Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g06440 Coffea canephora HOM05D007372 ORTHO05D009318 1.2e-97 359.8 174 100.0
Solyc04g072040.1 Solanum lycopersicum HOM05D007372 ORTHO05D009318 8.0e-41 171.0 137 61.3
Dinv02471 Davidia involucrata HOM05D007372 ORTHO05D009318 1.4e-40 170.2 151 57.6
Nitab4.5_0007403g0010 Nicotiana tabacum HOM05D007372 ORTHO05D009318 3.0e-40 169.1 139 62.6
Sopen04g028150 Solanum pennellii HOM05D007372 ORTHO05D009318 6.7e-40 167.9 137 59.9
Potri.002G062800 Populus trichocarpa HOM05D007372 ORTHO05D009318 5.9e-36 154.8 152 57.2
THA.LOC104809747 Tarenaya hassleriana HOM05D007372 ORTHO05D009318 5.9e-36 154.8 177 50.8
Nn5g28866 Nelumbo nucifera HOM05D007372 ORTHO05D009318 3.8e-35 152.1 142 56.3
CAN.G1183.23 Capsicum annuum HOM05D007372 ORTHO05D009318 1.9e-34 149.8 139 58.3
Gohir.A02G062200 Gossypium hirsutum HOM05D007372 ORTHO05D009318 3.2e-34 149.1 146 57.5
Hma1.2p1_0678F.1_g202150 Hydrangea macrophylla HOM05D007372 ORTHO05D009318 5.5e-34 148.3 109 70.6
Gorai.005G076700 Gossypium raimondii HOM05D007372 ORTHO05D009318 1.2e-33 147.1 146 56.8
Gohir.D02G067900 Gossypium hirsutum HOM05D007372 ORTHO05D009318 1.6e-33 146.7 146 56.2
A07p37910 Brassica napus HOM05D007372 ORTHO05D009318 2.7e-33 146.0 154 50.6
Carub.0002s1852 Capsella rubella HOM05D007372 ORTHO05D009318 2.7e-33 146.0 162 50.0
Nitab4.5_0004252g0050 Nicotiana tabacum HOM05D007372 ORTHO05D009318 2.7e-33 146.0 107 68.2
BraA07t31356Z Brassica rapa HOM05D007372 ORTHO05D009318 4.7e-33 145.2 138 55.1
Lsat_1_v5_gn_9_42440 Lactuca sativa HOM05D007372 ORTHO05D009318 4.7e-33 145.2 161 52.8
Actinidia17763 Actinidia chinensis HOM05D007372 ORTHO05D009318 6.1e-33 144.8 170 53.5
AL2G31330 Arabidopsis lyrata HOM05D007372 ORTHO05D009318 6.1e-33 144.8 152 52.6
Duzib093G1977 Durio zibethinus HOM05D007372 ORTHO05D009318 6.1e-33 144.8 182 50.5
Migut.C00154 Erythranthe guttata HOM05D007372 ORTHO05D009318 6.1e-33 144.8 147 55.1
PGR042G0625 Punica granatum HOM05D007372 ORTHO05D009318 1.4e-32 143.7 143 57.3
Eucgr.F02675 Eucalyptus grandis HOM05D007372 ORTHO05D009318 3.0e-32 142.5 135 57.0
AT1G71760 Arabidopsis thaliana HOM05D007372 ORTHO05D009318 5.2e-32 141.7 137 54.7
BcaC08g46602 Brassica carinata HOM05D007372 ORTHO05D009318 8.8e-32 141.0 143 55.2
Sp5g26780 Schrenkiella parvula HOM05D007372 ORTHO05D009318 8.8e-32 141.0 150 55.3
Cpa.g.sc26.120 Carica papaya HOM05D007372 ORTHO05D009318 2.6e-31 139.4 140 52.1
C06p45810 Brassica napus HOM05D007372 ORTHO05D009318 3.4e-31 139.0 142 50.7
Thhalv10019840m.g Eutrema salsugineum HOM05D007372 ORTHO05D009318 3.4e-31 139.0 142 52.8
BolC6t39633H Brassica oleracea HOM05D007372 ORTHO05D009318 9.8e-31 137.5 142 50.7
unitig_46.g18009 Utricularia gibba HOM05D007372 ORTHO05D009318 1.3e-30 137.1 140 51.4
CiPaw.15G011400 Carya illinoinensis HOM05D007372 ORTHO05D009318 1.7e-30 136.7 166 48.8
TAR381G1194 Trochodendron aralioides HOM05D007372 ORTHO05D009318 2.8e-30 136.0 133 57.9
Aa31LG4G8880 Aethionema arabicum HOM05D007372 ORTHO05D009318 3.7e-30 135.6 145 51.7
PSO675G2246 Papaver somniferum HOM05D007372 ORTHO05D009318 3.7e-30 135.6 178 48.3
Cfa018264 Carpinus fangiana HOM05D007372 ORTHO05D009318 8.3e-30 134.4 144 51.4
Manes.02G185100 Manihot esculenta HOM05D007372 ORTHO05D009318 8.3e-30 134.4 140 54.3
Sabra02G0050700 Salix brachista HOM05D007372 ORTHO05D009318 8.3e-30 134.4 140 55.0
Lj2g0008181 Lotus japonicus HOM05D007372 ORTHO05D009318 4.1e-29 132.1 136 52.9
arahy.Tifrunner.gnm1.ann1.1F4W04 Arachis hypogaea HOM05D007372 ORTHO05D009318 7.0e-29 131.3 149 52.3
arahy.Tifrunner.gnm1.ann1.CL5RXG Arachis hypogaea HOM05D007372 ORTHO05D009318 7.0e-29 131.3 149 52.3
TWI60G0690 Tripterygium wilfordii HOM05D007372 ORTHO05D009318 2.7e-28 129.4 133 54.9
CsaV3_6G004890 Cucumis sativus L. HOM05D007372 ORTHO05D009318 3.5e-28 129.0 129 55.0
Glyma.02G077500 Glycine max HOM05D007372 ORTHO05D009318 3.5e-28 129.0 144 50.0
CANSAT25G1084 Cannabis sativa HOM05D007372 ORTHO05D009318 4.5e-28 128.6 169 48.5
PSO541G3596 Papaver somniferum HOM05D007372 ORTHO05D009318 5.9e-28 128.3 143 49.7
Sed0016879 Sechium edule HOM05D007372 ORTHO05D009318 7.7e-28 127.9 180 43.9
ClCG08G007220 Citrullus lanatus HOM05D007372 ORTHO05D009318 1.7e-27 126.7 138 51.4
Prupe.8G043800 Prunus persica HOM05D007372 ORTHO05D009318 1.7e-27 126.7 153 50.3
COL.COLO4_24577 Corchorus olitorius HOM05D007372 ORTHO05D009318 2.9e-27 125.9 130 56.2
Phvul.004G088900 Phaseolus vulgaris HOM05D007372 ORTHO05D009318 5.0e-27 125.2 150 48.0
VMungo0464G0612 Vigna mungo HOM05D007372 ORTHO05D009318 5.0e-27 125.2 172 44.8
Psat0ss32450g0040 Pisum sativum HOM05D007372 ORTHO05D009318 6.5e-27 124.8 149 49.7
Aqoxy6G00438 Aquilegia oxysepala HOM05D007372 ORTHO05D009318 1.9e-26 123.2 135 52.6
AUR62034913 Chenopodium quinoa HOM05D007372 ORTHO05D009318 2.5e-26 122.9 168 45.2
SalBow7G3614 Salvia bowleyana HOM05D007372 ORTHO05D009318 2.5e-26 122.9 133 51.9
vmacro22649 Vaccinium macrocarpon HOM05D007372 ORTHO05D009318 2.5e-26 122.9 124 55.6
TPR.G19684 Trifolium pratense HOM05D007372 ORTHO05D009318 7.2e-26 121.3 145 51.0
QL02p037053 Quercus lobata HOM05D007372 ORTHO05D009318 9.5e-26 120.9 146 46.6
Lalb_Chr19g0129991 Lupinus albus HOM05D007372 ORTHO05D009318 1.2e-25 120.6 144 47.9
MSTRG.969 Avicennia marina HOM05D007372 ORTHO05D009318 1.6e-25 120.2 107 58.9
ECA232G4628 Erigeron canadensis HOM05D007372 ORTHO05D009318 2.1e-25 119.8 143 52.4
Rhsim06G0093000 Rhododendron simsii HOM05D007372 ORTHO05D009318 2.8e-25 119.4 139 54.0
CARHR291030 Cardamine hirsuta HOM05D007372 ORTHO05D009318 8.0e-25 117.9 127 52.0
FvH4_2g12850 Fragaria vesca HOM05D007372 ORTHO05D009318 1.4e-24 117.1 107 58.9
RcHm_v2.0_Chr6g0273891 Rosa chinensis HOM05D007372 ORTHO05D009318 4.0e-24 115.5 105 59.0
TPR.G19681 Trifolium pratense HOM05D007372 ORTHO05D009318 5.2e-24 115.2 151 50.3
SGA_v2.0_scaffold82G26208 Striga asiatica HOM05D007372 ORTHO05D009318 1.2e-23 114.0 139 50.4
MELO3C019965.2 Cucumis melo HOM05D007372 ORTHO05D009318 1.5e-23 113.6 163 44.2
GSVIVG01013700001 Vitis vinifera HOM05D007372 ORTHO05D009318 2.0e-23 113.2 116 56.0
Medtr1191s0010 Medicago truncatula HOM05D007372 ORTHO05D009318 4.4e-23 112.1 115 53.9
HPP92_004582 Vanilla planifolia HOM05D007372 ORTHO05D009318 5.7e-23 111.7 131 45.8
vmacro22532 Vaccinium macrocarpon HOM05D007372 ORTHO05D009318 7.5e-23 111.3 119 52.9
MBI01_g42373_MAGBIO Magnolia biondii HOM05D007372 ORTHO05D009318 1.3e-22 110.5 138 47.1
Psat6g060160 Pisum sativum HOM05D007372 ORTHO05D009318 2.2e-22 109.8 149 47.7
MD05G1035800 Malus domestica HOM05D007372 ORTHO05D009318 2.8e-22 109.4 137 49.6
Sc26g0002770 Simmondsia chinensis HOM05D007372 ORTHO05D009318 2.8e-22 109.4 126 50.0
Os01g0716300 Oryza sativa ssp. japonica HOM05D007372 ORTHO05D009318 1.1e-21 107.5 152 42.8
Zm00001eb361480 Zea mays HOM05D007372 ORTHO05D009318 1.1e-21 107.5 151 43.0
Haze_17824 Corylus avellana HOM05D007372 ORTHO05D009318 1.4e-21 107.1 144 45.8
MBI01_g29001_MAGBIO Magnolia biondii HOM05D007372 ORTHO05D009318 1.4e-21 107.1 138 46.4
EL10Ac1g01626 Beta vulgaris HOM05D007372 ORTHO05D009318 9.2e-21 104.4 147 43.5
Ca_04659_v3 Cicer arietinum L. HOM05D007372 ORTHO05D009318 9.2e-21 104.4 127 50.4
Ciclev10001857m.g Citrus clementina HOM05D007372 ORTHO05D009318 1.6e-20 103.6 69 71.0
Peaxi162Scf00360g00916 Petunia axillaris HOM05D007372 ORTHO05D009318 4.5e-20 102.1 123 52.0
Ah.05g168260 Amaranthus hybridus HOM05D007372 ORTHO05D009318 7.8e-20 101.3 136 48.5
ATR1120G103 Amborella trichopoda HOM05D007372 ORTHO05D009318 1.3e-19 100.5 138 44.9
Hund17499 Selenicereus undatus HOM05D007372 ORTHO05D009318 1.1e-18 97.4 142 47.9
QL02p036533 Quercus lobata HOM05D007372 ORTHO05D009318 1.0e-16 90.9 118 42.4
Medtr0571s0030 Medicago truncatula HOM05D007372 ORTHO05D009318 2.0e-15 86.7 100 48.0
Mapoly0147s0022 Marchantia polymorpha HOM05D007372 ORTHO05D009318 5.8e-15 85.1 139 40.3
HanXRQChr11g0343631 Helianthus annuus HOM05D007372 ORTHO05D009318 1.8e-13 80.1 108 47.2
FAN24G0386 Fragaria x ananassa HOM05D023021 ORTHO05D025344 9.2e-13 77.8 46 80.4
AagrBONN_evm.TU.Sc2ySwM_117.786 Anthoceros agrestis HOM05D007372 ORTHO05D009318 1.6e-12 77.0 137 36.5
Rhsim04G0161000 Rhododendron simsii HOM05D007372 ORTHO05D009318 2.7e-12 76.3 77 55.8
Oeu046069.1 Olea europaea HOM05D007372 ORTHO05D009318 3.5e-12 75.9 101 44.6
Rhsim06G0189600 Rhododendron simsii HOM05D007372 ORTHO05D009318 6.0e-12 75.1 76 53.9
SMO304G0033 Selaginella moellendorffii HOM05D007372 ORTHO05D009318 6.0e-12 75.1 107 39.3
PGSC0003DMG400025053 Solanum tuberosum HOM05D007372 ORTHO05D009318 1.7e-11 73.6 79 46.8


User provided reference genes

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