Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 5.8e-278 960.3 496 100.0
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 3.6e-171 605.5 500 63.2
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 4.9e-168 595.1 502 61.4
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 6.4e-168 594.7 491 64.2
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 1.9e-164 583.2 488 62.5
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 2.3e-162 576.2 495 60.4
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 7.5e-161 571.2 495 60.8
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 6.4e-160 568.2 497 61.0
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 2.4e-159 566.2 496 59.9
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 3.2e-159 565.8 493 60.0
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 4.1e-159 565.5 499 59.5
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 2.1e-158 563.1 494 60.5
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 6.0e-158 561.6 436 65.4
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.7e-157 560.1 494 59.7
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 1.5e-156 557.0 495 58.4
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 2.5e-156 556.2 494 59.7
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 4.3e-156 555.4 494 59.7
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 1.2e-155 553.9 508 59.4
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 4.7e-155 552.0 505 59.8
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 4.7e-155 552.0 490 58.0
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 8.1e-155 551.2 494 59.5
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 1.8e-154 550.1 494 57.7
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 1.8e-154 550.1 498 57.4
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 1.8e-154 550.1 495 57.6
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 1.5e-153 547.0 490 58.0
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 1.5e-153 547.0 496 56.7
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 2.0e-153 546.6 500 59.6
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 3.4e-153 545.8 493 58.8
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 7.6e-153 544.7 495 56.8
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 3.8e-152 542.3 497 58.8
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 3.8e-152 542.3 496 56.0
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 8.4e-152 541.2 451 62.1
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 1.9e-151 540.0 496 56.7
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 2.4e-151 539.7 510 60.0
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 2.4e-151 539.7 506 56.9
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 5.4e-151 538.5 508 56.7
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 1.0e-149 534.3 522 55.7
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.0e-149 534.3 441 61.2
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 1.3e-149 533.9 495 58.0
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.7e-149 533.5 494 57.9
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 1.7e-149 533.5 497 58.8
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 1.2e-147 527.3 495 55.4
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 8.1e-147 524.6 493 54.6
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 8.9e-146 521.2 394 67.8
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 3.4e-145 519.2 492 55.3
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 3.4e-145 519.2 503 54.5
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 3.4e-145 519.2 511 55.0
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 1.4e-143 513.8 467 58.2
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 1.4e-143 513.8 481 57.8
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 3.2e-143 512.7 488 58.2
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 4.2e-143 512.3 495 54.1
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 5.4e-143 511.9 468 56.8
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 9.3e-143 511.1 506 54.7
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 2.1e-142 510.0 489 54.2
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 2.7e-142 509.6 494 55.3
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 6.0e-142 508.4 522 52.1
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 6.0e-142 508.4 498 55.6
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 6.6e-141 505.0 406 61.1
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 8.7e-141 504.6 492 54.5
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 2.5e-140 503.1 525 54.3
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 9.6e-140 501.1 445 57.8
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 2.8e-139 499.6 502 52.6
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 8.1e-139 498.0 498 55.2
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 9.0e-138 494.6 495 55.4
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 2.6e-137 493.0 448 55.6
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 4.9e-136 488.8 438 56.2
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 8.4e-136 488.0 467 54.8
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 7.1e-135 485.0 499 52.7
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 2.1e-134 483.4 494 52.2
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 3.5e-134 482.6 574 48.3
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 6.0e-134 481.9 495 52.7
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 6.7e-133 478.4 494 53.4
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 1.1e-132 477.6 491 53.4
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 1.1e-132 477.6 492 54.1
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 4.3e-132 475.7 494 52.0
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 4.3e-132 475.7 493 52.3
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 1.3e-131 474.2 491 51.1
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 2.4e-130 469.9 499 49.9
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 3.4e-129 466.1 491 51.1
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 7.6e-129 464.9 496 51.6
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 1.7e-128 463.8 495 51.7
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 9.3e-127 458.0 493 50.3
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 9.3e-127 458.0 493 50.3
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 1.6e-126 457.2 492 50.2
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 1.6e-126 457.2 495 51.1
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 4.6e-126 455.7 427 55.5
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 6.0e-126 455.3 492 50.0
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 1.3e-125 454.1 494 50.0
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 2.3e-125 453.4 446 54.0
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 3.9e-125 452.6 493 50.1
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 6.7e-125 451.8 364 63.5
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 9.6e-124 448.0 360 62.5
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 5.8e-121 438.7 500 47.6
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 2.2e-120 436.8 550 46.7
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 1.1e-119 434.5 500 47.2
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 2.1e-118 430.3 495 49.5
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 3.9e-117 426.0 389 57.6
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 6.9e-114 415.2 348 59.8
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 1.0e-104 384.8 396 53.8
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 1.1e-103 381.3 429 49.2
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 3.6e-102 376.3 496 44.0
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 2.0e-97 360.5 489 43.4
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 5.9e-97 359.0 497 43.9
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 4.2e-95 352.8 352 52.8
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 5.3e-90 335.9 250 68.4
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 5.5e-71 272.7 504 35.3
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 8.0e-70 268.9 422 37.2
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 6.8e-69 265.8 186 72.0
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 5.9e-65 252.7 275 49.1
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 1.5e-63 248.1 170 70.0
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 4.1e-58 229.9 278 45.3
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.6e-57 228.0 236 53.4
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 5.0e-56 223.0 293 45.1
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 6.6e-56 222.6 359 40.7
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 1.5e-55 221.5 493 34.3
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 3.4e-44 183.7 108 79.6
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 4.4e-44 183.3 134 64.2
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 2.2e-43 181.0 138 62.3
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 9.5e-39 165.6 173 54.9
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 1.8e-37 161.4 372 29.6
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 5.8e-36 156.4 245 39.6
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 2.9e-35 154.1 285 35.8
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 3.5e-33 147.1 132 58.3
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 4.3e-31 140.2 351 30.2
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 6.2e-30 136.3 257 35.4
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 3.4e-28 130.6 139 49.6
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 4.9e-27 126.7 164 47.6
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 2.1e-25 121.3 109 62.4
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 7.6e-20 102.8 144 45.1
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 5.6e-15 86.7 432 23.6
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 6.2e-14 83.2 106 38.7
Lju279C4T1 Lonicera japonica HOM05D005719 ORTHO05D007030 1.3e-11 75.5 109 47.7
C05p32060 Brassica napus HOM05D005719 ORTHO05D007030 2.1e-06 58.2 89 44.9
BolC5t31933H Brassica oleracea HOM05D005719 ORTHO05D007030 2.1e-06 58.2 89 44.9


User provided reference genes

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