Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 0.0e+00 1148.7 583 100.0
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 3.9e-273 944.5 582 79.7
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 1.0e-270 936.4 574 80.3
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 7.0e-267 923.7 581 78.7
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 1.7e-265 919.1 562 80.1
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 1.7e-265 919.1 577 78.5
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 3.9e-265 917.9 577 78.7
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 1.5e-264 916.0 577 78.2
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 5.6e-264 914.1 576 77.6
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 6.2e-263 910.6 566 79.3
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 4.0e-262 907.9 583 77.0
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 4.9e-260 901.0 576 77.4
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 4.1e-259 897.9 563 78.7
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 4.6e-258 894.4 564 77.1
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 1.0e-257 893.3 564 78.5
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 3.0e-257 891.7 564 79.1
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 6.6e-257 890.6 565 78.8
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.8e-255 885.2 565 78.1
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.8e-255 885.2 565 78.1
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 4.7e-255 884.4 563 78.2
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 4.7e-255 884.4 568 75.7
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.1e-254 883.2 564 77.8
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 1.1e-254 883.2 563 77.3
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 1.2e-253 879.8 565 77.7
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 1.5e-253 879.4 571 77.1
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 1.5e-253 879.4 563 76.6
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 1.1e-251 873.2 561 76.5
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 9.2e-251 870.2 570 76.0
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 1.2e-250 869.8 567 75.3
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.6e-250 869.4 564 77.1
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 1.9e-248 862.4 566 75.6
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 1.9e-248 862.4 571 76.0
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 5.6e-248 860.9 561 75.6
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 1.5e-245 852.8 570 73.7
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 1.5e-245 852.8 563 75.8
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 4.4e-245 851.3 564 74.3
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 7.1e-243 844.0 560 74.1
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 9.3e-243 843.6 560 74.3
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 9.3e-243 843.6 560 74.3
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 1.2e-242 843.2 567 72.1
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 2.1e-242 842.4 564 73.9
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 2.7e-242 842.0 567 72.5
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 7.8e-242 840.5 566 74.4
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 1.0e-241 840.1 562 75.6
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 1.7e-241 839.3 561 73.1
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 2.3e-241 839.0 562 73.1
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 6.6e-241 837.4 562 75.3
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 1.9e-240 835.9 561 73.1
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 4.3e-240 834.7 568 73.1
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 2.1e-239 832.4 572 72.9
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 2.8e-239 832.0 602 71.3
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 6.9e-238 827.4 563 73.7
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 1.5e-237 826.2 584 70.0
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 2.6e-237 825.5 563 72.5
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 2.9e-236 822.0 553 75.0
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 1.4e-235 819.7 587 70.0
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 1.4e-235 819.7 569 73.1
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 5.4e-235 817.8 563 72.1
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 9.3e-235 817.0 563 72.1
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 2.1e-234 815.8 577 71.9
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 2.7e-234 815.5 573 70.3
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 6.0e-234 814.3 563 71.0
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 1.0e-233 813.5 563 70.9
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 3.0e-233 812.0 564 73.6
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 5.1e-233 811.2 607 68.2
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 1.1e-232 810.1 564 71.3
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 2.8e-231 805.4 599 67.8
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 3.6e-231 805.1 563 72.5
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 9.9e-229 797.0 618 65.5
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 2.9e-228 795.4 563 70.0
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 4.9e-228 794.7 570 69.8
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 1.1e-227 793.5 572 68.0
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 1.1e-227 793.5 561 70.1
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 1.0e-225 786.9 564 69.7
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 1.0e-225 786.9 562 69.6
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 1.3e-225 786.6 563 69.6
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 3.9e-225 785.0 563 69.6
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 1.5e-224 783.1 577 67.2
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 1.4e-214 750.0 491 75.8
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 6.1e-210 734.6 563 66.8
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 8.7e-209 730.7 460 77.4
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 2.5e-203 712.6 571 64.1
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 2.0e-200 703.0 637 58.6
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 7.4e-200 701.0 565 63.4
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 2.9e-196 689.1 457 74.8
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 1.8e-193 679.9 432 78.7
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 8.2e-191 671.0 401 80.8
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 3.5e-181 639.0 624 55.1
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 1.3e-180 637.1 415 73.7
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 2.9e-180 636.0 404 77.7
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 3.2e-179 632.5 420 74.0
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.0e-177 627.5 614 54.1
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.0e-177 627.5 614 54.1
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 3.2e-171 605.9 413 72.6
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.0e-165 586.6 410 70.5
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.7e-159 567.0 416 67.3
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 5.4e-158 562.0 577 54.6
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 2.0e-157 560.1 396 70.7
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 6.6e-148 528.5 548 52.2
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 2.6e-144 516.5 308 79.9
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 3.3e-139 499.6 302 82.5
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.2e-133 481.1 557 49.2
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 2.9e-119 433.3 313 67.1
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 9.9e-112 408.3 658 37.8
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 2.1e-109 400.6 240 82.5
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.1e-89 335.1 197 83.8
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 5.7e-75 286.2 536 36.2
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 7.4e-75 285.8 170 82.9
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.5e-67 261.5 413 38.7
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.2e-59 235.3 150 78.0
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 3.2e-54 217.2 132 75.8
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 6.1e-53 213.0 132 76.5
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 2.8e-50 204.1 122 78.7
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 3.0e-44 184.1 102 84.3
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 9.2e-41 172.6 106 81.1
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 4.6e-40 170.2 153 59.5
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 4.1e-33 147.1 147 54.4
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 4.9e-26 123.6 66 84.8
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 7.8e-16 89.7 54 74.1
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 1.8e-12 78.6 442 24.4
Migut.D00299 Erythranthe guttata HOM05D002203 ORTHO05D002647 8.7e-07 59.7 261 25.7
Cre03.g144284 Chlamydomonas reinhardtii HOM05D000563 ORTHO05D000536 5.6e-06 57.0 172 26.2
CBR_g46594 Chara braunii HOM05D002203 ORTHO05D002647 7.3e-06 56.6 250 22.4
Solyc06g084250.4 Solanum lycopersicum HOM05D002203 ORTHO05D002647 7.3e-06 56.6 295 22.7
Zm00001eb418740 Zea mays HOM05D000563 ORTHO05D442000 9.6e-06 56.2 100 30.0


User provided reference genes

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