Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 5.7e-50 200.7 106 100.0
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.0e-18 95.9 104 56.7
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 2.2e-17 92.4 96 56.2
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.7e-17 91.7 100 55.0
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.9e-17 91.3 96 54.2
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 4.9e-17 91.3 103 50.5
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 4.9e-17 91.3 96 56.2
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 6.4e-17 90.9 99 54.5
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 6.4e-17 90.9 101 53.5
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.1e-15 85.9 101 50.5
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 2.1e-15 85.9 98 50.0
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 2.1e-15 85.9 82 59.8
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 2.7e-15 85.5 107 47.7
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 2.7e-15 85.5 104 50.0
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 2.7e-15 85.5 104 50.0
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 3.5e-15 85.1 76 57.9
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 3.5e-15 85.1 88 53.4
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 4.6e-15 84.7 96 50.0
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 6.0e-15 84.3 72 59.7
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 6.0e-15 84.3 108 47.2
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 6.0e-15 84.3 99 49.5
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 6.0e-15 84.3 99 49.5
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 6.0e-15 84.3 100 47.0
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 6.0e-15 84.3 102 52.9
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 7.8e-15 84.0 100 51.0
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.0e-14 83.6 104 51.0
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 1.0e-14 83.6 94 53.2
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.3e-14 83.2 101 50.5
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 1.3e-14 83.2 88 55.7
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 1.7e-14 82.8 91 53.8
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 1.7e-14 82.8 88 52.3
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 1.7e-14 82.8 101 46.5
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 1.7e-14 82.8 68 63.2
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.3e-14 82.4 76 56.6
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.3e-14 82.4 100 49.0
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 2.3e-14 82.4 65 60.0
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 3.0e-14 82.0 72 58.3
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 3.0e-14 82.0 72 58.3
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 3.0e-14 82.0 72 58.3
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 3.0e-14 82.0 72 58.3
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 3.0e-14 82.0 65 63.1
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.0e-14 82.0 99 50.5
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 3.9e-14 81.6 67 62.7
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 3.9e-14 81.6 97 50.5
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 5.1e-14 81.3 88 50.0
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 5.1e-14 81.3 65 63.1
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 5.1e-14 81.3 63 65.1
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 6.6e-14 80.9 72 58.3
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 6.6e-14 80.9 97 48.5
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 6.6e-14 80.9 100 50.0
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 8.6e-14 80.5 89 50.6
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 8.6e-14 80.5 76 55.3
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 8.6e-14 80.5 99 49.5
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 1.1e-13 80.1 95 51.6
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.5e-13 79.7 102 47.1
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 1.5e-13 79.7 100 50.0
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 1.9e-13 79.3 95 47.4
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 1.9e-13 79.3 97 47.4
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 1.9e-13 79.3 95 47.4
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 1.9e-13 79.3 101 50.5
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 1.9e-13 79.3 96 49.0
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 2.5e-13 79.0 82 54.9
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 2.5e-13 79.0 63 61.9
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.5e-13 79.0 101 50.5
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 2.5e-13 79.0 100 47.0
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 3.3e-13 78.6 72 56.9
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 3.3e-13 78.6 96 47.9
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 4.3e-13 78.2 89 52.8
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 4.3e-13 78.2 100 49.0
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 4.3e-13 78.2 101 46.5
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 5.6e-13 77.8 91 45.1
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 7.3e-13 77.4 100 49.0
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 7.3e-13 77.4 88 48.9
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 9.5e-13 77.0 88 47.7
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 9.5e-13 77.0 101 46.5
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 9.5e-13 77.0 78 55.1
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 1.2e-12 76.6 104 47.1
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.2e-12 76.6 105 43.8
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 1.6e-12 76.3 103 45.6
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.6e-12 76.3 62 61.3
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 2.1e-12 75.9 74 55.4
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 2.8e-12 75.5 70 51.4
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 4.7e-12 74.7 103 47.6
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 4.7e-12 74.7 105 43.8
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 4.7e-12 74.7 96 46.9
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 6.2e-12 74.3 88 48.9
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 8.1e-12 73.9 88 53.4
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.1e-11 73.6 65 55.4
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 1.8e-11 72.8 89 48.3
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 1.8e-11 72.8 78 42.3
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 2.3e-11 72.4 56 60.7
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 2.3e-11 72.4 48 72.9
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 2.3e-11 72.4 103 44.7
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 2.3e-11 72.4 103 49.5
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 2.3e-11 72.4 88 45.5
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 3.1e-11 72.0 93 47.3
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 3.1e-11 72.0 104 46.2
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 3.1e-11 72.0 88 46.6
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 3.1e-11 72.0 88 46.6
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 4.0e-11 71.6 105 43.8
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 4.0e-11 71.6 62 58.1
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 5.2e-11 71.2 99 45.5
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 6.8e-11 70.9 74 52.7
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 8.9e-11 70.5 90 48.9
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 1.2e-10 70.1 62 56.5
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 1.2e-10 70.1 88 50.0
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 1.5e-10 69.7 97 44.3
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.5e-10 69.7 58 60.3
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 1.5e-10 69.7 97 43.3
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.5e-10 69.7 69 49.3
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.6e-10 68.9 97 45.4
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 2.6e-10 68.9 106 45.3
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 3.4e-10 68.6 44 72.7
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 3.4e-10 68.6 97 45.4
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 3.4e-10 68.6 94 41.5
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 3.4e-10 68.6 111 43.2
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 4.4e-10 68.2 95 43.2
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 4.4e-10 68.2 83 48.2
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 4.4e-10 68.2 57 57.9
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 4.4e-10 68.2 106 43.4
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 5.8e-10 67.8 101 44.6
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 7.6e-10 67.4 97 43.3
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 9.9e-10 67.0 92 45.7
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 9.9e-10 67.0 95 42.1
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 1.3e-09 66.6 74 52.7
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.7e-09 66.2 97 43.3
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.7e-09 66.2 97 40.2
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 1.7e-09 66.2 60 56.7
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 2.9e-09 65.5 97 43.3
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.9e-09 65.5 95 44.2
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 3.8e-09 65.1 73 49.3
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 3.8e-09 65.1 40 77.5
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 8.4e-09 63.9 103 39.8
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.4e-08 63.2 40 75.0
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.4e-08 63.2 40 75.0
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.4e-08 63.2 40 75.0
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 1.4e-08 63.2 74 50.0
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 3.2e-08 62.0 79 46.8
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 5.4e-08 61.2 97 40.2
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 9.2e-08 60.5 64 46.9
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.1e-07 59.3 73 46.6
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 3.5e-07 58.5 96 38.5
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 4.6e-07 58.2 62 41.9
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 7.8e-07 57.4 70 41.4
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.0e-06 57.0 69 43.5
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.3e-06 56.6 83 39.8
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.7e-06 56.2 71 43.7
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.7e-06 56.2 67 49.3
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 2.3e-06 55.8 75 42.7
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 2.3e-06 55.8 62 46.8
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 3.0e-06 55.5 83 37.3
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.0e-06 55.5 70 42.9
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 3.0e-06 55.5 97 40.2
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 3.0e-06 55.5 55 52.7
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 3.9e-06 55.1 71 43.7
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 3.9e-06 55.1 100 39.0
SalBow6G5095 Salvia bowleyana HOM05D004289 ORTHO05D005141 3.9e-06 55.1 98 40.8
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 3.9e-06 55.1 82 43.9
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 5.1e-06 54.7 62 50.0
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 6.6e-06 54.3 70 41.4
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 6.6e-06 54.3 75 44.0
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 6.6e-06 54.3 34 67.6


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