Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 2.8e-58 228.4 115 100.0
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.2e-21 106.7 56 92.9
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 2.1e-21 105.9 56 91.1
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 4.6e-21 104.8 56 89.3
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 6.1e-21 104.4 56 87.5
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 7.9e-21 104.0 56 89.3
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.0e-20 103.6 56 87.5
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.0e-20 103.6 56 87.5
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 2.3e-20 102.4 56 87.5
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 8.7e-20 100.5 77 67.5
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.9e-19 99.4 56 85.7
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 2.5e-19 99.0 56 85.7
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.5e-19 99.0 56 85.7
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.5e-19 99.0 56 85.7
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 3.3e-19 98.6 56 85.7
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 4.3e-19 98.2 56 83.9
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 5.7e-19 97.8 56 83.9
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 5.7e-19 97.8 56 83.9
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 3.7e-18 95.1 56 83.9
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 4.8e-18 94.7 56 78.6
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 8.2e-18 94.0 56 83.9
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.1e-17 93.6 56 82.1
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.8e-17 92.8 56 80.4
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 1.8e-17 92.8 56 82.1
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 1.8e-17 92.8 56 82.1
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 1.8e-17 92.8 56 80.4
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.8e-17 92.8 56 80.4
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 2.4e-17 92.4 56 82.1
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 3.1e-17 92.0 56 82.1
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 3.1e-17 92.0 56 78.6
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 3.1e-17 92.0 56 75.0
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.1e-17 92.0 56 82.1
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.1e-17 91.7 56 80.4
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 4.1e-17 91.7 56 80.4
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 4.1e-17 91.7 56 80.4
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 4.1e-17 91.7 56 82.1
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 5.3e-17 91.3 56 80.4
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 5.3e-17 91.3 53 83.0
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 6.9e-17 90.9 56 80.4
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 9.0e-17 90.5 56 80.4
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 9.0e-17 90.5 53 81.1
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 9.0e-17 90.5 53 81.1
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 9.0e-17 90.5 68 70.6
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.2e-16 90.1 56 80.4
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.5e-16 89.7 56 78.6
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.5e-16 89.7 56 76.8
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 2.0e-16 89.4 56 78.6
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 2.0e-16 89.4 60 71.7
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 2.0e-16 89.4 56 78.6
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 2.6e-16 89.0 56 76.8
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 2.6e-16 89.0 56 78.6
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 3.4e-16 88.6 55 81.8
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 4.5e-16 88.2 53 79.2
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.5e-16 88.2 53 79.2
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.5e-16 88.2 53 79.2
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.5e-16 88.2 53 79.2
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.5e-16 88.2 53 79.2
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 4.5e-16 88.2 56 76.8
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 4.5e-16 88.2 56 76.8
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 4.5e-16 88.2 56 80.4
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 5.9e-16 87.8 55 80.0
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 5.9e-16 87.8 55 80.0
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 7.7e-16 87.4 56 75.0
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 7.7e-16 87.4 56 75.0
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 7.7e-16 87.4 56 75.0
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 7.7e-16 87.4 56 75.0
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 7.7e-16 87.4 56 75.0
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 7.7e-16 87.4 56 75.0
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 7.7e-16 87.4 56 75.0
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 7.7e-16 87.4 58 74.1
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 7.7e-16 87.4 56 75.0
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.0e-15 87.0 56 75.0
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.0e-15 87.0 56 75.0
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 1.0e-15 87.0 56 75.0
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.0e-15 87.0 53 79.2
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.0e-15 87.0 53 79.2
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 1.0e-15 87.0 56 75.0
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 1.3e-15 86.7 56 73.2
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 1.3e-15 86.7 56 75.0
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 1.3e-15 86.7 56 76.8
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 1.3e-15 86.7 56 76.8
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.7e-15 86.3 56 78.6
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 1.7e-15 86.3 56 73.2
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.7e-15 86.3 56 73.2
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.7e-15 86.3 56 73.2
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 1.7e-15 86.3 56 73.2
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.7e-15 86.3 56 73.2
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 1.7e-15 86.3 56 75.0
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 1.7e-15 86.3 56 75.0
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.7e-15 86.3 53 77.4
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 2.2e-15 85.9 56 71.4
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 2.2e-15 85.9 56 73.2
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 2.2e-15 85.9 56 73.2
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 3.8e-15 85.1 55 76.4
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 3.8e-15 85.1 56 73.2
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 3.8e-15 85.1 56 75.0
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 5.0e-15 84.7 56 75.0
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 5.0e-15 84.7 56 71.4
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 5.0e-15 84.7 55 78.2
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 6.5e-15 84.3 56 73.2
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 8.5e-15 84.0 56 76.8
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 8.5e-15 84.0 55 76.4
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 8.5e-15 84.0 55 76.4
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 8.5e-15 84.0 56 73.2
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 1.1e-14 83.6 55 76.4
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.1e-14 83.6 56 71.4
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.4e-14 83.2 56 76.8
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.4e-14 83.2 56 69.6
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 1.4e-14 83.2 56 69.6
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.5e-14 82.4 75 62.7
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 4.2e-14 81.6 56 71.4
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 7.2e-14 80.9 56 69.6
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 7.2e-14 80.9 56 69.6
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 9.4e-14 80.5 56 69.6
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 3.6e-13 78.6 56 73.2
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 1.0e-12 77.0 62 66.1
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 3.9e-12 75.1 56 62.5
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 8.8e-12 73.9 48 77.1
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.1e-11 73.6 45 77.8
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 3.3e-11 72.0 56 64.3
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 4.3e-11 71.6 46 76.1
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 4.3e-11 71.6 56 62.5
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 7.4e-11 70.9 56 64.3
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 2.8e-10 68.9 50 66.0
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 2.8e-10 68.9 48 72.9
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 2.8e-10 68.9 55 56.4
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 3.7e-10 68.6 48 70.8
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 3.7e-10 68.6 56 60.7
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 6.3e-10 67.8 61 62.3
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 6.3e-10 67.8 48 66.7
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 3.1e-09 65.5 42 73.8
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 6.9e-09 64.3 61 60.7
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 1.5e-08 63.2 71 54.9
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.4e-08 62.0 56 58.9
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.0e-07 60.5 56 55.4
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 2.2e-07 59.3 53 54.7
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 8.5e-07 57.4 40 70.0
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 5.5e-06 54.7 60 46.7


User provided reference genes

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