Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1981.1 1004 100.0
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1510.0 1008 76.9
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1507.7 1007 75.7
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1500.7 1010 74.8
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1498.8 1007 76.5
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1495.3 1011 74.8
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1488.4 1004 74.9
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1487.2 1014 75.3
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1485.7 1008 75.1
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1483.4 1014 75.7
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1482.6 1012 75.0
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1480.7 1007 74.8
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1480.3 1012 74.5
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1478.4 1012 73.7
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1477.6 1025 73.3
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1477.6 1008 74.7
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1477.6 1008 74.9
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1477.2 1007 74.9
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1475.7 1013 74.8
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1475.3 1005 75.0
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1473.8 1012 73.6
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1470.3 1004 74.4
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1468.8 1012 73.5
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1463.7 1006 74.0
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1463.0 1039 72.9
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1461.0 1009 73.0
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1460.7 1005 72.9
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1459.9 1006 73.1
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1459.1 1006 73.1
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1458.7 1005 74.7
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1454.9 1023 72.5
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1451.4 1015 72.6
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1448.0 1011 72.8
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1447.2 1011 72.5
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1447.2 1001 72.9
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1445.6 1030 71.2
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1443.7 1011 72.6
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1443.3 980 75.4
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1442.6 1013 72.3
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1442.2 1015 72.5
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1440.2 1011 72.5
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1439.5 1010 72.0
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1439.5 1041 70.4
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1437.9 1023 71.3
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1437.6 1012 71.3
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1437.2 1030 70.7
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1435.2 1013 72.9
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1431.8 963 75.0
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1431.0 1015 72.2
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1426.8 1033 70.7
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1425.6 1018 71.3
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1423.3 1031 71.2
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1423.3 1007 72.9
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1421.4 1018 71.2
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1420.2 1018 71.1
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1408.7 1009 71.5
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1408.7 930 78.5
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1406.3 1060 68.6
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1405.6 1012 71.2
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1404.8 1086 68.4
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1402.5 1011 70.6
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1394.4 1003 71.2
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1394.0 1011 70.9
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1393.6 1007 70.6
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1392.9 973 72.8
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1392.1 1005 70.2
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1390.6 978 73.1
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1389.4 1032 69.8
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1388.2 1015 70.4
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1384.8 1005 70.2
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1384.0 1002 70.2
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1383.6 1002 70.2
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1383.6 1002 70.2
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1383.2 1002 70.2
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1381.7 1006 71.9
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1381.3 1002 70.1
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1380.5 1016 69.6
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1379.0 1007 69.9
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1377.5 1013 70.1
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1365.5 981 72.4
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1365.5 1010 70.3
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1346.3 1020 67.1
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1343.6 1016 67.5
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1330.9 1018 66.8
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1330.5 1109 63.3
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1325.1 1009 68.6
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1322.8 1017 66.7
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1317.8 1017 66.9
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1312.0 967 70.8
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1306.2 1010 67.8
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1303.5 1014 65.9
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1303.1 978 68.9
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1301.6 1003 67.0
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1295.8 1006 66.8
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1280.0 1042 63.7
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1279.2 1002 66.8
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1279.2 1030 64.6
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1278.5 1007 66.3
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1268.1 1029 64.5
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1267.3 1010 67.5
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1258.8 940 69.6
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1258.4 1016 65.1
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1254.6 1009 65.1
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1231.9 1146 57.7
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1229.2 863 75.0
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1223.4 1031 62.5
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1218.4 1180 56.2
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1205.3 1019 63.0
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1205.3 1043 61.6
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1201.0 1002 61.8
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1195.6 1008 60.2
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1195.3 921 67.9
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1186.8 898 68.7
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1185.2 1014 61.6
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1177.2 982 65.6
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1172.1 1007 59.5
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1147.9 1012 60.5
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1098.6 935 60.7
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1082.4 864 66.2
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 7.0e-307 1057.4 809 69.2
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 1.9e-296 1022.7 949 58.7
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 9.9e-277 957.2 869 58.5
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 6.2e-271 937.9 1037 49.8
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.1e-270 937.2 1041 50.2
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.6e-269 932.6 790 64.6
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 7.1e-259 897.9 629 75.0
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.7e-252 876.7 978 48.9
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 4.5e-245 852.0 693 66.5
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 3.1e-238 829.3 1011 46.1
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.7e-236 823.5 1018 46.0
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 2.2e-236 823.2 620 71.0
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 9.7e-232 807.7 642 67.3
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 9.7e-224 781.2 928 44.4
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 4.8e-223 778.9 1231 40.3
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 2.2e-183 647.1 391 80.8
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.4e-177 627.9 360 84.2
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 7.6e-160 568.9 425 67.1
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 4.2e-150 536.6 472 63.6
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-149 535.0 477 62.1
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.7e-149 533.9 570 52.1
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 2.0e-136 491.1 531 52.4
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 4.1e-105 387.1 256 75.4
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 2.9e-103 380.9 237 80.2
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 2.7e-101 374.4 205 82.0
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 4.4e-99 367.1 259 70.7
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 1.7e-87 328.6 239 67.8
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 1.4e-81 308.9 811 29.2
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 1.0e-79 302.8 247 66.0
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 2.9e-74 284.6 162 79.0
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 3.5e-72 277.7 150 84.0
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.7e-58 232.3 238 52.1
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 4.6e-56 224.2 281 50.2
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 1.6e-53 215.7 297 48.1
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 1.6e-48 199.1 985 24.8
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 2.1e-48 198.7 252 50.4
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 4.3e-46 191.0 114 70.2
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.4e-41 176.0 143 61.5
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 4.6e-40 171.0 90 82.2
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 1.3e-37 162.9 198 50.0
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 2.2e-34 152.1 131 63.4
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 3.9e-31 141.4 77 79.2
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 4.3e-30 137.9 135 55.6
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 4.8e-29 134.4 79 70.9
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 1.4e-25 122.9 90 68.9
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 7.4e-22 110.5 96 56.2
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 4.0e-20 104.8 79 67.1
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.1e-16 92.4 102 53.9
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 2.8e-13 82.0 77 54.5
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 2.8e-13 82.0 95 46.3
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 2.8e-13 82.0 95 46.3
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 2.8e-13 82.0 64 54.7
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 3.1e-12 78.6 54 68.5
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 2.6e-11 75.5 73 54.8
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 9.4e-09 67.0 65 52.3
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 9.7e-06 57.0 69 47.8


User provided reference genes

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