Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 2.4e-174 615.5 337 100.0
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 4.3e-75 285.8 347 53.3
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 2.8e-74 283.1 347 52.2
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.5e-67 260.0 344 51.2
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.3e-66 257.7 341 49.3
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.6e-66 256.1 341 49.0
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 4.8e-66 255.8 366 48.1
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 1.5e-64 250.8 357 46.8
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 5.8e-64 248.8 363 46.3
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 7.6e-64 248.4 355 48.7
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 2.2e-63 246.9 340 46.2
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 3.8e-63 246.1 347 46.7
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 1.1e-62 244.6 353 46.5
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 5.5e-62 242.3 386 43.3
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 5.5e-62 242.3 364 44.8
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 9.3e-62 241.5 345 47.8
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 9.3e-62 241.5 361 47.9
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.6e-61 240.7 348 46.6
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 2.7e-61 240.0 345 48.1
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 6.0e-61 238.8 345 47.5
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 6.0e-61 238.8 381 43.6
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 7.9e-61 238.4 382 44.0
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 1.3e-60 237.7 367 46.9
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.8e-60 237.3 358 46.9
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 3.9e-60 236.1 366 45.6
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 8.7e-60 235.0 353 45.9
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.9e-59 233.8 368 44.0
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.5e-59 233.4 383 42.6
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 3.3e-59 233.0 382 42.9
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.3e-59 232.6 352 44.3
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 5.6e-59 232.3 352 46.9
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 9.6e-59 231.5 393 42.7
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.6e-58 230.7 343 44.6
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 4.8e-58 229.2 373 43.2
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 4.8e-58 229.2 365 46.8
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 6.2e-58 228.8 388 41.8
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 6.2e-58 228.8 347 46.7
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 8.1e-58 228.4 365 46.6
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.8e-57 227.3 375 43.5
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.8e-57 227.3 339 48.4
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.4e-57 226.9 347 46.4
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.0e-57 226.1 346 44.2
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 5.3e-57 225.7 378 44.2
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 6.9e-57 225.3 372 45.4
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 6.9e-57 225.3 347 46.1
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.0e-56 223.8 368 45.4
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 2.6e-56 223.4 342 44.4
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.4e-56 223.0 352 42.6
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.4e-56 223.0 362 45.0
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 4.5e-56 222.6 361 44.0
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 7.6e-56 221.9 357 43.7
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.0e-55 221.5 339 47.8
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.3e-55 221.1 341 46.0
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.2e-55 220.3 386 42.2
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 2.9e-55 219.9 351 43.3
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 6.5e-55 218.8 362 44.8
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 6.5e-55 218.8 362 44.8
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 3.2e-54 216.5 375 44.0
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.2e-53 214.5 378 45.5
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 2.1e-53 213.8 328 43.6
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 5.1e-52 209.1 338 40.8
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 6.7e-52 208.8 412 40.5
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.3e-51 206.5 351 42.5
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.7e-51 205.7 393 39.7
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.8e-50 203.4 345 41.2
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 2.8e-50 203.4 338 43.8
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 3.7e-50 203.0 414 39.9
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.8e-50 202.6 346 41.9
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 8.2e-50 201.8 342 42.1
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.4e-49 201.1 339 45.4
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 3.1e-49 199.9 399 37.6
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 4.1e-49 199.5 351 41.6
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 5.3e-49 199.1 338 43.2
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.2e-47 193.7 351 42.7
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.2e-47 193.7 341 43.1
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 7.2e-46 188.7 380 37.1
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 9.3e-46 188.3 351 40.2
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.6e-45 187.6 350 38.6
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 7.9e-45 185.3 363 38.0
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 7.9e-45 185.3 292 45.2
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 7.9e-45 185.3 292 45.2
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.9e-44 183.0 333 40.5
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 8.7e-44 181.8 346 39.9
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 8.7e-44 181.8 388 39.2
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 8.7e-44 181.8 345 39.7
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.1e-43 181.4 346 39.9
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.1e-43 181.4 346 38.2
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 5.7e-43 179.1 339 38.9
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.4e-41 174.5 114 71.9
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.8e-41 174.1 336 37.8
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 3.1e-41 173.3 329 41.9
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 4.1e-41 172.9 331 39.3
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 4.1e-41 172.9 388 35.3
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.5e-40 171.0 335 42.1
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 2.6e-40 170.2 334 39.8
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 3.4e-40 169.9 345 37.4
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 3.4e-40 169.9 332 40.1
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 4.5e-40 169.5 328 39.3
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 9.4e-38 161.8 188 52.7
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.1e-37 160.6 332 37.3
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.6e-37 159.8 162 58.0
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 2.3e-36 157.1 201 48.8
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 5.1e-36 156.0 334 37.4
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 8.8e-36 155.2 351 35.0
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.1e-35 154.8 332 36.1
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-35 154.5 351 35.0
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.5e-35 154.5 351 35.0
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.3e-34 151.4 377 34.7
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 2.2e-34 150.6 324 38.9
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 2.8e-34 150.2 324 38.9
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 2.8e-34 150.2 128 63.3
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 6.3e-34 149.1 171 49.1
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 8.2e-34 148.7 334 35.6
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-33 148.3 333 35.4
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.8e-33 147.5 334 37.4
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.4e-32 143.3 371 34.2
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 1.3e-31 141.4 458 31.7
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.7e-31 141.0 336 35.1
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 2.9e-31 140.2 333 35.1
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 3.2e-30 136.7 166 53.0
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 5.5e-30 136.0 190 41.6
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 9.4e-30 135.2 240 41.2
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.2e-29 134.8 350 34.0
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 2.7e-29 133.7 107 65.4
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 4.7e-29 132.9 109 63.3
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 4.7e-29 132.9 109 63.3
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.1e-29 132.5 345 35.7
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 6.1e-29 132.5 110 60.0
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 6.1e-29 132.5 197 42.1
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 6.1e-29 132.5 110 60.0
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 6.1e-29 132.5 197 42.1
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 7.9e-29 132.1 110 60.0
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.8e-28 131.0 141 53.2
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 6.7e-28 129.0 345 33.9
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 2.0e-27 127.5 188 42.0
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.6e-27 127.1 371 31.3
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.6e-27 127.1 382 32.7
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 3.3e-27 126.7 343 35.6
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.7e-26 124.4 113 61.1
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.7e-26 124.4 335 32.8
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 2.8e-26 123.6 325 40.0
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 6.3e-26 122.5 126 54.0
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 8.2e-26 122.1 73 83.6
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 2.4e-25 120.6 181 43.1
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 2.4e-25 120.6 181 43.1
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 7.0e-25 119.0 153 49.0
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.6e-24 117.1 73 79.5
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 3.5e-24 116.7 178 40.4
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 3.5e-24 116.7 178 40.4
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 3.5e-24 116.7 178 40.4
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 5.9e-24 115.9 352 32.4
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 3.8e-23 113.2 345 31.3
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 1.5e-22 111.3 139 48.9
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 1.2e-21 108.2 125 49.6
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 1.6e-21 107.8 109 54.1
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 2.1e-21 107.5 134 50.0
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 3.6e-21 106.7 191 40.3
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 8.0e-21 105.5 144 36.1
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.1e-19 101.7 108 45.4
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.5e-19 101.3 283 32.5
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.5e-19 101.3 333 28.2
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.7e-18 97.8 344 30.5
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 6.5e-15 85.9 154 35.1
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 2.7e-13 80.5 150 34.7
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 1.8e-12 77.8 164 40.2
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 2.3e-12 77.4 337 24.6
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 8.8e-12 75.5 43 83.7
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.4e-11 73.2 128 37.5
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 5.9e-08 62.8 97 37.1
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 2.9e-07 60.5 178 29.8
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 3.8e-07 60.1 103 36.9
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 1.1e-06 58.5 92 44.6
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 1.9e-06 57.8 103 37.9
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 2.5e-06 57.4 103 35.0
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 3.2e-06 57.0 74 37.8


User provided reference genes

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