Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g06730 Coffea canephora HOM05D006385 ORTHO05D007948 5.5e-27 123.6 66 100.0
Potri.005G161900 Populus trichocarpa HOM05D006385 ORTHO05D007948 9.5e-11 69.7 37 94.6
Atru.chr13.1121 Acer truncatum HOM05D006385 ORTHO05D007948 1.6e-10 68.9 37 94.6
CSS0028326 Camellia sinensis var. sinensis HOM05D006385 ORTHO05D007948 1.6e-10 68.9 37 91.9
CSS0032215 Camellia sinensis var. sinensis HOM05D006385 ORTHO05D007948 1.6e-10 68.9 37 91.9
QL02p002481 Quercus lobata HOM05D006385 ORTHO05D007948 1.6e-10 68.9 36 91.7
QL02p002520 Quercus lobata HOM05D006385 ORTHO05D007948 1.6e-10 68.9 36 91.7
Hund16889 Selenicereus undatus HOM05D006385 ORTHO05D007948 1.6e-10 68.9 37 94.6
AUR62018967 Chenopodium quinoa HOM05D006385 ORTHO05D007948 2.1e-10 68.6 37 94.6
AUR62027809 Chenopodium quinoa HOM05D006385 ORTHO05D007948 2.1e-10 68.6 37 94.6
Duzib093G1818 Durio zibethinus HOM05D006385 ORTHO05D007948 2.1e-10 68.6 37 94.6
Gohir.A06G033800 Gossypium hirsutum HOM05D006385 ORTHO05D007948 2.1e-10 68.6 37 94.6
Gohir.D06G034700 Gossypium hirsutum HOM05D006385 ORTHO05D007948 2.1e-10 68.6 37 94.6
Gorai.010G038200 Gossypium raimondii HOM05D006385 ORTHO05D007948 2.1e-10 68.6 37 94.6
Peaxi162Scf00030g02222 Petunia axillaris HOM05D006385 ORTHO05D007948 2.1e-10 68.6 37 91.9
Sabra05G0122400 Salix brachista HOM05D000076 ORTHO05D007948 2.1e-10 68.6 37 94.6
Thecc.08G102700 Theobroma cacao HOM05D006385 ORTHO05D007948 2.1e-10 68.6 37 94.6
ClCG11G014260 Citrullus lanatus HOM05D006385 ORTHO05D007948 2.8e-10 68.2 37 89.2
vmacro04711 Vaccinium macrocarpon HOM05D006385 ORTHO05D007948 2.8e-10 68.2 37 89.2
CiPaw.16G033200 Carya illinoinensis HOM05D006385 ORTHO05D007948 4.7e-10 67.4 37 89.2
Ciclev10001685m.g Citrus clementina HOM05D006385 ORTHO05D007948 4.7e-10 67.4 37 91.9
COL.COLO4_12014 Corchorus olitorius HOM05D006385 ORTHO05D007948 4.7e-10 67.4 37 91.9
PGR042G2954 Punica granatum HOM05D006385 ORTHO05D007948 4.7e-10 67.4 37 89.2
HPP92_021090 Vanilla planifolia HOM05D006385 ORTHO05D007948 4.7e-10 67.4 37 91.9
Nn3g19220 Nelumbo nucifera HOM05D006385 ORTHO05D007948 6.1e-10 67.0 37 89.2
CsaV3_3G047650 Cucumis sativus L. HOM05D006385 ORTHO05D007948 8.0e-10 66.6 37 86.5
Manes.18G064300 Manihot esculenta HOM05D006385 ORTHO05D007948 8.0e-10 66.6 37 89.2
SalBow7G0771 Salvia bowleyana HOM05D006385 ORTHO05D007948 8.0e-10 66.6 37 86.5
TWI56G0191 Tripterygium wilfordii HOM05D006385 ORTHO05D007948 8.0e-10 66.6 37 91.9
MSTRG.24988 Avicennia marina HOM05D006385 ORTHO05D007948 1.0e-09 66.2 37 86.5
Dinv44802 Davidia involucrata HOM05D006385 ORTHO05D007948 1.0e-09 66.2 36 88.9
Hma1.2p1_0593F.1_g185660 Hydrangea macrophylla HOM05D006385 ORTHO05D007948 1.0e-09 66.2 37 86.5
FvH4_5g36620 Fragaria vesca HOM05D006385 ORTHO05D007948 1.4e-09 65.9 37 86.5
FAN04G2124 Fragaria x ananassa HOM05D006385 ORTHO05D007948 1.4e-09 65.9 37 86.5
FAN04G2677 Fragaria x ananassa HOM05D006385 ORTHO05D007948 1.4e-09 65.9 37 86.5
FAN08G3484 Fragaria x ananassa HOM05D000076 ORTHO05D002730 1.4e-09 65.9 37 86.5
Prupe.1G522500 Prunus persica HOM05D006385 ORTHO05D007948 1.4e-09 65.9 37 86.5
RcHm_v2.0_Chr7g0242391 Rosa chinensis HOM05D006385 ORTHO05D007948 1.4e-09 65.9 37 86.5
RcHm_v2.0_Chr7g0242491 Rosa chinensis HOM05D006385 ORTHO05D007948 1.4e-09 65.9 37 86.5
Aqoxy3G02613 Aquilegia oxysepala HOM05D006385 ORTHO05D007948 1.8e-09 65.5 37 86.5
CDE11G0329 Ceratophyllum demersum HOM05D006385 ORTHO05D007948 1.8e-09 65.5 37 89.2
Eucgr.F00373 Eucalyptus grandis HOM05D006385 ORTHO05D007948 1.8e-09 65.5 37 86.5
MD15G1373900 Malus domestica HOM05D006385 ORTHO05D007948 1.8e-09 65.5 37 83.8
Os04g0602100 Oryza sativa ssp. japonica HOM05D006385 ORTHO05D007948 1.8e-09 65.5 37 89.2
GSVIVG01009079001 Vitis vinifera HOM05D006385 ORTHO05D007948 1.8e-09 65.5 37 86.5
Zm00001eb071800 Zea mays HOM05D006385 ORTHO05D007948 1.8e-09 65.5 37 89.2
Nitab4.5_0000786g0090 Nicotiana tabacum HOM05D006385 ORTHO05D007948 2.3e-09 65.1 37 86.5
Nitab4.5_0010488g0040 Nicotiana tabacum HOM05D006385 ORTHO05D007948 2.3e-09 65.1 37 86.5
EL10Ac1g01150 Beta vulgaris HOM05D006385 ORTHO05D007948 3.1e-09 64.7 37 89.2
CSS0041418 Camellia sinensis var. sinensis HOM05D006385 ORTHO05D007948 3.1e-09 64.7 37 83.8
Rhsim07G0205000 Rhododendron simsii HOM05D006385 ORTHO05D007948 3.1e-09 64.7 37 83.8
BcaB01g02829 Brassica carinata HOM05D006385 ORTHO05D007948 4.0e-09 64.3 37 86.5
BcaC01g04743 Brassica carinata HOM05D006385 ORTHO05D007948 4.0e-09 64.3 37 86.5
A03p28350 Brassica napus HOM05D006385 ORTHO05D007948 4.0e-09 64.3 37 86.5
C03p34260 Brassica napus HOM05D006385 ORTHO05D007948 4.0e-09 64.3 37 86.5
BolC3t15735H Brassica oleracea HOM05D006385 ORTHO05D007948 4.0e-09 64.3 37 86.5
Migut.C00083 Erythranthe guttata HOM05D006385 ORTHO05D007948 4.0e-09 64.3 37 83.8
Thhalv10028739m.g Eutrema salsugineum HOM05D006385 ORTHO05D007948 4.0e-09 64.3 37 86.5
Sp6g08630 Schrenkiella parvula HOM05D006385 ORTHO05D007948 4.0e-09 64.3 37 86.5
Sed0018010 Sechium edule HOM05D006385 ORTHO05D007948 4.0e-09 64.3 37 83.8
Ah.05g169700 Amaranthus hybridus HOM05D006385 ORTHO05D007948 5.2e-09 63.9 37 86.5
ATR0829G184 Amborella trichopoda HOM05D006385 ORTHO05D007948 5.2e-09 63.9 37 83.8
CAN.G857.10 Capsicum annuum HOM05D006385 ORTHO05D007948 5.2e-09 63.9 37 83.8
Sc23g0000390 Simmondsia chinensis HOM05D006385 ORTHO05D007948 5.2e-09 63.9 37 83.8
Aa31LG9G14680 Aethionema arabicum HOM05D006385 ORTHO05D007948 6.8e-09 63.5 37 83.8
TAR629G0260 Trochodendron aralioides HOM05D006385 ORTHO05D007948 1.2e-08 62.8 37 81.1
BraA03t12039Z Brassica rapa HOM05D006385 ORTHO05D007948 1.5e-08 62.4 37 83.8
Actinidia33123 Actinidia chinensis HOM05D006385 ORTHO05D007948 2.0e-08 62.0 37 81.1
Actinidia37405 Actinidia chinensis HOM05D006385 ORTHO05D007948 2.0e-08 62.0 37 81.1
PSO063G4930 Papaver somniferum HOM05D006385 ORTHO05D007948 2.0e-08 62.0 37 78.4
PSO782G1429 Papaver somniferum HOM05D006385 ORTHO05D007948 2.0e-08 62.0 37 78.4
Glyma.02G209000 Glycine max HOM05D006385 ORTHO05D007948 2.6e-08 61.6 37 81.1
Glyma.14G177200 Glycine max HOM05D006385 ORTHO05D007948 2.6e-08 61.6 37 81.1
Phvul.008G176700 Phaseolus vulgaris HOM05D006385 ORTHO05D007948 2.6e-08 61.6 37 81.1
Cfa017889 Carpinus fangiana HOM05D006385 ORTHO05D007948 3.4e-08 61.2 37 78.4
DCAR_012886 Daucus carota HOM05D006385 ORTHO05D007948 3.4e-08 61.2 37 78.4
VMungo0647G2510 Vigna mungo HOM05D006385 ORTHO05D007948 3.4e-08 61.2 37 81.1
AL6G41510 Arabidopsis lyrata HOM05D006385 ORTHO05D007948 4.4e-08 60.8 37 81.1
AT4G09010 Arabidopsis thaliana HOM05D006385 ORTHO05D007948 4.4e-08 60.8 37 81.1
Carub.0006s2759 Capsella rubella HOM05D006385 ORTHO05D007948 4.4e-08 60.8 37 81.1
Ca_05312_v3 Cicer arietinum L. HOM05D006385 ORTHO05D007948 4.4e-08 60.8 36 80.6
Solyc04g074640.4 Solanum lycopersicum HOM05D006385 ORTHO05D007948 4.4e-08 60.8 37 81.1
Sopen04g029620 Solanum pennellii HOM05D006385 ORTHO05D007948 4.4e-08 60.8 37 81.1
PGSC0003DMG400030834 Solanum tuberosum HOM05D006385 ORTHO05D007948 4.4e-08 60.8 37 81.1
CARHR260020 Cardamine hirsuta HOM05D006385 ORTHO05D007948 5.8e-08 60.5 37 78.4
ECA247G1006 Erigeron canadensis HOM05D006385 ORTHO05D007948 5.8e-08 60.5 37 81.1
Medtr5g064610 Medicago truncatula HOM05D006385 ORTHO05D007948 5.8e-08 60.5 37 78.4
CANSAT25G3491 Cannabis sativa HOM05D006385 ORTHO05D007948 9.8e-08 59.7 37 75.7
THA.LOC104813110 Tarenaya hassleriana HOM05D006385 ORTHO05D007948 9.8e-08 59.7 37 75.7
Haze_18272 Corylus avellana HOM05D006385 ORTHO05D007948 1.7e-07 58.9 37 75.7
Haze_18276 Corylus avellana HOM05D006385 ORTHO05D007948 1.7e-07 58.9 37 75.7
arahy.Tifrunner.gnm1.ann1.5I6DN4 Arachis hypogaea HOM05D006385 ORTHO05D007948 2.2e-07 58.5 37 78.4
arahy.Tifrunner.gnm1.ann1.A6MVZL Arachis hypogaea HOM05D006385 ORTHO05D007948 2.2e-07 58.5 37 78.4
Lj4A97T74 Lonicera japonica HOM05D006385 ORTHO05D007948 2.2e-07 58.5 37 78.4
Lalb_Chr17g0344281 Lupinus albus HOM05D006385 ORTHO05D007948 2.2e-07 58.5 37 78.4
Lj1g0021451 Lotus japonicus HOM05D006385 ORTHO05D007948 2.9e-07 58.2 37 75.7
TPR.G31376 Trifolium pratense HOM05D006385 ORTHO05D007948 4.9e-07 57.4 37 75.7
HanXRQChr05g0149631 Helianthus annuus HOM05D006385 ORTHO05D007948 6.4e-07 57.0 37 75.7
Lsat_1_v5_gn_1_3240 Lactuca sativa HOM05D006385 ORTHO05D007948 3.2e-06 54.7 37 73.0
unitig_578.g16554 Utricularia gibba HOM05D006385 ORTHO05D007948 9.2e-06 53.1 28 92.9


User provided reference genes

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