Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 1.7e-224 782.3 391 100.0
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.1e-158 562.8 388 72.9
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.1e-158 562.8 388 72.9
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 2.0e-156 556.2 392 71.9
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.0e-156 556.2 388 72.2
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 4.4e-156 555.1 395 71.4
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 5.8e-156 554.7 388 71.4
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 2.2e-155 552.7 399 71.4
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 1.6e-153 546.6 396 70.7
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 2.0e-153 546.2 397 72.5
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 4.6e-153 545.0 397 72.3
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 1.0e-152 543.9 397 72.5
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 1.7e-152 543.1 398 70.4
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 2.5e-151 539.3 387 70.5
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 1.2e-150 537.0 396 67.7
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 6.2e-150 534.6 391 70.6
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 8.1e-150 534.3 388 70.9
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 8.1e-150 534.3 396 69.9
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 1.1e-149 533.9 412 69.9
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.4e-149 533.5 398 70.1
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 2.3e-149 532.7 395 70.1
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 2.3e-149 532.7 395 67.3
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 2.3e-149 532.7 390 70.8
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 4.0e-149 531.9 398 69.8
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 8.9e-149 530.8 389 69.2
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 2.6e-148 529.3 389 67.4
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 5.8e-148 528.1 385 68.8
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 7.5e-148 527.7 396 69.4
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.7e-147 526.6 412 68.0
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 1.7e-147 526.6 396 66.9
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 2.9e-147 525.8 389 68.6
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 3.7e-147 525.4 396 68.9
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 3.7e-147 525.4 397 67.5
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 8.3e-147 524.2 413 68.5
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 8.3e-147 524.2 382 69.4
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 1.1e-146 523.9 396 66.7
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 1.6e-145 520.0 397 67.5
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 4.6e-145 518.5 397 68.3
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 4.6e-145 518.5 398 66.6
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 7.8e-145 517.7 392 68.6
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 7.8e-145 517.7 392 69.4
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.3e-144 516.2 388 67.3
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 3.0e-144 515.8 391 67.3
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 3.9e-144 515.4 389 66.1
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 5.1e-144 515.0 391 67.5
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 5.1e-144 515.0 392 67.6
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 6.6e-144 514.6 391 66.8
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.1e-143 513.8 415 64.6
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.3e-143 512.3 388 66.8
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 1.2e-142 510.4 397 66.8
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 1.2e-142 510.4 399 68.7
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 2.8e-142 509.2 392 66.1
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 4.4e-140 501.9 397 66.0
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 5.8e-140 501.5 388 64.7
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 9.9e-140 500.7 412 67.0
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 2.9e-139 499.2 395 65.6
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 3.7e-139 498.8 423 62.6
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 4.9e-139 498.4 395 65.3
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 6.4e-139 498.0 388 66.2
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 8.4e-139 497.7 395 65.6
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 1.1e-138 497.3 395 65.1
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 1.4e-138 496.9 398 65.1
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 1.9e-138 496.5 423 61.9
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.4e-138 496.1 355 71.5
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 4.1e-138 495.4 395 64.8
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 5.4e-138 495.0 396 65.7
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 7.1e-138 494.6 406 64.3
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 7.8e-137 491.1 392 64.5
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 3.0e-136 489.2 440 59.5
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 8.6e-136 487.6 395 63.5
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 5.6e-135 485.0 379 66.5
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 9.6e-135 484.2 391 65.2
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.6e-134 483.4 431 61.5
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 1.4e-133 480.3 388 64.4
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.4e-133 480.3 384 64.1
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 1.8e-133 479.9 392 63.5
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 1.2e-132 477.2 400 62.2
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 2.0e-132 476.5 399 63.2
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 2.6e-132 476.1 389 63.0
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 3.4e-132 475.7 391 62.9
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 9.9e-132 474.2 385 64.2
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 2.2e-131 473.0 399 62.4
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 7.1e-130 468.0 399 60.9
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 1.2e-129 467.2 399 61.4
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 3.5e-129 465.7 391 64.2
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 3.9e-128 462.2 398 62.1
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 2.5e-127 459.5 398 61.6
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 7.3e-127 458.0 391 63.4
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 9.6e-127 457.6 389 61.2
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 3.1e-125 452.6 404 60.4
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 7.6e-124 448.0 391 60.4
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 3.8e-123 445.7 415 60.7
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 3.9e-120 435.6 394 59.9
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 1.9e-119 433.3 396 57.8
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 3.6e-118 429.1 385 58.7
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.4e-117 427.2 385 58.4
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 3.4e-116 422.5 393 57.5
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 3.4e-116 422.5 307 70.4
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 1.2e-113 414.1 446 54.0
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 2.1e-113 413.3 375 60.3
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 3.5e-113 412.5 378 59.0
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 4.6e-113 412.1 396 56.6
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 9.6e-111 404.4 390 56.2
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 3.8e-107 392.5 395 54.7
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 2.7e-105 386.3 398 55.3
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.5e-103 379.8 421 51.8
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 1.8e-101 373.6 270 69.3
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 2.4e-101 373.2 397 54.7
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 1.1e-90 337.8 396 48.2
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 9.7e-87 324.7 305 58.0
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 1.7e-86 323.9 394 47.2
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 4.8e-86 322.4 301 57.8
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 4.5e-84 315.8 388 46.4
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 1.0e-80 304.7 378 46.8
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 4.5e-76 289.3 422 42.9
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 1.1e-71 274.6 267 57.7
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 1.5e-66 257.7 235 56.6
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 5.9e-60 235.7 345 46.4
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 1.0e-56 224.9 359 44.6
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 7.5e-55 218.8 242 50.4
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 1.8e-53 214.2 155 72.3
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 6.4e-46 189.1 148 59.5
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.4e-37 159.5 110 71.8
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.6e-36 157.9 110 70.9
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.7e-36 157.1 110 71.8
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.9e-34 151.0 110 69.1
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 3.9e-27 126.7 116 62.1
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 5.6e-26 122.9 116 61.2
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 9.5e-26 122.1 96 66.7
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 2.1e-25 120.9 124 50.0
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 8.9e-24 115.5 92 58.7
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 3.2e-21 107.1 71 74.6
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 4.1e-21 106.7 65 80.0
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 6.2e-17 92.8 163 39.3
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.4e-13 81.6 50 78.0
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 3.5e-12 77.0 54 63.0
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 3.0e-11 73.9 334 26.6
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.1e-10 72.0 94 42.6
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 3.6e-09 67.0 71 49.3
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.1e-08 65.5 74 50.0
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 4.5e-07 60.1 61 49.2


User provided reference genes

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