO05D004298 1.9e-37 159.5 123 69.1
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 2.5e-37 159.1 85 87.1
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 5.7e-37 157.9 123 65.0
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 5.7e-37 157.9 123 65.0
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 5.7e-37 157.9 123 65.0
SHI18485 Sapria himalayana HOM05D003659 ORTHO05D004298 5.7e-37 157.9 121 65.3
Psat5g032160 Pisum sativum HOM05D003659 ORTHO05D004298 7.4e-37 157.5 123 68.3
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 9.6e-37 157.1 122 64.8
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 9.6e-37 157.1 122 64.8
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 9.6e-37 157.1 122 64.8
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 9.6e-37 157.1 123 64.2
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 3.7e-36 155.2 120 65.0
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 3.7e-36 155.2 120 65.8
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 4.8e-36 154.8 86 82.6
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 6.3e-36 154.5 125 64.0
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 6.3e-36 154.5 126 62.7
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 2.4e-35 152.5 86 80.2
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 2.4e-35 152.5 84 82.1
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 4.1e-35 151.8 87 79.3
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 3.4e-34 148.7 85 77.6
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 4.5e-34 148.3 113 65.5
Medtr3g106130 Medicago truncatula HOM05D003659 ORTHO05D004298 7.6e-34 147.5 143 59.4
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 1.0e-33 147.1 123 63.4
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 1.0e-33 147.1 96 70.8
Pp3c12_21450 Physcomitrium patens HOM05D003659 ORTHO05D004298 2.9e-33 145.6 118 61.0
A09p55870 Brassica napus HOM05D003659 ORTHO05D004298 3.8e-33 145.2 121 61.2
BraA09t40990Z Brassica rapa HOM05D003659 ORTHO05D004298 3.8e-33 145.2 121 61.2
BcaC07g40890 Brassica carinata HOM05D003659 ORTHO05D004298 5.0e-33 144.8 121 61.2
C08p38860 Brassica napus HOM05D003659 ORTHO05D004298 5.0e-33 144.8 121 61.2
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 8.5e-33 144.1 87 72.4
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 1.1e-32 143.7 96 68.8
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 2.5e-32 142.5 88 70.5
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 3.2e-32 142.1 113 64.6
Pp3c4_7140 Physcomitrium patens HOM05D003659 ORTHO05D004298 7.2e-32 141.0 115 59.1
SalBow7G4756 Salvia bowleyana HOM05D003659 ORTHO05D004298 7.2e-32 141.0 75 82.7
CDE02G2060 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 9.3e-32 140.6 75 86.7
COL.COLO4_03628 Corchorus olitorius HOM05D003659 ORTHO05D004298 1.2e-31 140.2 75 85.3
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 1.2e-31 140.2 81 80.2
Cc00_g21920 Coffea canephora HOM05D003659 ORTHO05D004298 1.6e-31 139.8 79 86.1
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 2.7e-31 139.0 119 55.5
SMO304G0007 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 1.3e-30 136.7 110 61.8
Pp3c9_3320 Physcomitrium patens HOM05D003659 ORTHO05D004298 1.3e-28 130.2 118 57.6
SMO340G0294 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 3.7e-28 128.6 85 70.6
CBR_g38858 Chara braunii HOM05D003659 ORTHO05D004298 1.1e-27 127.1 89 66.3
AUR62012468 Chenopodium quinoa HOM05D003659 ORTHO05D004298 7.2e-24 114.4 155 45.2
FvH4_3g15950 Fragaria vesca HOM05D003659 ORTHO05D004298 7.2e-24 114.4 80 68.8
HPP92_010427 Vanilla planifolia HOM05D003659 ORTHO05D004298 4.4e-21 105.1 87 58.6
AUR62031594 Chenopodium quinoa HOM05D003659 ORTHO05D004298 3.7e-20 102.1 94 54.3
MCO11G512 Micromonas commoda HOM05D003659 ORTHO05D004298 1.8e-19 99.8 84 56.0
Cre13.g571750 Chlamydomonas reinhardtii HOM05D003659 ORTHO05D004298 4.1e-19 98.6 96 50.0
FAN11G3099 Fragaria x ananassa HOM05D003659 ORTHO05D004298 6.9e-19 97.8 72 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1898 Anthoceros agrestis HOM05D003659 ORTHO05D004298 8.5e-17 90.9 85 52.9
PRCOL_00006403 Prasinoderma coloniale HOM05D003659 ORTHO05D004298 8.5e-17 90.9 91 44.0
SHI37098 Sapria himalayana HOM05D003659 ORTHO05D004298 9.4e-08 60.8 62 48.4
arahy.Tifrunner.gnm1.ann1.K0Y0BK Arachis hypogaea HOM05D003659 ORTHO05D004298 4.7e-07 58.5 37 70.3
Cfa024390 Carpinus fangiana HOM05D003659 ORTHO05D125208 1.0e-06 57.4 121 33.1
SHI20750 Sapria himalayana HOM05D003659 ORTHO05D004298 4.0e-06 55.5 72 44.4
Cfa024316 Carpinus fangiana HOM05D003659 ORTHO05D124421 6.7e-06 54.7 97 35.1


User provided reference genes

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