Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.1e-63 246.5 129 100.0
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 1.6e-49 199.5 112 88.4
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 3.8e-48 194.9 110 88.2
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 8.5e-48 193.7 115 85.2
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.5e-47 193.0 110 87.3
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 2.3e-45 185.7 115 80.9
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 3.0e-45 185.3 115 80.9
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 3.0e-45 185.3 115 80.9
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.0e-45 184.9 115 82.6
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.0e-45 184.9 115 82.6
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 6.7e-45 184.1 104 87.5
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 6.7e-45 184.1 114 80.7
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 8.8e-45 183.7 124 78.2
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 2.0e-44 182.6 115 81.7
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 2.6e-44 182.2 115 83.5
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 4.4e-44 181.4 115 80.9
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 4.4e-44 181.4 115 81.7
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 9.7e-44 180.3 117 81.2
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.3e-43 179.9 115 82.6
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 2.2e-43 179.1 115 82.6
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 2.8e-43 178.7 115 82.6
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 4.8e-43 177.9 115 80.9
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 8.2e-43 177.2 115 80.9
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.1e-42 176.8 117 81.2
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 1.1e-42 176.8 115 78.3
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 1.8e-42 176.0 115 81.7
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 2.4e-42 175.6 115 79.1
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.1e-42 174.9 117 81.2
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.1e-42 174.9 117 81.2
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 4.1e-42 174.9 115 80.0
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 7.0e-42 174.1 115 78.3
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 7.0e-42 174.1 115 78.3
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 9.1e-42 173.7 115 80.0
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.2e-41 173.3 115 79.1
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 1.6e-41 172.9 115 78.3
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 2.0e-41 172.6 105 83.8
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 2.0e-41 172.6 115 77.4
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 2.7e-41 172.2 114 77.2
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 4.5e-41 171.4 115 76.5
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 4.5e-41 171.4 115 77.4
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 5.9e-41 171.0 110 80.0
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.0e-40 170.2 114 78.1
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.7e-40 169.5 114 75.4
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 2.2e-40 169.1 118 77.1
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 2.2e-40 169.1 110 79.1
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 2.9e-40 168.7 115 75.7
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 3.8e-40 168.3 115 76.5
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 3.8e-40 168.3 115 76.5
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 3.8e-40 168.3 115 78.3
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 3.8e-40 168.3 115 78.3
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 3.8e-40 168.3 115 74.8
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 5.0e-40 167.9 119 75.6
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 6.5e-40 167.5 116 75.0
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 8.5e-40 167.2 115 76.5
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 8.5e-40 167.2 113 76.1
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.1e-39 166.8 121 73.6
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.1e-39 166.8 115 75.7
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.1e-39 166.8 115 78.3
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 1.5e-39 166.4 112 75.9
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.9e-39 166.0 110 78.2
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 2.5e-39 165.6 111 76.6
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 3.2e-39 165.2 111 74.8
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 3.2e-39 165.2 115 77.4
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 3.2e-39 165.2 100 83.0
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 5.5e-39 164.5 111 75.7
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 5.5e-39 164.5 110 77.3
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 5.5e-39 164.5 115 75.7
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 7.2e-39 164.1 120 74.2
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 9.4e-39 163.7 115 73.0
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 9.4e-39 163.7 111 73.9
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 9.4e-39 163.7 109 75.2
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 1.2e-38 163.3 113 74.3
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 1.2e-38 163.3 121 71.9
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 1.6e-38 162.9 111 74.8
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.7e-38 162.2 130 69.2
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 3.6e-38 161.8 114 72.8
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 3.6e-38 161.8 110 75.5
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 3.6e-38 161.8 118 73.7
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 3.6e-38 161.8 114 74.6
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 4.7e-38 161.4 113 74.3
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 4.7e-38 161.4 108 76.9
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 6.1e-38 161.0 112 73.2
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 6.1e-38 161.0 112 73.2
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 8.0e-38 160.6 111 73.9
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 1.8e-37 159.5 123 67.5
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.8e-37 159.5 117 71.8
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.8e-37 159.5 110 74.5
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.3e-37 159.1 105 78.1
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 2.3e-37 159.1 111 73.0
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 4.0e-37 158.3 111 73.9
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.2e-37 157.9 100 80.0
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 5.2e-37 157.9 111 72.1
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 6.8e-37 157.5 108 74.1
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 1.2e-36 156.8 99 79.8
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.2e-36 156.8 99 79.8
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.2e-36 156.8 99 79.8
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.2e-36 156.8 99 79.8
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.2e-36 156.8 96 80.2
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.5e-36 156.4 115 73.0
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 2.6e-36 155.6 114 71.1
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 2.6e-36 155.6 114 71.1
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 2.6e-36 155.6 111 69.4
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 4.4e-36 154.8 99 78.8
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 5.7e-36 154.5 107 73.8
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 9.8e-36 153.7 98 79.6
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 9.8e-36 153.7 106 73.6
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.3e-35 153.3 109 72.5
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 2.2e-35 152.5 116 67.2
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 2.8e-35 152.1 101 78.2
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 3.7e-35 151.8 100 78.0
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 3.1e-34 148.7 97 79.4
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 9.1e-34 147.1 101 74.3
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 2.3e-32 142.5 110 66.4
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 6.5e-32 141.0 110 66.4
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 4.2e-31 138.3 110 65.5
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 5.5e-31 137.9 101 75.2
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 7.2e-31 137.5 108 63.0
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 1.2e-30 136.7 110 66.4
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 1.2e-30 136.7 108 63.0
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.8e-29 132.9 85 78.8
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 2.3e-29 132.5 92 72.8
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 4.9e-27 124.8 100 65.0
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 4.1e-26 121.7 69 84.1
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 7.0e-26 120.9 68 83.8
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.0e-24 117.1 84 71.4
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 2.9e-24 115.5 83 71.1
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 8.6e-24 114.0 77 74.0
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 8.6e-24 114.0 77 74.0
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 1.8e-21 106.3 56 92.9
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 3.0e-21 105.5 71 76.1
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 8.9e-21 104.0 102 53.9
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 8.9e-21 104.0 79 68.4
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 2.0e-20 102.8 125 46.4
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 9.8e-20 100.5 97 53.6
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 3.7e-19 98.6 72 72.2
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.1e-18 97.1 63 71.4
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 3.3e-15 85.5 74 64.9
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 9.5e-15 84.0 116 50.0
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-14 83.6 75 62.7
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 2.3e-13 79.3 85 56.5
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 2.3e-13 79.3 53 71.7
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 1.5e-12 76.6 67 55.2
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 1.5e-12 76.6 102 45.1
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.0e-12 76.3 72 59.7
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 2.6e-12 75.9 56 67.9
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.1e-10 70.5 84 52.4
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 1.9e-10 69.7 48 72.9
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 2.4e-10 69.3 64 64.1
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 7.0e-10 67.8 56 66.1
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 9.2e-10 67.4 114 38.6
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 4.6e-09 65.1 113 36.3
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 4.6e-09 65.1 59 54.2
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 1.7e-08 63.2 52 65.4
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.1e-07 60.5 44 70.5
SGA_v2.0_scaffold13G06711 Striga asiatica HOM05D001997 ORTHO05D005560 2.1e-06 56.2 38 68.4
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 2.8e-06 55.8 74 48.6


User provided reference genes

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