Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g08780 Coffea canephora HOM05D006459 ORTHO05D008414 7.8e-208 726.9 362 100.0
Dinv09391 Davidia involucrata HOM05D006459 ORTHO05D008414 7.9e-160 567.4 357 80.1
Migut.C01370 Erythranthe guttata HOM05D006459 ORTHO05D008414 2.3e-159 565.8 357 79.8
Actinidia29387 Actinidia chinensis HOM05D006459 ORTHO05D008414 2.2e-157 559.3 357 78.7
MSTRG.1592 Avicennia marina HOM05D006459 ORTHO05D008414 6.3e-157 557.8 343 79.9
GSVIVG01036383001 Vitis vinifera HOM05D006459 ORTHO05D008414 6.3e-157 557.8 350 78.9
CSS0029003 Camellia sinensis var. sinensis HOM05D006459 ORTHO05D008414 8.2e-157 557.4 318 83.0
CAN.G924.3 Capsicum annuum HOM05D006459 ORTHO05D008414 2.4e-156 555.8 332 81.3
CsaV3_5G040000 Cucumis sativus L. HOM05D006459 ORTHO05D008414 4.1e-156 555.1 316 82.6
Sopen11g018500 Solanum pennellii HOM05D006459 ORTHO05D008414 9.1e-156 553.9 327 81.3
Solyc11g042430.2 Solanum lycopersicum HOM05D006459 ORTHO05D008414 1.2e-155 553.5 338 79.9
Thecc.08G176900 Theobroma cacao HOM05D006459 ORTHO05D008414 3.5e-155 552.0 350 77.7
TAR628G1703 Trochodendron aralioides HOM05D006459 ORTHO05D008414 5.9e-155 551.2 341 78.9
Atru.chr13.2479 Acer truncatum HOM05D006459 ORTHO05D008414 1.0e-154 550.4 352 76.7
HanXRQChr14g0455131 Helianthus annuus HOM05D006459 ORTHO05D008414 2.2e-154 549.3 352 76.7
Eucgr.F02979 Eucalyptus grandis HOM05D006459 ORTHO05D008414 2.9e-154 548.9 322 81.4
Manes.18G118600 Manihot esculenta HOM05D006459 ORTHO05D008414 6.5e-154 547.7 358 76.3
Gorai.009G266900 Gossypium raimondii HOM05D006459 ORTHO05D008414 8.5e-154 547.4 341 79.2
ECA234G2100 Erigeron canadensis HOM05D006459 ORTHO05D008414 1.9e-153 546.2 343 78.1
Sed0024118 Sechium edule HOM05D006459 ORTHO05D008414 3.2e-153 545.4 331 78.2
Gohir.D05G255500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 5.5e-153 544.7 341 78.9
Lsat_1_v5_gn_4_65220 Lactuca sativa HOM05D006459 ORTHO05D008414 5.5e-153 544.7 357 74.8
Gohir.A05G253500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 9.4e-153 543.9 341 78.9
Ciclev10020855m.g Citrus clementina HOM05D006459 ORTHO05D008414 1.2e-152 543.5 357 75.4
Aqoxy5G00842 Aquilegia oxysepala HOM05D006459 ORTHO05D008414 1.6e-152 543.1 321 81.0
CiPaw.03G015900 Carya illinoinensis HOM05D006459 ORTHO05D008414 3.6e-152 542.0 351 74.9
ClCG08G001020 Citrullus lanatus HOM05D006459 ORTHO05D008414 4.7e-152 541.6 323 80.2
Potri.019G072900 Populus trichocarpa HOM05D006459 ORTHO05D008414 4.7e-152 541.6 353 75.4
VMungo1215G2765 Vigna mungo HOM05D006459 ORTHO05D008414 8.0e-152 540.8 316 80.1
MD08G1213000 Malus domestica HOM05D006459 ORTHO05D008414 1.4e-151 540.0 351 75.8
Cpa.g.sc21.78 Carica papaya HOM05D006459 ORTHO05D008414 1.8e-151 539.7 346 77.2
Glyma.11G014000 Glycine max HOM05D006459 ORTHO05D008414 3.0e-151 538.9 316 80.7
Sabra19G0084300 Salix brachista HOM05D006459 ORTHO05D008414 3.0e-151 538.9 313 80.2
CANSAT54G1068 Cannabis sativa HOM05D006459 ORTHO05D008414 6.7e-151 537.7 317 81.4
Prupe.1G544300 Prunus persica HOM05D006459 ORTHO05D008414 6.7e-151 537.7 316 80.7
CiPaw.03G015700 Carya illinoinensis HOM05D006459 ORTHO05D008414 8.8e-151 537.3 351 74.6
FvH4_5g33360 Fragaria vesca HOM05D006459 ORTHO05D008414 2.6e-150 535.8 357 75.6
THA.LOC104815846 Tarenaya hassleriana HOM05D006459 ORTHO05D008414 3.3e-150 535.4 356 72.5
BcaB01g02766 Brassica carinata HOM05D006459 ORTHO05D008414 4.4e-150 535.0 337 76.3
MBI03_g28420_MAGBIO Magnolia biondii HOM05D006459 ORTHO05D008414 4.4e-150 535.0 331 77.9
Ca_24473_v3 Cicer arietinum L. HOM05D006459 ORTHO05D008414 5.7e-150 534.6 337 75.1
Phvul.002G036200 Phaseolus vulgaris HOM05D006459 ORTHO05D008414 5.7e-150 534.6 333 77.2
TWI75G0925 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 7.5e-150 534.3 356 73.9
Haze_13948 Corylus avellana HOM05D006459 ORTHO05D008414 1.3e-149 533.5 329 77.5
BcaC01g04692 Brassica carinata HOM05D006459 ORTHO05D008414 2.2e-149 532.7 337 75.7
BolC3t15799H Brassica oleracea HOM05D006459 ORTHO05D008414 2.2e-149 532.7 337 75.7
EL10Ac1g01666 Beta vulgaris HOM05D006459 ORTHO05D008414 2.8e-149 532.3 318 79.6
COL.COLO4_24570 Corchorus olitorius HOM05D006459 ORTHO05D008414 2.8e-149 532.3 340 77.6
Oeu023200.3 Olea europaea HOM05D006459 ORTHO05D008414 3.7e-149 531.9 303 84.5
Potri.013G099900 Populus trichocarpa HOM05D006459 ORTHO05D008414 1.4e-148 530.0 350 73.7
BraA03t12083Z Brassica rapa HOM05D006459 ORTHO05D008414 2.4e-148 529.3 337 75.1
Lalb_Chr09g0320511 Lupinus albus HOM05D006459 ORTHO05D008414 2.4e-148 529.3 331 75.5
QL09p002119 Quercus lobata HOM05D006459 ORTHO05D008414 2.4e-148 529.3 316 79.4
RcHm_v2.0_Chr7g0232091 Rosa chinensis HOM05D006459 ORTHO05D008414 2.4e-148 529.3 354 74.6
Cfa008090 Carpinus fangiana HOM05D006459 ORTHO05D008414 4.1e-148 528.5 321 78.5
Medtr5g008450 Medicago truncatula HOM05D006459 ORTHO05D008414 4.1e-148 528.5 326 75.2
Psat2g187200 Pisum sativum HOM05D006459 ORTHO05D008414 4.1e-148 528.5 326 75.5
SalBow7G1102 Salvia bowleyana HOM05D006459 ORTHO05D008414 4.1e-148 528.5 354 74.3
Sp6g07420 Schrenkiella parvula HOM05D006459 ORTHO05D008414 4.1e-148 528.5 339 74.6
A03p28850 Brassica napus HOM05D006459 ORTHO05D008414 9.1e-148 527.3 337 75.1
C03p34880 Brassica napus HOM05D006459 ORTHO05D008414 1.2e-147 526.9 337 74.8
arahy.Tifrunner.gnm1.ann1.LVU4B6 Arachis hypogaea HOM05D006459 ORTHO05D008414 2.0e-147 526.2 346 72.8
MELO3C022178.2 Cucumis melo HOM05D006459 ORTHO05D008414 2.0e-147 526.2 315 80.0
AL6G43830 Arabidopsis lyrata HOM05D006459 ORTHO05D008414 1.7e-146 523.1 315 77.8
Thhalv10028776m.g Eutrema salsugineum HOM05D006459 ORTHO05D008414 2.9e-146 522.3 339 74.0
LjContig00222g0004888 Lotus japonicus HOM05D006459 ORTHO05D008414 2.9e-146 522.3 316 76.9
Carub.0006s2860 Capsella rubella HOM05D006459 ORTHO05D008414 6.5e-146 521.2 350 72.6
Aa31LG9G11940 Aethionema arabicum HOM05D006459 ORTHO05D008414 1.1e-145 520.4 337 74.5
Peaxi162Scf00078g00423 Petunia axillaris HOM05D006459 ORTHO05D008414 1.1e-145 520.4 314 79.9
AT4G10050 Arabidopsis thaliana HOM05D006459 ORTHO05D008414 1.5e-145 520.0 356 71.3
PGR042G0716 Punica granatum HOM05D006459 ORTHO05D008414 4.2e-145 518.5 330 74.2
PSO170G3138 Papaver somniferum HOM05D006459 ORTHO05D008414 2.1e-144 516.2 354 69.8
unitig_8.g4894 Utricularia gibba HOM05D006459 ORTHO05D008414 2.7e-144 515.8 345 72.5
HPP92_005641 Vanilla planifolia HOM05D006459 ORTHO05D008414 2.7e-144 515.8 312 77.2
PSO017G7078 Papaver somniferum HOM05D006459 ORTHO05D008414 1.0e-143 513.8 317 75.4
TPR.G37896 Trifolium pratense HOM05D006459 ORTHO05D008414 8.8e-143 510.8 303 76.9
Os04g0443500 Oryza sativa ssp. japonica HOM05D006459 ORTHO05D008414 2.8e-141 505.8 320 75.9
FAN04G1764 Fragaria x ananassa HOM05D006459 ORTHO05D008414 5.4e-140 501.5 386 68.4
Nitab4.5_0000903g0050 Nicotiana tabacum HOM05D006459 ORTHO05D008414 7.7e-139 497.7 328 74.1
Zm00001eb082080 Zea mays HOM05D006459 ORTHO05D008414 4.2e-137 491.9 355 68.5
ATR1089G027 Amborella trichopoda HOM05D006459 ORTHO05D008414 6.1e-136 488.0 355 68.7
MD15G1395500 Malus domestica HOM05D006459 ORTHO05D008414 6.1e-136 488.0 351 71.2
Pp3c6_4660 Physcomitrium patens HOM05D006459 ORTHO05D008414 1.1e-132 477.2 354 66.7
AagrBONN_evm.TU.Sc2ySwM_117.506 Anthoceros agrestis HOM05D006459 ORTHO05D008414 1.6e-128 463.4 320 66.6
TWI12G1446 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 2.3e-127 459.5 263 84.0
Mapoly0007s0278 Marchantia polymorpha HOM05D006459 ORTHO05D008414 3.4e-126 455.7 314 66.9
Nitab4.5_0000999g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 5.9e-123 444.9 328 68.6
SMO356G0681 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 4.7e-120 435.3 306 67.6
AUR62034346 Chenopodium quinoa HOM05D006459 ORTHO05D008414 3.1e-119 432.6 251 83.7
Lj9A698G57 Lonicera japonica HOM05D006459 ORTHO05D008414 1.5e-118 430.3 330 68.2
arahy.Tifrunner.gnm1.ann1.K3NID2 Arachis hypogaea HOM05D006459 ORTHO05D008414 3.0e-114 416.0 373 59.8
SGA_v2.0_scaffold118G32601 Striga asiatica HOM05D006459 ORTHO05D008414 3.9e-114 415.6 346 64.7
Nitab4.5_0003013g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 4.3e-113 412.1 328 64.0
DCAR_017359 Daucus carota HOM05D006459 ORTHO05D008414 7.3e-113 411.4 229 86.5
Rhsim02G0145500 Rhododendron simsii HOM05D006459 ORTHO05D008414 2.8e-112 409.5 539 48.2
Duzib268G1319 Durio zibethinus HOM05D006459 ORTHO05D008414 4.0e-111 405.6 356 61.5
Sc25g0003010 Simmondsia chinensis HOM05D006459 ORTHO05D008414 1.2e-104 384.0 222 82.9
Nn5g27277 Nelumbo nucifera HOM05D006459 ORTHO05D008414 1.3e-101 374.0 262 72.9
Hma1.2p1_0074F.1_g039070 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 2.6e-86 323.2 186 83.9
SHI16717 Sapria himalayana HOM05D006459 ORTHO05D008414 6.4e-85 318.5 347 52.7
Hma1.2p1_0074F.1_g039080 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 3.5e-75 286.2 159 84.3
vmacro16046 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 3.5e-75 286.2 177 80.8
Cre12.g521250 Chlamydomonas reinhardtii HOM05D006459 ORTHO05D008414 5.6e-73 278.9 363 41.6
CBR_g45928 Chara braunii HOM05D006459 ORTHO05D008414 8.2e-72 275.0 220 59.1
Haze_26337 Corylus avellana HOM05D006459 ORTHO05D008414 3.2e-68 263.1 330 44.8
HPP92_005619 Vanilla planifolia HOM05D006459 ORTHO05D008414 1.3e-56 224.6 126 79.4
Glyma.01G230800 Glycine max HOM05D006459 ORTHO05D008414 1.0e-53 214.9 127 81.1
MCO04G089 Micromonas commoda HOM05D006459 ORTHO05D008414 5.0e-53 212.6 326 40.5
PRCOL_00002994 Prasinoderma coloniale HOM05D006459 ORTHO05D008414 2.0e-49 200.7 345 36.2
SEGI_15073 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 5.3e-47 192.6 126 71.4
HPP92_005618 Vanilla planifolia HOM05D006459 ORTHO05D008414 1.8e-39 167.5 97 80.4
SMO272G0012 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 1.3e-37 161.4 98 72.4
vmacro16045 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 5.2e-34 149.4 84 85.7
CBR_g27970 Chara braunii HOM05D006459 ORTHO05D008414 1.6e-27 127.9 82 73.2
FAN08G1548 Fragaria x ananassa HOM05D006459 ORTHO05D008414 1.7e-21 107.8 57 82.5
SEGI_06082 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 8.9e-18 95.5 76 61.8
Nn179s44626 Nelumbo nucifera HOM05D006459 ORTHO05D008414 2.2e-16 90.9 56 80.4
SEGI_00088 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 7.3e-12 75.9 45 68.9
MELO3C033538.2 Cucumis melo HOM05D006459 ORTHO05D169875 6.8e-10 69.3 165 31.5
SEGI_14439 Sequoiadendron giganteum HOM05D006459 ORTHO05D385787 1.6e-06 58.2 46 50.0
Lsat_1_v5_gn_2_49420 Lactuca sativa HOM05D006459 ORTHO05D008414 2.7e-06 57.4 30 86.7


User provided reference genes

Program Settings