Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 2.6e-113 412.1 217 100.0
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 4.3e-84 315.1 214 75.7
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 5.6e-84 314.7 216 75.5
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 1.0e-82 310.5 214 74.3
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 1.2e-81 307.0 214 74.3
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 4.4e-81 305.1 217 71.4
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 7.5e-81 304.3 206 75.7
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 1.7e-80 303.1 215 72.1
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 6.4e-80 301.2 216 70.8
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 7.0e-79 297.7 217 71.4
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 9.2e-79 297.4 219 69.9
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 9.2e-79 297.4 219 71.2
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 9.2e-79 297.4 241 65.6
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 1.2e-78 297.0 218 68.8
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 2.0e-78 296.2 217 71.4
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 2.7e-78 295.8 219 69.4
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 4.6e-78 295.0 218 70.6
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 6.0e-78 294.7 219 69.4
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 6.0e-78 294.7 219 70.3
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 7.8e-78 294.3 215 72.1
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 1.0e-77 293.9 217 71.0
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 1.3e-77 293.5 219 68.9
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 1.3e-77 293.5 219 69.9
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 5.0e-77 291.6 218 69.7
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 6.6e-77 291.2 217 68.7
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 6.6e-77 291.2 215 70.7
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 8.6e-77 290.8 221 69.2
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 8.6e-77 290.8 226 68.1
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 1.9e-76 289.7 221 67.9
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 2.5e-76 289.3 219 69.4
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 4.3e-76 288.5 219 67.1
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 5.6e-76 288.1 217 68.2
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 5.6e-76 288.1 218 69.7
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 9.5e-76 287.3 217 67.7
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 2.8e-75 285.8 222 65.8
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 2.8e-75 285.8 218 67.9
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 6.2e-75 284.6 201 70.6
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 8.1e-75 284.3 196 74.0
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.4e-74 283.5 216 69.9
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 1.4e-74 283.5 227 65.2
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 2.3e-74 282.7 245 63.7
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 3.1e-74 282.3 217 67.3
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 3.1e-74 282.3 217 68.7
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 5.2e-74 281.6 218 65.6
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 5.2e-74 281.6 216 67.6
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 8.9e-74 280.8 216 68.5
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 1.5e-73 280.0 217 65.4
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 2.6e-73 279.3 217 68.7
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 2.6e-73 279.3 221 67.4
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 3.4e-73 278.9 221 66.5
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 3.4e-73 278.9 217 67.7
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 3.4e-73 278.9 220 65.9
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 4.4e-73 278.5 216 68.5
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 4.4e-73 278.5 217 66.4
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 5.8e-73 278.1 216 68.1
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 5.8e-73 278.1 217 66.4
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 7.5e-73 277.7 217 67.3
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 1.3e-72 276.9 217 65.9
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 2.2e-72 276.2 217 67.7
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 3.7e-72 275.4 216 66.2
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 8.3e-72 274.2 221 64.3
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 1.9e-71 273.1 217 65.9
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 1.2e-70 270.4 166 79.5
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 2.1e-70 269.6 219 66.2
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 7.8e-70 267.7 217 66.8
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 7.8e-70 267.7 217 67.3
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 1.9e-68 263.1 201 67.7
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 3.3e-68 262.3 221 62.4
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 4.3e-68 261.9 212 65.6
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 1.2e-67 260.4 222 60.8
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 1.4e-66 256.9 183 68.3
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 1.8e-66 256.5 232 59.9
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 2.3e-66 256.1 166 75.9
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 1.5e-65 253.4 219 61.6
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 1.5e-65 253.4 208 60.6
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 2.0e-65 253.1 213 61.0
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 2.0e-65 253.1 166 74.7
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 5.8e-65 251.5 166 74.7
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 2.9e-64 249.2 166 72.3
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 1.9e-63 246.5 170 72.4
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 4.6e-62 241.9 214 60.7
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 1.0e-61 240.7 192 64.1
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 1.1e-60 237.3 153 77.1
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 1.2e-54 217.2 220 53.6
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 1.2e-54 217.2 228 53.1
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 4.6e-54 215.3 138 76.1
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 1.6e-51 206.8 155 72.3
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 3.1e-50 202.6 140 69.3
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 3.2e-47 192.6 217 52.5
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 1.8e-45 186.8 154 66.2
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 6.9e-42 174.9 145 69.0
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 6.9e-42 174.9 135 63.7
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 9.0e-42 174.5 145 68.3
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 9.6e-28 127.9 94 70.2
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 2.2e-24 116.7 77 76.6
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 2.2e-24 116.7 77 76.6
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 7.9e-22 108.2 213 36.2
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 1.6e-19 100.5 68 76.5
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 2.8e-19 99.8 59 81.4
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 9.4e-15 84.7 157 38.2
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 3.6e-14 82.8 73 45.2
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 3.3e-12 76.3 160 35.6
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 1.3e-11 74.3 78 52.6
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.2e-06 57.8 35 80.0


User provided reference genes

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