Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 3.8e-33 144.1 64 100.0
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 3.7e-20 100.9 68 64.7
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 4.9e-20 100.5 66 68.2
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 1.8e-19 98.6 70 62.9
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 1.2e-18 95.9 74 60.8
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.2e-18 95.9 66 65.2
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 2.7e-18 94.7 74 59.5
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 5.9e-18 93.6 64 65.6
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 1.7e-17 92.0 64 62.5
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 1.7e-17 92.0 66 60.6
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 2.3e-17 91.7 73 61.6
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 6.6e-17 90.1 66 57.6
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 6.6e-17 90.1 56 64.3
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 6.6e-17 90.1 59 66.1
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 6.6e-17 90.1 73 58.9
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 1.1e-16 89.4 64 59.4
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 1.9e-16 88.6 66 57.6
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 3.3e-16 87.8 47 74.5
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 5.6e-16 87.0 74 51.4
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 1.2e-15 85.9 64 59.4
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 1.2e-15 85.9 58 62.1
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 2.1e-15 85.1 73 58.9
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.6e-15 84.3 64 57.8
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 4.7e-15 84.0 56 60.7
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 4.7e-15 84.0 63 50.8
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 6.2e-15 83.6 68 51.5
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.0e-14 82.8 63 49.2
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.0e-14 82.8 64 56.2
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.0e-14 82.8 64 56.2
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 1.0e-14 82.8 64 56.2
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 2.3e-14 81.6 43 67.4
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 2.3e-14 81.6 56 60.7
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 3.1e-14 81.3 44 68.2
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.1e-14 81.3 64 56.2
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.2e-13 79.3 62 53.2
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 1.5e-13 79.0 43 67.4
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.5e-13 79.0 44 63.6
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 2.0e-13 78.6 61 54.1
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 2.0e-13 78.6 53 60.4
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 2.6e-13 78.2 49 63.3
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 3.4e-13 77.8 68 52.9
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 5.8e-13 77.0 65 47.7
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.2e-12 75.1 63 49.2
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 2.9e-12 74.7 43 65.1
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 2.9e-12 74.7 51 52.9
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 4.9e-12 73.9 43 65.1
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 4.9e-12 73.9 44 61.4
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 6.4e-12 73.6 64 48.4
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 1.1e-11 72.8 43 60.5
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 1.4e-11 72.4 51 52.9
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 1.9e-11 72.0 65 46.2
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 2.4e-11 71.6 63 46.0
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 2.4e-11 71.6 43 58.1
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.2e-11 71.2 43 60.5
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.2e-11 71.2 43 60.5
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 3.2e-11 71.2 43 60.5
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 5.4e-11 70.5 51 49.0
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 9.2e-11 69.7 43 58.1
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 9.2e-11 69.7 43 55.8
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 9.2e-11 69.7 43 55.8
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 9.2e-11 69.7 59 49.2
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 1.2e-10 69.3 65 43.1
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 1.6e-10 68.9 43 58.1
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 1.6e-10 68.9 43 53.5
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 2.0e-10 68.6 43 55.8
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 2.0e-10 68.6 61 44.3
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 2.0e-10 68.6 43 55.8
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 2.7e-10 68.2 43 53.5
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 2.7e-10 68.2 43 58.1
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 3.5e-10 67.8 43 53.5
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 3.5e-10 67.8 65 46.2
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 3.5e-10 67.8 43 55.8
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 6.0e-10 67.0 63 46.0
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 7.8e-10 66.6 43 51.2
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 7.8e-10 66.6 59 42.4
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 7.8e-10 66.6 65 41.5
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 7.8e-10 66.6 43 55.8
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 1.0e-09 66.2 43 51.2
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 1.0e-09 66.2 43 55.8
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 1.0e-09 66.2 58 43.1
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 1.7e-09 65.5 64 42.2
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 1.7e-09 65.5 61 41.0
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 5.0e-09 63.9 58 41.4
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 6.6e-09 63.5 43 53.5
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 6.6e-09 63.5 43 53.5
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 6.6e-09 63.5 46 56.5
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.9e-08 62.0 68 47.1
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 7.3e-08 60.1 43 48.8
Nn5g28989 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.4e-06 55.8 32 65.6


User provided reference genes

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