Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1961.8 963 100.0
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1226.1 1007 63.1
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1223.0 1009 63.9
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1206.4 997 64.2
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1193.3 1001 62.0
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1187.6 980 63.6
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1182.9 989 62.6
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1181.0 989 62.5
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1174.5 989 62.1
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1169.5 985 62.1
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1169.1 983 63.5
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1163.7 980 62.7
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1162.9 967 64.0
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1162.5 1008 61.5
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1149.8 976 62.0
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1143.6 1014 60.3
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1140.2 962 61.7
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1138.3 976 62.2
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1136.7 968 61.4
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1135.2 966 61.6
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1132.1 971 62.5
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1131.7 976 62.0
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1127.5 988 61.0
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1126.7 1014 59.9
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1125.5 1012 59.5
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1122.8 996 60.3
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1122.5 976 60.6
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1120.5 1041 59.2
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1116.3 994 59.8
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1116.3 1006 59.1
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1113.6 975 60.7
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1112.8 959 61.7
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1112.4 951 61.3
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1112.1 949 61.2
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1111.7 1013 59.6
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1111.3 969 60.3
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1111.3 987 61.2
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1109.4 1011 59.0
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 968 61.3
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1108.2 982 60.4
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1104.0 969 60.3
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1102.4 962 60.3
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1102.0 1031 57.2
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1101.7 1006 59.2
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1096.3 996 58.7
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1096.3 956 61.0
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1091.6 975 60.5
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1090.9 946 61.5
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1087.8 975 59.4
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1087.8 965 60.7
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1081.6 988 59.1
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1081.6 964 60.1
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1081.6 969 60.9
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1080.9 972 59.2
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1080.1 973 59.6
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1078.9 981 59.3
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 0.0e+00 1076.2 992 59.3
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1075.5 1043 56.2
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 6.6e-312 1073.5 1057 55.2
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 6.6e-312 1073.5 864 65.4
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 7.9e-311 1070.5 958 59.5
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 3.8e-310 1068.1 971 58.3
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 5.0e-310 1067.8 979 57.4
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.4e-309 1066.2 1043 56.4
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.4e-309 1066.2 892 63.2
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 1.9e-309 1065.8 977 57.5
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.5e-309 1065.4 1043 56.4
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 5.5e-309 1064.3 1091 53.7
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 9.4e-309 1063.5 978 58.1
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 2.1e-308 1062.4 981 56.6
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 4.7e-308 1061.2 989 56.9
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 4.7e-308 1061.2 977 56.8
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 4.7e-308 1061.2 959 59.3
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 1.0e-307 1060.1 987 56.6
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 1.4e-307 1059.7 978 57.1
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 6.7e-307 1057.4 960 58.5
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 6.7e-307 1057.4 982 56.5
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 7.4e-306 1053.9 981 56.7
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 1.3e-305 1053.1 988 56.4
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.3e-305 1053.1 956 58.4
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 2.2e-305 1052.4 987 56.4
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 6.3e-305 1050.8 967 57.4
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 6.3e-305 1050.8 967 57.4
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 2.4e-304 1048.9 981 56.5
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 5.3e-304 1047.7 991 55.9
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 9.1e-304 1047.0 984 58.1
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.6e-303 1046.2 999 57.8
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 2.6e-303 1045.4 989 58.4
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 6.5e-302 1040.8 1054 55.9
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 4.0e-299 1031.6 1102 53.5
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 2.0e-298 1029.2 1068 54.8
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 3.3e-298 1028.5 994 57.1
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 3.1e-296 1021.9 1010 54.8
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 5.3e-296 1021.1 922 59.3
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 1.0e-294 1016.9 921 59.0
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 1.7e-294 1016.1 996 55.2
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 2.2e-294 1015.8 969 56.8
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 1.5e-293 1013.1 950 56.7
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 4.5e-287 991.5 990 55.5
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 3.8e-286 988.4 889 59.4
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 5.7e-282 974.5 996 53.9
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 9.8e-282 973.8 982 55.1
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 6.3e-281 971.1 900 58.1
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 7.0e-280 967.6 1004 54.4
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 2.3e-278 962.6 822 61.4
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 6.6e-278 961.1 991 53.5
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 1.5e-277 959.9 1229 47.2
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.4e-275 953.4 994 54.3
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 4.0e-275 951.8 864 59.4
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 3.4e-274 948.7 987 54.0
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.1e-272 943.7 1082 49.9
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 3.3e-261 905.6 967 52.3
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 3.0e-254 882.5 940 52.8
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 1.4e-251 873.6 779 60.5
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 6.0e-239 831.6 1027 46.2
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 2.5e-237 826.2 873 50.9
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 9.0e-235 817.8 809 53.6
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.5e-234 817.0 679 63.8
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 9.6e-229 797.7 936 47.4
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 2.9e-225 786.2 731 58.3
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 8.2e-220 768.1 1172 40.7
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 1.6e-191 674.1 623 57.3
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.0e-189 667.2 419 78.8
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.1e-187 661.4 657 56.8
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 7.2e-184 648.7 676 53.6
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 8.5e-177 625.2 801 46.6
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 5.6e-160 569.3 405 72.3
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.8e-158 564.3 354 78.0
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.2e-158 562.8 422 69.0
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 4.2e-131 473.4 476 56.9
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 3.3e-128 463.8 605 47.9
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.3e-126 456.4 718 42.1
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 1.6e-122 444.9 296 71.3
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 6.6e-121 439.5 287 75.3
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 9.0e-118 429.1 313 67.7
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 7.4e-112 409.5 601 43.1
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 3.5e-106 390.6 373 56.6
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.9e-104 384.8 506 44.5
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 3.3e-104 384.0 340 56.5
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 2.4e-86 324.7 224 72.8
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.7e-56 223.8 148 69.6
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 7.7e-53 213.4 154 68.8
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 5.9e-45 187.2 142 65.5
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.3e-41 175.3 245 40.4
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.6e-34 152.5 269 40.9
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 2.3e-33 148.7 167 48.5
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 8.3e-31 140.2 115 62.6
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.0e-28 133.3 76 81.6
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 4.3e-27 127.9 170 43.5
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.9e-23 115.2 86 60.5
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 9.2e-22 110.2 151 42.4
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 8.6e-20 103.6 75 61.3
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 4.0e-17 94.7 162 37.7
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 4.2e-14 84.7 61 65.6
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 2.3e-12 79.0 131 34.4
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.3e-10 73.2 82 48.8
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.1e-09 70.1 46 71.7
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.4e-09 69.7 69 53.6
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 2.4e-09 68.9 42 73.8
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 3.1e-09 68.6 263 27.8
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 5.3e-09 67.8 68 48.5
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 9.0e-09 67.0 55 56.4
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 9.0e-09 67.0 55 56.4
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 7.6e-08 63.9 53 56.6
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.9e-07 62.0 62 50.0
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 7.1e-06 57.4 146 32.2


User provided reference genes

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