Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g07210 Coffea canephora HOM05D005003 ORTHO05D006220 1.1e-78 296.6 151 100.0
Solyc04g074140.4 Solanum lycopersicum HOM05D005003 ORTHO05D006220 3.7e-50 201.8 150 69.3
Sopen04g029320 Solanum pennellii HOM05D005003 ORTHO05D006220 3.7e-50 201.8 150 69.3
PGSC0003DMG400006406 Solanum tuberosum HOM05D005003 ORTHO05D006220 6.2e-50 201.1 150 70.0
Peaxi162Scf00041g01737 Petunia axillaris HOM05D005003 ORTHO05D006220 5.3e-49 198.0 139 72.7
Oeu046301.1 Olea europaea HOM05D005003 ORTHO05D006220 5.8e-48 194.5 142 71.8
Migut.C00095 Erythranthe guttata HOM05D005003 ORTHO05D006220 3.2e-46 188.7 152 66.4
Nitab4.5_0005777g0050 Nicotiana tabacum HOM05D005003 ORTHO05D006220 3.2e-46 188.7 152 65.1
Lj4A723T22 Lonicera japonica HOM05D005003 ORTHO05D006220 7.1e-46 187.6 149 69.1
CAN.G101.26 Capsicum annuum HOM05D005003 ORTHO05D006220 2.1e-45 186.0 149 63.8
HanXRQChr11g0327771 Helianthus annuus HOM05D005003 ORTHO05D006220 1.3e-44 183.3 150 66.7
MSTRG.24973 Avicennia marina HOM05D005003 ORTHO05D006220 3.0e-44 182.2 152 63.8
CSS0024644 Camellia sinensis var. sinensis HOM05D005003 ORTHO05D006220 1.5e-43 179.9 150 64.7
ECA246G4896 Erigeron canadensis HOM05D005003 ORTHO05D006220 3.3e-43 178.7 158 62.0
Rhsim06G0082100 Rhododendron simsii HOM05D005003 ORTHO05D006220 1.6e-42 176.4 139 68.3
vmacro21269 Vaccinium macrocarpon HOM05D005003 ORTHO05D006220 2.8e-42 175.6 158 62.0
Hma1.2p1_0575F.1_g181570 Hydrangea macrophylla HOM05D005003 ORTHO05D006220 4.1e-41 171.8 155 60.6
Dinv44775 Davidia involucrata HOM05D005003 ORTHO05D006220 5.9e-40 167.9 155 60.0
SGA_v2.0_scaffold729G53525 Striga asiatica HOM05D005003 ORTHO05D006220 1.9e-38 162.9 139 64.0
DCAR_008734 Daucus carota HOM05D005003 ORTHO05D006220 1.6e-37 159.8 145 58.6
Lsat_1_v5_gn_6_103020 Lactuca sativa HOM05D005003 ORTHO05D006220 2.7e-37 159.1 137 65.7
Haze_22267 Corylus avellana HOM05D005003 ORTHO05D006220 1.0e-36 157.1 162 54.3
Oeu012928.1 Olea europaea HOM05D005003 ORTHO05D006220 1.9e-35 152.9 189 49.2
Cfa013635 Carpinus fangiana HOM05D005003 ORTHO05D006220 1.1e-33 147.1 158 53.8
Dinv14326 Davidia involucrata HOM05D005003 ORTHO05D006220 2.4e-33 146.0 155 54.8
Ciclev10003185m.g Citrus clementina HOM05D005003 ORTHO05D006220 5.3e-33 144.8 121 62.0
Nn1g05355 Nelumbo nucifera HOM05D005003 ORTHO05D006220 6.9e-33 144.4 127 61.4
Atru.chr13.1187 Acer truncatum HOM05D005003 ORTHO05D006220 9.1e-33 144.1 126 61.1
Eucgr.B00022 Eucalyptus grandis HOM05D005003 ORTHO05D006220 3.4e-32 142.1 111 64.9
PGR044G0640 Punica granatum HOM05D005003 ORTHO05D006220 4.5e-32 141.7 123 63.4
QL12p036782 Quercus lobata HOM05D005003 ORTHO05D006220 4.5e-32 141.7 125 58.4
SalBow7G4179 Salvia bowleyana HOM05D005003 ORTHO05D006220 1.0e-31 140.6 130 59.2
Nn5g30108 Nelumbo nucifera HOM05D005003 ORTHO05D006220 2.2e-31 139.4 124 59.7
FAN04G0108 Fragaria x ananassa HOM05D005003 ORTHO05D006220 5.0e-31 138.3 138 54.3
GSVIVG01009030001 Vitis vinifera HOM05D005003 ORTHO05D006220 5.0e-31 138.3 151 54.3
FAN18G2350 Fragaria x ananassa HOM05D005003 ORTHO05D006220 6.5e-31 137.9 138 53.6
RcHm_v2.0_Chr7g0238981 Rosa chinensis HOM05D005003 ORTHO05D006220 6.5e-31 137.9 144 52.8
FAN08G0347 Fragaria x ananassa HOM05D005003 ORTHO05D006220 1.4e-30 136.7 138 53.6
Duzib116G0723 Durio zibethinus HOM05D005003 ORTHO05D006220 1.9e-30 136.3 126 61.1
MBI05_g19344_MAGBIO Magnolia biondii HOM05D005003 ORTHO05D006220 1.9e-30 136.3 143 55.9
Thecc.08G106800 Theobroma cacao HOM05D005003 ORTHO05D006220 3.2e-30 135.6 134 58.2
FvH4_5g37331 Fragaria vesca HOM05D005003 ORTHO05D006220 7.2e-30 134.4 137 53.3
RcHm_v2.0_Chr4g0408951 Rosa chinensis HOM05D005003 ORTHO05D006220 7.2e-30 134.4 122 55.7
FAN13G0908 Fragaria x ananassa HOM05D005003 ORTHO05D006220 9.4e-30 134.0 138 52.2
Lalb_Chr11g0073941 Lupinus albus HOM05D005003 ORTHO05D006220 1.2e-29 133.7 114 61.4
Gorai.005G094100 Gossypium raimondii HOM05D005003 ORTHO05D006220 1.6e-29 133.3 153 51.0
CiPaw.07G180100 Carya illinoinensis HOM05D005003 ORTHO05D006220 2.1e-29 132.9 126 57.9
Gohir.D02G083500 Gossypium hirsutum HOM05D005003 ORTHO05D006220 2.1e-29 132.9 127 56.7
A09p32030 Brassica napus HOM05D005003 ORTHO05D006220 2.7e-29 132.5 147 46.9
BraA09t38740Z Brassica rapa HOM05D005003 ORTHO05D006220 3.6e-29 132.1 147 46.9
unitig_37.g12957 Utricularia gibba HOM05D005003 ORTHO05D006220 4.6e-29 131.7 146 51.4
Cpa.g.sc36.131 Carica papaya HOM05D005003 ORTHO05D006220 7.9e-29 131.0 128 57.8
EL10Ac1g01213 Beta vulgaris HOM05D005003 ORTHO05D006220 2.3e-28 129.4 127 58.3
COL.COLO4_16399 Corchorus olitorius HOM05D005003 ORTHO05D006220 3.0e-28 129.0 157 50.3
TAR625G1506 Trochodendron aralioides HOM05D005003 ORTHO05D006220 3.0e-28 129.0 153 49.0
MBI02_g35765_MAGBIO Magnolia biondii HOM05D005003 ORTHO05D006220 8.8e-28 127.5 137 53.3
CANSAT25G3351 Cannabis sativa HOM05D005003 ORTHO05D006220 1.1e-27 127.1 144 49.3
Manes.02G152700 Manihot esculenta HOM05D005003 ORTHO05D006220 1.1e-27 127.1 154 48.7
TWI56G0498 Tripterygium wilfordii HOM05D005003 ORTHO05D006220 2.6e-27 125.9 118 58.5
Prupe.1G517000 Prunus persica HOM05D005003 ORTHO05D006220 3.3e-27 125.6 142 50.0
Gohir.D05G229066 Gossypium hirsutum HOM05D005003 ORTHO05D006220 4.4e-27 125.2 126 57.9
Gorai.009G237000 Gossypium raimondii HOM05D005003 ORTHO05D006220 4.4e-27 125.2 126 57.9
Potri.002G096500 Populus trichocarpa HOM05D005003 ORTHO05D006220 4.4e-27 125.2 112 60.7
arahy.Tifrunner.gnm1.ann1.DW6FDI Arachis hypogaea HOM05D005003 ORTHO05D006220 9.7e-27 124.0 122 53.3
THA.LOC104816746 Tarenaya hassleriana HOM05D005003 ORTHO05D006220 9.7e-27 124.0 126 55.6
Hund26962 Selenicereus undatus HOM05D005003 ORTHO05D006220 1.3e-26 123.6 146 52.1
Sc01g0000450 Simmondsia chinensis HOM05D005003 ORTHO05D006220 1.3e-26 123.6 139 54.7
Thhalv10001817m.g Eutrema salsugineum HOM05D005003 ORTHO05D006220 1.7e-26 123.2 122 54.1
arahy.Tifrunner.gnm1.ann1.T3BG7X Arachis hypogaea HOM05D005003 ORTHO05D006220 2.2e-26 122.9 122 52.5
Sabra02G0076000 Salix brachista HOM05D005003 ORTHO05D006220 2.2e-26 122.9 113 60.2
C06p11460 Brassica napus HOM05D005003 ORTHO05D006220 2.8e-26 122.5 127 50.4
Aqoxy6G00783 Aquilegia oxysepala HOM05D005003 ORTHO05D006220 3.7e-26 122.1 148 46.6
Manes.18G067500 Manihot esculenta HOM05D005003 ORTHO05D006220 3.7e-26 122.1 127 53.5
Sed0012063 Sechium edule HOM05D005003 ORTHO05D006220 4.8e-26 121.7 142 50.0
Ah.05g169960 Amaranthus hybridus HOM05D005003 ORTHO05D006220 6.3e-26 121.3 141 51.8
PSO210G4886 Papaver somniferum HOM05D005003 ORTHO05D006220 6.3e-26 121.3 108 59.3
AUR62038523 Chenopodium quinoa HOM05D005003 ORTHO05D006220 8.2e-26 120.9 150 48.7
PSO447G0231 Papaver somniferum HOM05D005003 ORTHO05D006220 8.2e-26 120.9 108 59.3
Sp1g29750 Schrenkiella parvula HOM05D005003 ORTHO05D006220 8.2e-26 120.9 127 52.8
unitig_37.g12958 Utricularia gibba HOM05D005003 ORTHO05D006220 1.1e-25 120.6 146 49.3
AT1G34630 Arabidopsis thaliana HOM05D005003 ORTHO05D006220 1.4e-25 120.2 123 54.5
AUR62027758 Chenopodium quinoa HOM05D005003 ORTHO05D006220 1.4e-25 120.2 123 54.5
BcaC08g43771 Brassica carinata HOM05D005003 ORTHO05D006220 1.8e-25 119.8 126 50.0
Gohir.A05G226300 Gossypium hirsutum HOM05D005003 ORTHO05D006220 2.4e-25 119.4 126 56.3
MELO3C011025.2 Cucumis melo HOM05D005003 ORTHO05D006220 3.1e-25 119.0 137 48.2
MD08G1182800 Malus domestica HOM05D005003 ORTHO05D006220 3.1e-25 119.0 126 53.2
BcaC05g27758 Brassica carinata HOM05D005003 ORTHO05D006220 5.3e-25 118.2 122 51.6
C05p37520 Brassica napus HOM05D005003 ORTHO05D006220 5.3e-25 118.2 122 51.6
Carub.0001s3263 Capsella rubella HOM05D005003 ORTHO05D006220 9.1e-25 117.5 142 48.6
Lalb_Chr08g0232881 Lupinus albus HOM05D005003 ORTHO05D006220 9.1e-25 117.5 110 57.3
Lj6g0010535 Lotus japonicus HOM05D005003 ORTHO05D006220 2.0e-24 116.3 92 63.0
RcHm_v2.0_Chr3g0470741 Rosa chinensis HOM05D005003 ORTHO05D006220 2.6e-24 115.9 141 46.8
AL1G49100 Arabidopsis lyrata HOM05D005003 ORTHO05D006220 5.9e-24 114.8 123 52.8
BcaB03g13676 Brassica carinata HOM05D005003 ORTHO05D006220 1.3e-23 113.6 118 51.7
Gohir.A06G035800 Gossypium hirsutum HOM05D005003 ORTHO05D006220 1.3e-23 113.6 126 54.0
Gohir.D06G036300 Gossypium hirsutum HOM05D005003 ORTHO05D006220 1.7e-23 113.2 155 47.7
Gorai.010G040300 Gossypium raimondii HOM05D005003 ORTHO05D006220 2.9e-23 112.5 155 47.1
BcaB07g33109 Brassica carinata HOM05D005003 ORTHO05D006220 6.5e-23 111.3 93 57.0
A05p23910 Brassica napus HOM05D005003 ORTHO05D006220 6.5e-23 111.3 126 50.8
Ca_02288_v3 Cicer arietinum L. HOM05D005003 ORTHO05D006220 8.5e-23 110.9 111 52.3
ClCG08G011090 Citrullus lanatus HOM05D005003 ORTHO05D006220 8.5e-23 110.9 125 48.8
TPR.G20790 Trifolium pratense HOM05D005003 ORTHO05D006220 8.5e-23 110.9 101 59.4
CsaV3_2G029670 Cucumis sativus L. HOM05D005003 ORTHO05D006220 1.1e-22 110.5 137 46.0
CARHR033930 Cardamine hirsuta HOM05D005003 ORTHO05D006220 4.2e-22 108.6 95 56.8
BolC6t36281H Brassica oleracea HOM05D005003 ORTHO05D006220 5.5e-22 108.2 121 49.6
Os03g0190900 Oryza sativa ssp. japonica HOM05D005003 ORTHO05D006220 3.6e-21 105.5 88 58.0
Psat1g137840 Pisum sativum HOM05D005003 ORTHO05D006220 3.6e-21 105.5 117 50.4
Zm00001eb006880 Zea mays HOM05D005003 ORTHO05D006220 7.9e-21 104.4 88 60.2
Glyma.15G183500 Glycine max HOM05D005003 ORTHO05D006220 1.0e-20 104.0 113 52.2
CDE03G0282 Ceratophyllum demersum HOM05D005003 ORTHO05D006220 1.8e-20 103.2 104 52.9
Hund16905 Selenicereus undatus HOM05D005003 ORTHO05D006220 1.1e-19 100.5 108 51.9
Mapoly0082s0089 Marchantia polymorpha HOM05D005003 ORTHO05D006220 3.3e-19 99.0 88 58.0
Phvul.009G222900 Phaseolus vulgaris HOM05D005003 ORTHO05D006220 5.7e-19 98.2 110 48.2
BolC5t32493H Brassica oleracea HOM05D005003 ORTHO05D006220 1.7e-18 96.7 105 50.5
HPP92_027712 Vanilla planifolia HOM05D005003 ORTHO05D006220 3.7e-18 95.5 103 49.5
Aa31LG6G8500 Aethionema arabicum HOM05D005003 ORTHO05D006220 1.1e-17 94.0 141 39.7
Pp3c21_12240 Physcomitrium patens HOM05D005003 ORTHO05D006220 1.4e-17 93.6 86 54.7
BraA05t21269Z Brassica rapa HOM05D005003 ORTHO05D006220 2.0e-16 89.7 109 49.5
Actinidia10323 Actinidia chinensis HOM05D005003 ORTHO05D006220 1.5e-14 83.6 48 81.2
Nitab4.5_0000232g0240 Nicotiana tabacum HOM05D005003 ORTHO05D006220 3.2e-14 82.4 47 80.9
SMO367G0178 Selaginella moellendorffii HOM05D005003 ORTHO05D006220 1.4e-12 77.0 86 48.8
VMungo1309G2656 Vigna mungo HOM05D005003 ORTHO05D006220 4.0e-12 75.5 116 38.8
AagrBONN_evm.TU.Sc2ySwM_368.3429 Anthoceros agrestis HOM05D005003 ORTHO05D006220 1.3e-10 70.5 84 44.0
SEGI_39253 Sequoiadendron giganteum HOM05D005003 ORTHO05D006220 1.7e-10 70.1 135 37.0
ATR0782G104 Amborella trichopoda HOM05D005003 ORTHO05D006220 6.3e-10 68.2 100 42.0
ECA232G1818 Erigeron canadensis HOM05D005003 ORTHO05D006220 3.5e-08 62.4 42 64.3
Gohir.A02G076300 Gossypium hirsutum HOM05D005003 ORTHO05D006220 3.8e-07 58.9 33 78.8
MD15G1368900 Malus domestica HOM05D005003 ORTHO05D006220 8.5e-07 57.8 99 42.4
MBI19_g01918_MAGBIO Magnolia biondii HOM05D007350 ORTHO05D009323 2.5e-06 56.2 44 59.1


User provided reference genes

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