Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 0.0e+00 1327.4 879 100.0
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 1.2e-233 813.9 879 61.8
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 1.6e-230 803.5 879 56.2
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 7.4e-228 794.7 891 62.9
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 3.3e-220 769.2 876 63.7
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 7.4e-220 768.1 879 57.7
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 5.3e-218 761.9 884 59.7
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 3.5e-217 759.2 881 54.7
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.1e-215 754.2 885 61.5
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 7.2e-215 751.5 879 59.3
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 2.4e-210 736.5 841 56.2
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 1.0e-208 731.1 878 59.3
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 2.1e-206 723.4 881 58.6
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 1.8e-205 720.3 875 60.5
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 3.0e-205 719.5 876 51.3
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 4.4e-204 715.7 875 56.6
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 1.3e-203 714.1 879 59.0
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 1.1e-202 711.1 870 59.2
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 1.0e-197 694.5 875 53.6
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 1.5e-196 690.6 875 56.1
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 6.3e-195 685.3 870 54.4
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 6.3e-195 685.3 875 54.6
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 1.8e-194 683.7 875 52.1
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 3.2e-194 682.9 875 55.7
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 5.9e-193 678.7 1010 54.0
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 1.3e-192 677.6 952 56.7
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 3.3e-191 672.9 878 55.2
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 3.3e-191 672.9 878 55.2
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 3.3e-191 672.9 875 55.0
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 3.3e-191 672.9 883 53.2
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 7.3e-191 671.8 879 54.7
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 1.2e-190 671.0 875 55.3
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 3.6e-190 669.5 875 54.9
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 3.1e-189 666.4 879 52.8
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 4.0e-189 666.0 875 53.7
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 5.2e-189 665.6 875 56.6
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 6.8e-189 665.2 848 54.5
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 2.2e-187 660.2 874 60.0
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 3.2e-186 656.4 875 54.9
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 4.1e-186 656.0 903 54.4
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 1.7e-184 650.6 875 56.3
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 1.2e-180 637.9 877 53.7
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 1.5e-180 637.5 860 49.8
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 1.7e-179 634.0 922 51.8
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 2.2e-179 633.6 877 46.5
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 2.9e-179 633.3 880 54.8
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 3.7e-179 632.9 881 49.3
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 4.1e-178 629.4 877 52.6
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.3e-176 624.4 884 51.5
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.3e-176 623.6 877 53.1
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 3.0e-176 623.2 877 53.1
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 3.3e-175 619.8 881 48.7
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.0e-172 610.5 827 52.6
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 5.4e-170 602.4 878 49.2
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 9.2e-170 601.7 855 52.4
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 1.2e-169 601.3 877 55.1
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 1.8e-165 587.4 918 52.5
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 1.2e-164 584.7 877 51.4
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 2.0e-164 583.9 868 49.9
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 7.6e-164 582.0 869 48.1
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 1.3e-163 581.3 880 51.9
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 1.9e-162 577.4 820 52.9
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 5.4e-162 575.9 811 52.2
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 1.6e-161 574.3 880 48.9
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.0e-160 571.6 877 50.9
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.3e-158 564.7 883 49.7
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 6.2e-158 562.4 884 49.1
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 5.3e-157 559.3 879 49.7
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 6.9e-157 558.9 877 44.8
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 4.4e-156 556.2 878 52.2
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 4.4e-156 556.2 884 49.3
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 9.9e-156 555.1 877 52.3
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 1.1e-154 551.6 878 51.8
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 1.9e-154 550.8 878 47.8
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 3.3e-151 540.0 880 55.2
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 9.6e-151 538.5 877 47.8
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 1.1e-149 535.0 877 48.9
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 2.9e-147 526.9 876 43.9
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 9.3e-146 521.9 708 46.3
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 1.9e-143 514.2 877 45.4
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 2.1e-142 510.8 879 46.3
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 6.5e-139 499.2 883 47.5
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 7.9e-137 492.3 838 45.7
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 5.1e-136 489.6 738 52.2
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 7.4e-135 485.7 877 48.6
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 2.8e-134 483.8 844 46.0
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 2.6e-132 477.2 873 41.0
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 3.5e-129 466.8 878 43.4
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 8.7e-128 462.2 852 41.5
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 1.9e-127 461.1 738 50.9
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 1.3e-126 458.4 887 42.4
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 1.6e-126 458.0 878 43.8
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 3.7e-126 456.8 875 47.9
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 3.7e-126 456.8 875 47.9
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 1.4e-125 454.9 861 41.0
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 2.4e-125 454.1 832 50.8
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.0e-124 451.1 629 48.3
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 1.7e-123 448.0 873 43.8
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 2.9e-123 447.2 878 39.4
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 2.1e-121 441.0 740 50.5
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 4.3e-119 433.3 880 39.7
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 5.7e-119 433.0 880 39.7
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 5.7e-119 433.0 880 39.7
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 1.3e-118 431.8 847 37.5
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 2.8e-118 430.6 618 46.9
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 2.4e-117 427.6 774 45.5
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 5.3e-117 426.4 880 40.8
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 4.5e-116 423.3 878 42.1
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 7.7e-116 422.5 880 40.2
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 5.0e-115 419.9 884 40.5
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 7.2e-114 416.0 445 57.3
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 4.7e-113 413.3 624 49.5
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 7.9e-113 412.5 875 40.2
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 7.9e-113 412.5 880 39.7
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 3.3e-111 407.1 934 36.3
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 7.4e-111 406.0 666 50.0
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 1.5e-106 391.7 935 38.6
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 7.2e-106 389.4 663 54.3
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.7e-105 387.5 632 43.8
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 3.6e-105 387.1 595 44.5
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 1.0e-99 369.0 920 37.8
SHI03709 Sapria himalayana HOM05D003496 ORTHO05D000023 6.8e-96 356.3 558 42.5
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 2.6e-95 354.4 663 44.9
Lj5A269G20 Lonicera japonica HOM05D003496 ORTHO05D003909 1.5e-90 338.6 464 50.0
Actinidia10322 Actinidia chinensis HOM05D003496 ORTHO05D003909 5.2e-88 330.1 281 68.7
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 4.4e-87 327.0 588 39.6
Solyc04g074120.4 Solanum lycopersicum HOM05D003496 ORTHO05D003909 7.5e-87 326.2 491 59.1
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 1.9e-82 311.6 940 33.3
Actinidia30771 Actinidia chinensis HOM05D003496 ORTHO05D003909 3.3e-82 310.8 278 67.3
TPR.G7886 Trifolium pratense HOM05D003496 ORTHO05D003909 1.2e-68 265.8 463 38.4
Actinidia10321 Actinidia chinensis HOM05D003496 ORTHO05D003909 4.7e-65 253.8 190 71.1
Actinidia30770 Actinidia chinensis HOM05D003496 ORTHO05D003909 3.2e-61 241.1 328 62.2
TPR.G7904 Trifolium pratense HOM05D003496 ORTHO05D003909 6.8e-56 223.4 190 63.7
CDE10G0427 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 2.0e-55 221.9 354 43.2
CDE10G0763 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 4.4e-55 220.7 499 37.7
RcHm_v2.0_Chr0c28g0501041 Rosa chinensis HOM05D003496 ORTHO05D003909 9.2e-53 213.0 259 49.0
RcHm_v2.0_Chr7g0243601 Rosa chinensis HOM05D003496 ORTHO05D003909 9.2e-53 213.0 259 49.0
Cc02_g10170 Coffea canephora HOM05D003496 ORTHO05D003909 1.3e-51 209.1 120 90.8
RcHm_v2.0_Chr0c28g0501031 Rosa chinensis HOM05D003496 ORTHO05D003909 1.1e-50 206.1 191 62.3
RcHm_v2.0_Chr7g0243591 Rosa chinensis HOM05D003496 ORTHO05D003909 1.1e-50 206.1 191 62.3
CAN.G1227.18 Capsicum annuum HOM05D003496 ORTHO05D003909 7.3e-50 203.4 144 79.2
Lalb_Chr10g0102391 Lupinus albus HOM05D003496 ORTHO05D003909 8.9e-48 196.4 135 83.0
CARHR022600 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.7e-46 192.2 193 57.0
Duzib093G1287 Durio zibethinus HOM05D003496 ORTHO05D003909 2.4e-45 188.3 672 29.2
FAN18G0092 Fragaria x ananassa HOM05D003496 ORTHO05D003909 3.3e-42 177.9 217 51.6
Duzib093G0574 Durio zibethinus HOM05D003496 ORTHO05D003909 1.8e-40 172.2 227 48.5
SEGI_13289 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 9.0e-40 169.9 442 33.3
FAN08G0731 Fragaria x ananassa HOM05D003496 ORTHO05D003909 5.8e-39 167.2 221 51.1
C05p24820 Brassica napus HOM05D000415 ORTHO05D003909 9.9e-39 166.4 271 45.8
BolC5t31211H Brassica oleracea HOM05D003496 ORTHO05D003909 9.9e-39 166.4 271 45.8
VMungo0647G2412 Vigna mungo HOM05D003496 ORTHO05D003909 2.9e-38 164.9 120 70.8
MSTRG.1477 Avicennia marina HOM05D003496 ORTHO05D003909 2.7e-36 158.3 105 81.0
Cc02_g31800 Coffea canephora HOM05D003496 ORTHO05D003909 1.0e-35 156.4 120 70.8
CARHR022630 Cardamine hirsuta HOM05D003496 ORTHO05D003909 9.0e-32 143.3 295 34.2
BcaB03g15987 Brassica carinata HOM05D003496 ORTHO05D003909 5.1e-27 127.5 155 49.7
CARHR022660 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.6e-25 122.5 603 32.3
RcHm_v2.0_Chr0c28g0500941 Rosa chinensis HOM05D003496 ORTHO05D003909 8.1e-25 120.2 420 29.3
Glyma.14G121700 Glycine max HOM05D003496 ORTHO05D003909 2.4e-24 118.6 174 46.0
TPR.G7899 Trifolium pratense HOM05D003496 ORTHO05D003909 1.5e-23 115.9 103 61.2
RcHm_v2.0_Chr0c28g0500951 Rosa chinensis HOM05D003496 ORTHO05D003909 4.5e-23 114.4 146 45.2
FAN08G1794 Fragaria x ananassa HOM05D003496 ORTHO05D003909 5.8e-23 114.0 211 38.9
SMO230G0003 Selaginella moellendorffii HOM05D003496 ORTHO05D003909 1.3e-19 102.8 381 29.1
SEGI_27299 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 7.4e-18 97.1 468 26.3
ECA233G3681 Erigeron canadensis HOM05D003496 ORTHO05D003909 4.8e-17 94.4 276 30.4
SHI03714 Sapria himalayana HOM05D003496 ORTHO05D003909 4.8e-17 94.4 111 49.5
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 9.0e-16 90.1 179 63.7
C06p20140 Brassica napus HOM05D000331 ORTHO05D027779 2.9e-14 85.1 135 45.2
Haze_22265 Corylus avellana HOM05D003496 ORTHO05D003909 2.9e-14 85.1 66 72.7
FvH4_5g37878 Fragaria vesca HOM05D003496 ORTHO05D003909 3.8e-14 84.7 81 53.1
FvH4_5g39261 Fragaria vesca HOM05D003496 ORTHO05D003909 6.5e-14 84.0 70 60.0
Mapoly0040s0123 Marchantia polymorpha HOM05D003496 ORTHO05D003909 1.4e-13 82.8 609 22.0
BcaC08g44544 Brassica carinata HOM05D003496 ORTHO05D003909 4.2e-13 81.3 99 54.5
RcHm_v2.0_Chr7g0227211 Rosa chinensis HOM05D003496 ORTHO05D003909 4.2e-13 81.3 72 65.3
FvH4_5g37879 Fragaria vesca HOM05D003496 ORTHO05D003909 7.2e-13 80.5 85 56.5
FvH4_5g32650 Fragaria vesca HOM05D003496 ORTHO05D003909 6.1e-12 77.4 99 44.4
RcHm_v2.0_Chr7g0243501 Rosa chinensis HOM05D003496 ORTHO05D003909 7.9e-12 77.0 55 65.5
RcHm_v2.0_Chr2g0168611 Rosa chinensis HOM05D003496 ORTHO05D003909 5.1e-11 74.3 70 61.4
BcaC05g26434 Brassica carinata HOM05D000415 ORTHO05D003909 6.7e-11 73.9 288 32.3
TPR.G16743 Trifolium pratense HOM05D003496 ORTHO05D003909 1.1e-10 73.2 69 59.4
BolC6t37194H Brassica oleracea HOM05D013757 ORTHO05D027779 2.5e-10 72.0 135 40.7
Aa31sc26G120 Aethionema arabicum HOM05D003496 ORTHO05D003909 7.4e-10 70.5 110 42.7
SHI03711 Sapria himalayana HOM05D003496 ORTHO05D003909 6.3e-09 67.4 40 82.5
SEGI_01702 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 5.3e-08 64.3 103 40.8
VMungo0647G2290 Vigna mungo HOM05D003496 ORTHO05D003909 6.9e-08 63.9 40 77.5
CARHR022640 Cardamine hirsuta HOM05D003496 ORTHO05D003909 7.7e-07 60.5 100 43.0
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.3e-06 59.7 324 28.4


User provided reference genes

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