Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g08260 Coffea canephora HOM05D008425 ORTHO05D010555 1.0e-85 322.0 170 100.0
Oeu012210.1 Olea europaea HOM05D006739 ORTHO05D008402 6.2e-19 100.1 74 89.2
Dinv22007 Davidia involucrata HOM05D006739 ORTHO05D008402 1.3e-16 92.4 109 83.5
Actinidia19612 Actinidia chinensis HOM05D006739 ORTHO05D008402 2.9e-16 91.3 109 85.3
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 4.9e-16 90.5 109 69.7
MBI16_g14339_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 2.7e-14 84.7 109 84.4
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 7.9e-14 83.2 109 83.5
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 1.3e-13 82.4 109 81.7
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 5.1e-13 80.5 109 81.7
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 8.7e-13 79.7 109 78.9
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 8.7e-13 79.7 109 80.7
Ciclev10002740m.g Citrus clementina HOM05D008425 ORTHO05D010555 1.6e-11 75.5 114 41.2
Atru.chr13.952 Acer truncatum HOM05D008425 ORTHO05D010555 2.1e-11 75.1 97 46.4
Rhsim07G0214300 Rhododendron simsii HOM05D008425 ORTHO05D010555 2.1e-11 75.1 101 43.6
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 2.8e-11 74.7 74 77.0
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 3.7e-11 74.3 109 79.8
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 3.7e-11 74.3 109 79.8
Hma1.2p1_0125F.1_g058620 Hydrangea macrophylla HOM05D008425 ORTHO05D010555 4.8e-11 73.9 96 42.7
Hma1.2p1_0125F.1_g058643 Hydrangea macrophylla HOM05D008425 ORTHO05D010555 4.8e-11 73.9 96 42.7
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 6.2e-11 73.6 109 78.9
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 1.4e-10 72.4 109 78.0
Gorai.010G032400 Gossypium raimondii HOM05D008425 ORTHO05D010555 2.4e-10 71.6 112 42.0
Thecc.08G075500 Theobroma cacao HOM05D008425 ORTHO05D010555 2.4e-10 71.6 95 44.2
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 3.1e-10 71.2 109 58.7
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 3.1e-10 71.2 109 58.7
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 3.1e-10 71.2 109 78.0
GSVIVG01009221001 Vitis vinifera HOM05D008425 ORTHO05D010555 4.0e-10 70.9 172 33.7
Manes.18G057800 Manihot esculenta HOM05D008425 ORTHO05D010555 6.9e-10 70.1 110 40.9
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 9.0e-10 69.7 72 73.6
Eucgr.F02166 Eucalyptus grandis HOM05D008425 ORTHO05D010555 9.0e-10 69.7 90 44.4
TAR152G0002 Trochodendron aralioides HOM05D008425 ORTHO05D010555 9.0e-10 69.7 91 46.2
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 2.0e-09 68.6 109 78.9
Potri.002G109400 Populus trichocarpa HOM05D008425 ORTHO05D010555 2.6e-09 68.2 97 44.3
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 3.4e-09 67.8 73 71.2
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 3.4e-09 67.8 109 76.1
VMungo0647G0534 Vigna mungo HOM05D006739 ORTHO05D008402 4.5e-09 67.4 74 58.1
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 5.8e-09 67.0 70 44.3
Gohir.A06G030350 Gossypium hirsutum HOM05D008425 ORTHO05D010555 7.6e-09 66.6 95 42.1
Gohir.D06G029500 Gossypium hirsutum HOM05D008425 ORTHO05D010555 7.6e-09 66.6 95 42.1
Nn5g29793 Nelumbo nucifera HOM05D008425 ORTHO05D010555 7.6e-09 66.6 106 41.5
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 7.6e-09 66.6 109 75.2
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 1.3e-08 65.9 31 87.1
Cpa.g.c35835 Carica papaya HOM05D008425 ORTHO05D010555 1.7e-08 65.5 106 37.7
Cpa.g.sc177.9 Carica papaya HOM05D008425 ORTHO05D010555 1.7e-08 65.5 106 37.7
CiPaw.08G057700 Carya illinoinensis HOM05D008425 ORTHO05D010555 1.7e-08 65.5 93 39.8
Aqoxy5G02113 Aquilegia oxysepala HOM05D008425 ORTHO05D010555 2.2e-08 65.1 90 41.1
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 2.9e-08 64.7 109 76.1
arahy.Tifrunner.gnm1.ann1.U4C43H Arachis hypogaea HOM05D003661 ORTHO05D004201 2.9e-08 64.7 109 35.8
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 2.9e-08 64.7 109 69.7
Actinidia29653 Actinidia chinensis HOM05D008425 ORTHO05D010555 3.8e-08 64.3 87 37.9
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 3.8e-08 64.3 109 77.1
PGR031G1915 Punica granatum HOM05D008425 ORTHO05D010555 3.8e-08 64.3 120 37.5
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 4.9e-08 63.9 109 75.2
RcHm_v2.0_Chr7g0233511 Rosa chinensis HOM05D008425 ORTHO05D010555 4.9e-08 63.9 94 39.4
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 4.9e-08 63.9 67 53.7
Cfa013824 Carpinus fangiana HOM05D008425 ORTHO05D010555 6.5e-08 63.5 94 36.2
Glyma.06G092500 Glycine max HOM05D008425 ORTHO05D010555 6.5e-08 63.5 92 39.1
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 6.5e-08 63.5 33 78.8
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 8.4e-08 63.2 109 76.1
COL.COLO4_35304 Corchorus olitorius HOM05D008425 ORTHO05D010555 1.1e-07 62.8 92 42.4
QL12p039886 Quercus lobata HOM05D008425 ORTHO05D010555 1.4e-07 62.4 96 37.5
Glyma.04G090800 Glycine max HOM05D008425 ORTHO05D010555 1.9e-07 62.0 93 41.9
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 2.5e-07 61.6 109 76.1
Glyma.01G122400 Glycine max HOM05D008425 ORTHO05D010555 3.2e-07 61.2 93 41.9
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 5.5e-07 60.5 109 47.7
Medtr3g111360 Medicago truncatula HOM05D008425 ORTHO05D010555 7.1e-07 60.1 105 38.1
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 7.1e-07 60.1 74 68.9
TPR.G33374 Trifolium pratense HOM05D008425 ORTHO05D010555 7.1e-07 60.1 106 35.8
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 1.2e-06 59.3 109 31.2
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 1.2e-06 59.3 109 75.2
Gohir.D05G220300 Gossypium hirsutum HOM05D008425 ORTHO05D010555 1.2e-06 59.3 95 40.0
Gorai.009G227300 Gossypium raimondii HOM05D008425 ORTHO05D010555 1.2e-06 59.3 95 40.0
Psat5g018760 Pisum sativum HOM05D008425 ORTHO05D010555 1.2e-06 59.3 106 35.8
Gohir.A05G217100 Gossypium hirsutum HOM05D008425 ORTHO05D010555 2.1e-06 58.5 95 40.0
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 2.1e-06 58.5 26 88.5
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 2.7e-06 58.2 74 66.2
Sed0016221 Sechium edule HOM05D008425 ORTHO05D010555 2.7e-06 58.2 99 33.3
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 3.5e-06 57.8 74 67.6
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 3.5e-06 57.8 74 67.6
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 6.0e-06 57.0 109 75.2
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 6.0e-06 57.0 74 63.5
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 7.9e-06 56.6 109 74.3
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 7.9e-06 56.6 109 67.9


User provided reference genes

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