Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g06470 Coffea canephora HOM05D006901 ORTHO05D008582 8.0e-83 310.5 165 100.0
Dinv02470 Davidia involucrata HOM05D006901 ORTHO05D008582 1.9e-47 193.0 165 65.5
Sopen04g028100 Solanum pennellii HOM05D006901 ORTHO05D008582 1.9e-47 193.0 165 67.9
Solyc04g072038.1 Solanum lycopersicum HOM05D006901 ORTHO05D008582 1.2e-46 190.3 165 67.9
PGSC0003DMG400025056 Solanum tuberosum HOM05D006901 ORTHO05D008582 1.7e-45 186.4 165 65.5
Nitab4.5_0003443g0040 Nicotiana tabacum HOM05D006901 ORTHO05D008582 8.6e-45 184.1 165 66.1
CSS0011226 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 4.3e-44 181.8 164 62.8
CSS0025966 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 4.3e-44 181.8 164 62.8
Nitab4.5_0003178g0070 Nicotiana tabacum HOM05D006901 ORTHO05D008582 4.3e-44 181.8 165 64.8
Peaxi162Scf00360g00917 Petunia axillaris HOM05D006901 ORTHO05D008582 6.2e-43 177.9 155 64.5
TAR376G0851 Trochodendron aralioides HOM05D006901 ORTHO05D008582 1.4e-42 176.8 178 57.3
Actinidia17766 Actinidia chinensis HOM05D006901 ORTHO05D008582 2.0e-41 172.9 166 62.0
Hma1.2p1_0678F.1_g202120 Hydrangea macrophylla HOM05D006901 ORTHO05D008582 2.6e-41 172.6 165 60.6
HanXRQChr02g0041271 Helianthus annuus HOM05D006901 ORTHO05D008582 1.7e-40 169.9 166 60.2
CAN.G1183.19 Capsicum annuum HOM05D006901 ORTHO05D008582 2.9e-40 169.1 166 61.4
SalBow7G3034 Salvia bowleyana HOM05D006901 ORTHO05D008582 3.5e-38 162.2 165 59.4
Duzib041G0277 Durio zibethinus HOM05D006901 ORTHO05D008582 3.0e-37 159.1 178 58.4
MD10G1037700 Malus domestica HOM05D006901 ORTHO05D008582 6.6e-37 157.9 173 55.5
Duzib116G0108 Durio zibethinus HOM05D006901 ORTHO05D008582 8.6e-37 157.5 178 54.5
Haze_17820 Corylus avellana HOM05D006901 ORTHO05D008582 1.2e-35 153.7 175 53.1
Gohir.D06G116100 Gossypium hirsutum HOM05D006901 ORTHO05D008582 1.6e-35 153.3 172 54.7
Gorai.010G133900 Gossypium raimondii HOM05D006901 ORTHO05D008582 1.6e-35 153.3 172 54.7
CANSAT25G0969 Cannabis sativa HOM05D006901 ORTHO05D008582 2.1e-35 152.9 180 55.6
CiPaw.16G007900 Carya illinoinensis HOM05D006901 ORTHO05D008582 2.1e-35 152.9 175 53.1
MD05G1035400 Malus domestica HOM05D006901 ORTHO05D008582 2.1e-35 152.9 174 55.7
Lsat_1_v5_gn_1_5120 Lactuca sativa HOM05D006901 ORTHO05D008582 2.8e-35 152.5 166 57.2
Nn6g32189 Nelumbo nucifera HOM05D006901 ORTHO05D008582 3.6e-35 152.1 178 52.2
MSTRG.22112 Avicennia marina HOM05D006901 ORTHO05D008582 4.7e-35 151.8 165 55.2
Prupe.8G043100 Prunus persica HOM05D006901 ORTHO05D008582 1.1e-34 150.6 180 54.4
Nn5g28858 Nelumbo nucifera HOM05D006901 ORTHO05D008582 1.4e-34 150.2 178 53.4
Manes.18G095700 Manihot esculenta HOM05D006901 ORTHO05D008582 2.4e-34 149.4 186 50.5
Actinidia15615 Actinidia chinensis HOM05D006901 ORTHO05D008582 6.9e-34 147.9 146 61.6
Potri.005G198100 Populus trichocarpa HOM05D006901 ORTHO05D008582 6.9e-34 147.9 182 50.5
Rhsim06G0092600 Rhododendron simsii HOM05D006901 ORTHO05D008582 8.9e-34 147.5 171 56.1
Cpa.g.sc26.114 Carica papaya HOM05D006901 ORTHO05D008582 2.0e-33 146.4 183 53.0
SGA_v2.0_scaffold82G26198 Striga asiatica HOM05D006901 ORTHO05D008582 2.6e-33 146.0 165 56.4
Oeu017620.1 Olea europaea HOM05D006901 ORTHO05D008582 9.9e-33 144.1 153 55.6
GSVIVG01013704001 Vitis vinifera HOM05D006901 ORTHO05D008582 9.9e-33 144.1 171 52.6
Thecc.08G162300 Theobroma cacao HOM05D006901 ORTHO05D008582 1.7e-32 143.3 179 53.1
EL10Ac1g01620 Beta vulgaris HOM05D006901 ORTHO05D008582 2.9e-32 142.5 172 51.2
Lalb_Chr21g0305611 Lupinus albus HOM05D006901 ORTHO05D008582 2.9e-32 142.5 172 53.5
Ah.16g108540 Amaranthus hybridus HOM05D006901 ORTHO05D008582 3.8e-32 142.1 169 50.9
SalBow8G2041 Salvia bowleyana HOM05D006901 ORTHO05D008582 3.8e-32 142.1 145 58.6
ECA247G1717 Erigeron canadensis HOM05D006901 ORTHO05D008582 6.4e-32 141.4 91 82.4
QL02p036605 Quercus lobata HOM05D006901 ORTHO05D008582 8.4e-32 141.0 156 57.1
QL02p037117 Quercus lobata HOM05D006901 ORTHO05D008582 8.4e-32 141.0 150 58.7
Atru.chr13.1989 Acer truncatum HOM05D006901 ORTHO05D008582 1.4e-31 140.2 164 57.3
Sc02g0003760 Simmondsia chinensis HOM05D006901 ORTHO05D008582 2.4e-31 139.4 173 51.4
Gohir.A06G111900 Gossypium hirsutum HOM05D006901 ORTHO05D008582 3.2e-31 139.0 156 55.8
Potri.002G063100 Populus trichocarpa HOM05D006901 ORTHO05D008582 4.2e-31 138.7 182 48.4
Sabra05G0150900 Salix brachista HOM05D006901 ORTHO05D008582 4.2e-31 138.7 179 49.2
Ciclev10002626m.g Citrus clementina HOM05D006901 ORTHO05D008582 2.7e-30 136.0 183 54.1
MELO3C019969.2 Cucumis melo HOM05D006901 ORTHO05D008582 1.3e-29 133.7 112 70.5
Lj7E386T0 Lonicera japonica HOM05D006901 ORTHO05D008582 1.3e-29 133.7 91 80.2
PGR042G3646 Punica granatum HOM05D006901 ORTHO05D008582 1.3e-29 133.7 181 49.7
unitig_32.g11111 Utricularia gibba HOM05D006901 ORTHO05D008582 1.3e-29 133.7 163 52.8
FvH4_2g12890 Fragaria vesca HOM05D006901 ORTHO05D008582 1.7e-29 133.3 166 54.8
FAN24G1802 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.7e-29 133.3 166 54.8
PGR102G0180 Punica granatum HOM05D006901 ORTHO05D008582 1.7e-29 133.3 184 48.9
RcHm_v2.0_Chr6g0273991 Rosa chinensis HOM05D006901 ORTHO05D008582 1.7e-29 133.3 165 53.3
Duzib093G0981 Durio zibethinus HOM05D006901 ORTHO05D008582 2.3e-29 132.9 171 50.9
Phvul.007G084500 Phaseolus vulgaris HOM05D006901 ORTHO05D008582 2.3e-29 132.9 169 53.8
ClCG08G007260 Citrullus lanatus HOM05D006901 ORTHO05D008582 3.9e-29 132.1 105 71.4
Eucgr.F02679 Eucalyptus grandis HOM05D006901 ORTHO05D008582 3.9e-29 132.1 86 80.2
TWI60G0595 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 3.9e-29 132.1 100 68.0
EL10Ac4g07716 Beta vulgaris HOM05D006901 ORTHO05D008582 5.1e-29 131.7 160 50.0
FAN27G3188 Fragaria x ananassa HOM05D006901 ORTHO05D008582 5.1e-29 131.7 166 54.8
THA.LOC104810483 Tarenaya hassleriana HOM05D006901 ORTHO05D008582 5.1e-29 131.7 173 51.4
TWI34G1320 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 6.6e-29 131.3 86 79.1
FAN15G3138 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.1e-28 130.6 166 54.2
FAN20G0005 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.1e-28 130.6 166 54.2
EL10Ac1g01617 Beta vulgaris HOM05D006901 ORTHO05D008582 1.9e-28 129.8 160 49.4
CSS0012150 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.9e-28 129.8 165 48.5
Glyma.10G220600 Glycine max HOM05D006901 ORTHO05D008582 1.9e-28 129.8 83 81.9
Glyma.20G171000 Glycine max HOM05D006901 ORTHO05D008582 9.6e-28 127.5 172 50.6
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 1.6e-27 126.7 182 46.7
PSO675G2506 Papaver somniferum HOM05D006901 ORTHO05D008582 2.1e-27 126.3 169 49.1
arahy.Tifrunner.gnm1.ann1.YZ7MCJ Arachis hypogaea HOM05D006901 ORTHO05D008582 2.8e-27 125.9 154 50.0
Medtr1g097570 Medicago truncatula HOM05D006901 ORTHO05D008582 2.8e-27 125.9 167 50.3
CsaV3_6G004930 Cucumis sativus L. HOM05D006901 ORTHO05D008582 6.2e-27 124.8 171 51.5
PSO541G2877 Papaver somniferum HOM05D006901 ORTHO05D008582 6.2e-27 124.8 169 49.1
Sed0007149 Sechium edule HOM05D006901 ORTHO05D008582 6.2e-27 124.8 81 80.2
arahy.Tifrunner.gnm1.ann1.96Y3Q8 Arachis hypogaea HOM05D006901 ORTHO05D008582 8.1e-27 124.4 154 50.0
TPR.G792 Trifolium pratense HOM05D006901 ORTHO05D008582 1.1e-26 124.0 169 50.3
AL2G31300 Arabidopsis lyrata HOM05D006901 ORTHO05D008582 1.4e-26 123.6 180 48.9
Aa31LG4G8920 Aethionema arabicum HOM05D006901 ORTHO05D008582 1.8e-26 123.2 129 59.7
Lj5g0019877 Lotus japonicus HOM05D006901 ORTHO05D008582 1.8e-26 123.2 167 48.5
ATR1120G022 Amborella trichopoda HOM05D006901 ORTHO05D008582 4.0e-26 122.1 160 48.8
Carub.0002s1849 Capsella rubella HOM05D006901 ORTHO05D008582 4.0e-26 122.1 86 74.4
Ca_10653_v3 Cicer arietinum L. HOM05D006901 ORTHO05D008582 5.3e-26 121.7 169 50.3
HPP92_002808 Vanilla planifolia HOM05D006901 ORTHO05D008582 5.3e-26 121.7 86 73.3
HPP92_002865 Vanilla planifolia HOM05D006901 ORTHO05D008582 5.3e-26 121.7 86 73.3
SEGI_14424 Sequoiadendron giganteum HOM05D006901 ORTHO05D008582 6.9e-26 121.3 106 62.3
AT1G71730 Arabidopsis thaliana HOM05D006901 ORTHO05D008582 1.5e-25 120.2 86 73.3
CARHR291060 Cardamine hirsuta HOM05D006901 ORTHO05D008582 1.5e-25 120.2 85 70.6
Psat6g189960 Pisum sativum HOM05D006901 ORTHO05D008582 1.5e-25 120.2 168 50.6
VMungo0720G0575 Vigna mungo HOM05D006901 ORTHO05D008582 2.6e-25 119.4 153 54.2
A07p37880 Brassica napus HOM05D006901 ORTHO05D008582 4.5e-25 118.6 117 57.3
BraA07t31353Z Brassica rapa HOM05D006901 ORTHO05D008582 4.5e-25 118.6 117 57.3
Thhalv10019220m.g Eutrema salsugineum HOM05D006901 ORTHO05D008582 1.3e-24 117.1 177 47.5
Sp5g26760 Schrenkiella parvula HOM05D006901 ORTHO05D008582 1.3e-24 117.1 184 46.2
BcaC08g46599 Brassica carinata HOM05D006901 ORTHO05D008582 2.2e-24 116.3 165 46.7
C06p45780 Brassica napus HOM05D006901 ORTHO05D008582 2.2e-24 116.3 165 46.7
BolC6t39630H Brassica oleracea HOM05D006901 ORTHO05D008582 2.2e-24 116.3 165 46.7
AagrBONN_evm.TU.Sc2ySwM_228.5132 Anthoceros agrestis HOM05D006901 ORTHO05D008582 2.7e-22 109.4 95 65.3
Pp3c17_20520 Physcomitrium patens HOM05D006901 ORTHO05D008582 8.7e-21 104.4 96 58.3
SMO351G0406 Selaginella moellendorffii HOM05D006901 ORTHO05D008582 1.5e-20 103.6 83 67.5
DCAR_001194 Daucus carota HOM05D006901 ORTHO05D008582 2.5e-20 102.8 64 82.8
Lj5g0009364 Lotus japonicus HOM05D006901 ORTHO05D008582 3.3e-20 102.4 167 45.5
CSS0007119 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 4.3e-20 102.1 110 54.5
Os05g0182000 Oryza sativa ssp. japonica HOM05D006901 ORTHO05D008582 7.4e-20 101.3 83 65.1
Zm00001eb346910 Zea mays HOM05D006901 ORTHO05D008582 3.6e-19 99.0 88 61.4
CBR_g54341 Chara braunii HOM05D006901 ORTHO05D008582 8.4e-16 87.8 102 49.0
MCO05G280 Micromonas commoda HOM05D006901 ORTHO05D008582 3.2e-15 85.9 88 53.4
CSS0023453 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.6e-14 83.6 92 53.3
Cre03.g176500 Chlamydomonas reinhardtii HOM05D006901 ORTHO05D008582 2.5e-12 76.3 83 50.6
Ah.08g214420 Amaranthus hybridus HOM05D006901 ORTHO05D008582 3.8e-08 62.4 67 53.7


User provided reference genes

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