Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g08690 Coffea canephora HOM05D007049 ORTHO05D008896 2.7e-46 188.3 97 100.0
Nitab4.5_0000213g0160 Nicotiana tabacum HOM05D007049 ORTHO05D008896 4.5e-33 144.4 94 77.7
QL04p010524 Quercus lobata HOM05D007049 ORTHO05D008896 7.6e-33 143.7 96 75.0
RcHm_v2.0_Chr7g0212661 Rosa chinensis HOM05D007049 ORTHO05D008896 7.6e-33 143.7 96 72.9
TWI12G1157 Tripterygium wilfordii HOM05D007049 ORTHO05D008896 9.9e-33 143.3 92 76.1
Nitab4.5_0000398g0030 Nicotiana tabacum HOM05D007049 ORTHO05D008896 1.3e-32 142.9 94 76.6
Oeu023195.1 Olea europaea HOM05D007049 ORTHO05D008896 2.9e-32 141.7 95 74.7
Hma1.2p1_0400F.1_g144580 Hydrangea macrophylla HOM05D007049 ORTHO05D008896 3.8e-32 141.4 95 74.7
Prupe.8G009200 Prunus persica HOM05D007049 ORTHO05D008896 3.8e-32 141.4 96 72.9
CAN.G4100.1 Capsicum annuum HOM05D007049 ORTHO05D008896 6.4e-32 140.6 95 77.9
Peaxi162Scf00078g00061 Petunia axillaris HOM05D007049 ORTHO05D008896 6.4e-32 140.6 94 75.5
Prupe.8G008400 Prunus persica HOM05D007049 ORTHO05D008896 6.4e-32 140.6 96 72.9
Migut.C01376 Erythranthe guttata HOM05D007049 ORTHO05D008896 8.4e-32 140.2 95 74.7
FAN18G1167 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.4e-31 139.4 96 72.9
FAN18G2563 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.4e-31 139.4 96 72.9
PGSC0003DMG401002024 Solanum tuberosum HOM05D007049 ORTHO05D008896 1.9e-31 139.0 94 77.7
COL.COLO4_06913 Corchorus olitorius HOM05D007049 ORTHO05D008896 2.4e-31 138.7 95 73.7
Cfa019294 Carpinus fangiana HOM05D007049 ORTHO05D008896 3.2e-31 138.3 93 75.3
Solyc09g007070.1 Solanum lycopersicum HOM05D007049 ORTHO05D008896 4.2e-31 137.9 94 76.6
Sopen09g001930 Solanum pennellii HOM05D007049 ORTHO05D008896 4.2e-31 137.9 94 76.6
CiPaw.15G066500 Carya illinoinensis HOM05D007049 ORTHO05D008896 5.4e-31 137.5 96 69.8
RcHm_v2.0_Chr7g0212551 Rosa chinensis HOM05D007049 ORTHO05D008896 7.1e-31 137.1 97 71.1
CAN.G608.33 Capsicum annuum HOM05D007049 ORTHO05D008896 1.2e-30 136.3 92 78.3
CANSAT25G3584 Cannabis sativa HOM05D007049 ORTHO05D008896 3.5e-30 134.8 90 75.6
Sabra01G0012500 Salix brachista HOM05D007049 ORTHO05D008896 3.5e-30 134.8 98 71.4
Cpa.g.sc19.285 Carica papaya HOM05D007049 ORTHO05D008896 4.6e-30 134.4 88 78.4
PGR042G0623 Punica granatum HOM05D007049 ORTHO05D008896 4.6e-30 134.4 91 74.7
SalBow7G2968 Salvia bowleyana HOM05D007049 ORTHO05D008896 4.6e-30 134.4 95 69.5
Thecc.08G177900 Theobroma cacao HOM05D007049 ORTHO05D008896 4.6e-30 134.4 92 75.0
Ah.05g168610 Amaranthus hybridus HOM05D007049 ORTHO05D008896 7.9e-30 133.7 97 71.1
FAN08G2573 Fragaria x ananassa HOM05D007049 ORTHO05D008896 7.9e-30 133.7 86 79.1
Gohir.D13G119000 Gossypium hirsutum HOM05D007049 ORTHO05D008896 1.3e-29 132.9 92 72.8
Gorai.013G133400 Gossypium raimondii HOM05D007049 ORTHO05D008896 1.3e-29 132.9 92 72.8
RcHm_v2.0_Chr7g0212501 Rosa chinensis HOM05D007049 ORTHO05D008896 1.3e-29 132.9 92 71.7
Gohir.A13G115800 Gossypium hirsutum HOM05D007049 ORTHO05D008896 1.8e-29 132.5 92 72.8
TAR624G0348 Trochodendron aralioides HOM05D007049 ORTHO05D008896 1.8e-29 132.5 97 71.1
Lalb_Chr03g0041921 Lupinus albus HOM05D007049 ORTHO05D008896 2.3e-29 132.1 92 73.9
MD10G1006000 Malus domestica HOM05D007049 ORTHO05D008896 3.9e-29 131.3 97 70.1
Duzib177G1207 Durio zibethinus HOM05D007049 ORTHO05D008896 1.1e-28 129.8 92 70.7
Sed0002937 Sechium edule HOM05D007049 ORTHO05D008896 1.1e-28 129.8 94 70.2
Sc20g0003280 Simmondsia chinensis HOM05D007049 ORTHO05D008896 1.1e-28 129.8 80 81.2
CSS0000179 Camellia sinensis var. sinensis HOM05D007049 ORTHO05D008896 1.5e-28 129.4 93 69.9
Ca_24471_v3 Cicer arietinum L. HOM05D007049 ORTHO05D008896 1.5e-28 129.4 91 72.5
RcHm_v2.0_Chr6g0251481 Rosa chinensis HOM05D007049 ORTHO05D008896 1.5e-28 129.4 92 70.7
Nn5g27287 Nelumbo nucifera HOM05D007049 ORTHO05D008896 1.9e-28 129.0 90 71.1
VMungo1215G2220 Vigna mungo HOM05D007049 ORTHO05D008896 4.3e-28 127.9 93 73.1
arahy.Tifrunner.gnm1.ann1.6H88WF Arachis hypogaea HOM05D007049 ORTHO05D008896 5.6e-28 127.5 88 71.6
Psat7g180160 Pisum sativum HOM05D007049 ORTHO05D008896 7.4e-28 127.1 92 71.7
Rhsim08G0116100 Rhododendron simsii HOM05D007049 ORTHO05D008896 7.4e-28 127.1 91 71.4
Eucgr.F02581 Eucalyptus grandis HOM05D007049 ORTHO05D008896 9.6e-28 126.7 87 74.7
Glyma.11G013800 Glycine max HOM05D007049 ORTHO05D008896 1.3e-27 126.3 91 73.6
TAR624G1340 Trochodendron aralioides HOM05D007049 ORTHO05D008896 1.6e-27 125.9 88 72.7
unitig_46.g17984 Utricularia gibba HOM05D007049 ORTHO05D008896 1.6e-27 125.9 96 71.9
TPR.G37942 Trifolium pratense HOM05D007049 ORTHO05D008896 2.1e-27 125.6 89 71.9
Psat2g187280 Pisum sativum HOM05D007049 ORTHO05D008896 2.8e-27 125.2 89 71.9
Os08g0278600 Oryza sativa ssp. japonica HOM05D007049 ORTHO05D008896 3.7e-27 124.8 87 71.3
Phvul.002G036400 Phaseolus vulgaris HOM05D007049 ORTHO05D008896 4.8e-27 124.4 93 69.9
Sabra01G0012700 Salix brachista HOM05D007049 ORTHO05D008896 4.8e-27 124.4 85 72.9
THA.LOC104824284 Tarenaya hassleriana HOM05D007049 ORTHO05D008896 4.8e-27 124.4 86 74.4
Aa31LG5G19930 Aethionema arabicum HOM05D007049 ORTHO05D008896 6.2e-27 124.0 86 70.9
Psat7g180120 Pisum sativum HOM05D007049 ORTHO05D008896 8.1e-27 123.6 92 69.6
CARHR134570 Cardamine hirsuta HOM05D007049 ORTHO05D008896 1.1e-26 123.2 87 69.0
Carub.0004s2178 Capsella rubella HOM05D007049 ORTHO05D008896 1.8e-26 122.5 86 70.9
LjContig00222g0016429 Lotus japonicus HOM05D007049 ORTHO05D008896 1.8e-26 122.5 85 74.1
Thhalv10017481m.g Eutrema salsugineum HOM05D007049 ORTHO05D008896 2.4e-26 122.1 86 68.6
MBI13_g15314_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 2.4e-26 122.1 82 74.4
MBI13_g30327_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 2.4e-26 122.1 82 74.4
Ciclev10023082m.g Citrus clementina HOM05D007049 ORTHO05D008896 4.0e-26 121.3 84 72.6
ECA248G1776 Erigeron canadensis HOM05D007049 ORTHO05D008896 4.0e-26 121.3 97 66.0
DCAR_017595 Daucus carota HOM05D007049 ORTHO05D008896 6.9e-26 120.6 94 67.0
Psat7g180080 Pisum sativum HOM05D007049 ORTHO05D008896 6.9e-26 120.6 92 68.5
arahy.Tifrunner.gnm1.ann1.CT79FY Arachis hypogaea HOM05D007049 ORTHO05D008896 9.0e-26 120.2 84 70.2
EL10Ac7g16149 Beta vulgaris HOM05D007049 ORTHO05D008896 9.0e-26 120.2 88 70.5
BcaC02g07431 Brassica carinata HOM05D007049 ORTHO05D008896 9.0e-26 120.2 82 69.5
C04p67530 Brassica napus HOM05D007049 ORTHO05D008896 9.0e-26 120.2 82 69.5
FAN04G0010 Fragaria x ananassa HOM05D007049 ORTHO05D008896 9.0e-26 120.2 80 73.8
AL4G37190 Arabidopsis lyrata HOM05D007049 ORTHO05D008896 1.2e-25 119.8 86 68.6
Medtr5g008340 Medicago truncatula HOM05D007049 ORTHO05D008896 1.2e-25 119.8 89 69.7
AUR62022356 Chenopodium quinoa HOM05D007049 ORTHO05D008896 1.5e-25 119.4 94 62.8
AUR62034352 Chenopodium quinoa HOM05D007049 ORTHO05D008896 1.5e-25 119.4 94 62.8
DCAR_006853 Daucus carota HOM05D007049 ORTHO05D008896 2.0e-25 119.0 94 64.9
BcaB06g29104 Brassica carinata HOM05D007049 ORTHO05D008896 1.3e-24 116.3 83 68.7
BolC4t28250H Brassica oleracea HOM05D007049 ORTHO05D008896 1.3e-24 116.3 83 68.7
AT2G39725 Arabidopsis thaliana HOM05D007049 ORTHO05D008896 1.7e-24 115.9 86 67.4
A04p30310 Brassica napus HOM05D007049 ORTHO05D008896 1.7e-24 115.9 83 68.7
Prupe.8G008800 Prunus persica HOM05D007049 ORTHO05D008896 1.7e-24 115.9 78 75.6
Psat7g195680 Pisum sativum HOM05D007049 ORTHO05D008896 2.2e-24 115.5 92 67.4
BraA04t18476Z Brassica rapa HOM05D007049 ORTHO05D008896 2.9e-24 115.2 83 67.5
Zm00001eb026180 Zea mays HOM05D007049 ORTHO05D008896 3.8e-24 114.8 93 60.2
ClCG08G001090 Citrullus lanatus HOM05D007049 ORTHO05D008896 6.4e-24 114.0 83 71.1
HanXRQChr04g0114811 Helianthus annuus HOM05D007049 ORTHO05D008896 1.9e-23 112.5 95 61.1
HanXRQChr10g0289041 Helianthus annuus HOM05D007049 ORTHO05D008896 1.9e-23 112.5 95 62.1
Sp4g21990 Schrenkiella parvula HOM05D007049 ORTHO05D008896 1.9e-23 112.5 85 65.9
MELO3C022175.2 Cucumis melo HOM05D007049 ORTHO05D008896 2.4e-23 112.1 82 69.5
CsaV3_5G039970 Cucumis sativus L. HOM05D007049 ORTHO05D008896 2.4e-23 112.1 82 69.5
Aqoxy3G02546 Aquilegia oxysepala HOM05D007049 ORTHO05D008896 1.6e-22 109.4 86 64.0
PSO017G7166 Papaver somniferum HOM05D007049 ORTHO05D008896 2.7e-22 108.6 84 65.5
FAN13G1882 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.0e-21 106.7 72 72.2
HPP92_017350 Vanilla planifolia HOM05D007049 ORTHO05D008896 2.3e-21 105.5 83 66.3
SGA_v2.0_scaffold118G32610 Striga asiatica HOM05D007049 ORTHO05D008896 6.7e-21 104.0 72 73.6
Manes.01G011600 Manihot esculenta HOM05D007049 ORTHO05D008896 2.5e-20 102.1 69 73.9
Potri.001G018100 Populus trichocarpa HOM05D007049 ORTHO05D008896 3.3e-20 101.7 68 79.4
ATR0057G071 Amborella trichopoda HOM05D007049 ORTHO05D008896 2.1e-19 99.0 86 59.3
Prupe.8G009100 Prunus persica HOM05D007049 ORTHO05D008896 2.8e-19 98.6 93 60.2
Pp3c4_6780 Physcomitrium patens HOM05D007049 ORTHO05D008896 1.5e-17 92.8 77 66.2
SHI21473 Sapria himalayana HOM05D000105 ORTHO05D000023 7.6e-17 90.5 63 68.3
SMO353G0203 Selaginella moellendorffii HOM05D007049 ORTHO05D008896 1.3e-16 89.7 76 60.5
Mapoly0004s0187 Marchantia polymorpha HOM05D007049 ORTHO05D008896 1.9e-15 85.9 72 61.1
MD05G1008200 Malus domestica HOM05D007049 ORTHO05D008896 3.5e-14 81.6 66 66.7
MCO05G024 Micromonas commoda HOM05D007049 ORTHO05D008896 2.6e-09 65.5 81 39.5


User provided reference genes

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