Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 0.0e+00 1098.6 557 100.0
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 1.1e-221 773.5 534 72.5
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 1.4e-216 756.5 528 71.0
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 2.3e-211 739.2 527 70.6
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 6.8e-211 737.6 541 68.4
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 4.4e-210 734.9 542 68.8
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 6.4e-209 731.1 531 69.3
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 1.4e-208 729.9 528 69.5
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 3.2e-208 728.8 539 68.5
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 4.1e-208 728.4 536 68.1
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 5.4e-208 728.0 535 68.2
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 9.2e-208 727.2 529 69.6
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 3.0e-206 722.2 554 66.2
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 1.9e-205 719.5 537 66.1
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 3.3e-205 718.8 530 68.3
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 7.3e-205 717.6 535 66.7
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 4.7e-204 714.9 533 66.8
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 1.4e-203 713.4 526 68.3
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 3.4e-202 708.8 530 67.5
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 4.4e-202 708.4 531 67.8
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 4.4e-202 708.4 545 66.2
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 9.9e-202 707.2 530 67.9
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 4.9e-201 704.9 526 65.8
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 8.4e-201 704.1 530 66.6
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 1.4e-200 703.4 526 65.6
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 1.4e-200 703.4 530 66.8
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 9.3e-200 700.7 528 65.7
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.6e-199 699.9 547 64.9
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 2.1e-199 699.5 533 66.4
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.1e-199 699.5 533 66.4
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 1.7e-198 696.4 532 67.3
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 5.1e-198 694.9 533 64.4
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 6.6e-198 694.5 539 65.3
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 6.6e-198 694.5 535 65.8
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 1.1e-197 693.7 528 66.9
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 4.3e-197 691.8 553 62.7
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 7.3e-197 691.0 531 65.3
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 4.8e-196 688.3 531 65.5
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 4.8e-196 688.3 526 64.8
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 9.0e-195 684.1 547 64.2
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 3.4e-194 682.2 526 64.6
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 3.8e-193 678.7 564 62.2
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 6.4e-193 677.9 546 64.3
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 3.2e-192 675.6 535 64.1
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 4.6e-191 671.8 532 64.3
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 4.6e-191 671.8 534 63.7
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 7.9e-191 671.0 554 62.3
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 7.9e-191 671.0 530 63.4
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 2.3e-190 669.5 531 62.9
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 1.5e-189 666.8 529 63.1
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 1.9e-189 666.4 530 63.8
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 1.6e-188 663.3 580 59.5
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 4.8e-188 661.8 539 62.9
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 6.2e-188 661.4 530 63.2
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 5.3e-187 658.3 536 62.1
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 5.3e-187 658.3 526 61.6
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.5e-186 656.8 526 63.9
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 1.5e-186 656.8 539 62.5
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 3.8e-185 652.1 533 61.4
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 6.4e-185 651.4 533 61.2
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 1.4e-184 650.2 530 63.2
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 4.2e-184 648.7 593 57.7
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 5.5e-184 648.3 533 61.5
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 1.2e-183 647.1 530 61.1
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 8.7e-182 641.0 538 60.6
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 1.1e-181 640.6 569 59.9
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 3.3e-181 639.0 535 61.3
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 3.3e-181 639.0 533 60.6
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.1e-179 634.0 533 60.4
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 5.3e-179 631.7 533 58.9
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 1.4e-176 623.6 532 60.9
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 1.9e-173 613.2 548 58.0
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 3.7e-172 609.0 586 55.1
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 1.4e-171 607.1 501 62.1
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 1.4e-171 607.1 535 57.9
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 3.1e-171 605.9 450 66.7
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 6.5e-169 598.2 563 56.3
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 4.2e-168 595.5 555 57.1
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.2e-167 594.0 506 59.9
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 4.6e-167 592.0 539 56.4
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 1.9e-165 586.6 539 55.7
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 9.0e-163 577.8 539 55.1
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 1.5e-162 577.0 434 66.6
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 3.4e-162 575.9 555 55.7
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 6.5e-161 571.6 537 54.7
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 5.5e-160 568.5 448 62.5
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 9.1e-155 551.2 404 67.6
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 9.1e-155 551.2 407 66.8
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 2.0e-154 550.1 539 53.4
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.1e-152 544.3 411 66.4
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 1.6e-151 540.4 531 54.2
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 5.9e-146 521.9 531 53.1
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 2.2e-137 493.4 567 50.3
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 6.1e-135 485.3 539 49.5
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 2.0e-130 470.3 541 46.8
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 2.6e-125 453.4 541 45.3
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 1.7e-113 414.1 353 59.2
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 6.6e-113 412.1 353 58.9
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 1.5e-109 401.0 499 47.9
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 4.6e-106 389.4 288 67.0
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 4.7e-103 379.4 554 40.3
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 9.2e-99 365.2 285 64.9
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 8.1e-95 352.1 599 37.1
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 9.2e-91 338.6 463 43.4
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 6.4e-84 315.8 291 57.4
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 2.4e-75 287.3 381 44.6
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 2.4e-75 287.3 571 32.7
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 6.7e-73 279.3 212 63.7
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 1.9e-72 277.7 566 32.9
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.3e-71 275.0 202 68.3
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 3.9e-57 226.9 162 71.0
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 7.4e-56 222.6 531 31.5
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 2.1e-50 204.5 129 76.7
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 6.1e-50 203.0 134 74.6
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.0e-49 202.2 159 64.2
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 2.5e-48 197.6 172 56.4
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 2.4e-38 164.5 138 59.4
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 1.7e-36 158.3 123 59.3
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.7e-36 158.3 113 70.8
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 6.3e-31 139.8 99 70.7
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 3.5e-29 134.0 85 76.5
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 1.6e-26 125.2 100 65.0
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.0e-25 122.5 462 26.6
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 3.8e-20 104.0 152 40.1
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 8.3e-15 86.3 72 62.5
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 3.1e-14 84.3 71 62.0
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 4.1e-14 84.0 73 57.5
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 1.6e-13 82.0 115 43.5
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 1.6e-13 82.0 115 43.5
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 8.6e-12 76.3 115 41.7
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 3.6e-10 70.9 124 37.9
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 3.6e-10 70.9 68 54.4
VMungo1080G0730 Vigna mungo HOM05D000311 ORTHO05D000183 8.8e-09 66.2 317 25.2
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 3.4e-08 64.3 72 45.8
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 5.7e-08 63.5 49 59.2
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 7.5e-08 63.2 270 25.9
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 3.1e-06 57.8 74 47.3
arahy.Tifrunner.gnm1.ann1.E660H8 Arachis hypogaea HOM05D005625 ORTHO05D007564 9.2e-06 56.2 33 75.8
arahy.Tifrunner.gnm1.ann1.KG76U8 Arachis hypogaea HOM05D005625 ORTHO05D007564 9.2e-06 56.2 33 75.8


User provided reference genes

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