Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 2.0e-127 459.1 240 100.0
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 2.3e-94 349.4 237 73.0
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.2e-92 343.6 237 71.3
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.6e-92 343.2 237 70.9
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 1.2e-90 337.0 239 66.5
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 9.8e-90 334.0 239 67.8
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 1.7e-89 333.2 236 68.6
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 3.7e-89 332.0 234 68.4
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 8.3e-89 330.9 237 69.2
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 2.4e-88 329.3 237 70.9
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.4e-88 329.3 237 68.8
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 2.4e-88 329.3 237 68.8
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 2.3e-86 322.8 238 67.2
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.5e-85 320.1 237 66.2
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 1.5e-85 320.1 239 63.6
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 2.5e-85 319.3 266 62.0
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 3.3e-85 318.9 238 67.6
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 4.3e-85 318.5 234 67.5
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.6e-84 316.6 240 67.1
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 6.2e-84 314.7 235 66.8
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 6.2e-84 314.7 237 67.9
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 5.2e-83 311.6 235 65.5
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 6.8e-83 311.2 236 64.8
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 8.9e-83 310.8 238 66.8
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 1.5e-82 310.1 238 66.0
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 2.0e-82 309.7 236 66.9
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.6e-82 309.3 238 66.8
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 7.5e-82 307.8 206 74.3
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 1.3e-81 307.0 238 65.5
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 3.7e-81 305.4 236 65.3
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 1.1e-80 303.9 238 65.5
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 2.4e-80 302.8 236 64.8
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 2.4e-80 302.8 236 65.3
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 4.1e-80 302.0 235 66.4
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 4.1e-80 302.0 236 63.6
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 3.5e-79 298.9 235 65.5
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 4.6e-79 298.5 239 63.6
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 4.6e-79 298.5 238 64.7
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 4.6e-79 298.5 239 59.8
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 1.0e-78 297.4 219 68.9
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 1.7e-78 296.6 238 63.4
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 2.3e-78 296.2 229 63.8
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 2.3e-78 296.2 235 61.7
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.0e-78 295.8 236 65.3
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 3.9e-78 295.4 234 62.8
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 2.5e-77 292.7 260 56.5
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 1.6e-76 290.0 234 60.7
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 1.6e-76 290.0 208 67.8
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 4.7e-76 288.5 236 61.0
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 4.7e-76 288.5 234 61.5
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 2.6e-74 282.7 234 60.7
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 6.4e-73 278.1 237 57.8
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 4.1e-72 275.4 197 70.6
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 1.3e-70 270.4 196 68.4
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.7e-70 270.0 207 64.3
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 3.0e-70 269.2 196 66.8
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 6.6e-70 268.1 194 67.5
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 6.6e-70 268.1 240 55.8
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 8.6e-70 267.7 240 55.0
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 3.3e-69 265.8 238 58.0
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 1.2e-68 263.8 198 67.7
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 6.2e-68 261.5 210 64.3
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 3.1e-67 259.2 228 53.9
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 4.0e-67 258.8 225 59.6
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 2.6e-66 256.1 221 56.1
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 1.7e-65 253.4 239 54.4
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 2.9e-65 252.7 239 54.0
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 2.9e-65 252.7 239 54.0
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 3.8e-65 252.3 239 54.4
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 4.9e-65 251.9 238 54.6
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.1e-64 250.8 236 53.4
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 1.9e-64 250.0 238 53.8
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 1.9e-64 250.0 238 53.8
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 1.9e-64 250.0 238 54.6
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 4.1e-64 248.8 239 54.0
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 9.2e-64 247.7 236 53.4
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 9.2e-64 247.7 262 53.4
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.2e-63 247.3 252 50.8
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 1.2e-63 247.3 184 66.3
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 2.1e-63 246.5 239 54.4
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 2.1e-63 246.5 239 53.6
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 2.7e-63 246.1 238 52.5
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 3.5e-63 245.7 238 57.1
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 1.3e-62 243.8 240 53.3
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 2.5e-61 239.6 238 56.7
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 9.6e-61 237.7 294 46.6
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.6e-60 236.9 197 56.9
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 2.0e-58 229.9 233 53.6
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 9.9e-58 227.6 207 57.5
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 2.9e-57 226.1 239 50.6
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 1.1e-56 224.2 235 49.8
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 6.0e-55 218.4 240 47.9
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 7.8e-55 218.0 238 50.0
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 1.0e-54 217.6 179 59.8
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.5e-53 213.8 239 47.7
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 3.3e-53 212.6 236 45.8
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 1.6e-52 210.3 218 52.3
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 9.0e-51 204.5 239 46.0
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.9e-48 196.8 270 44.8
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 4.2e-48 195.7 236 43.6
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 7.1e-48 194.9 195 51.8
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 6.0e-47 191.8 228 43.0
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.6e-44 183.7 235 43.0
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 6.2e-44 181.8 162 56.8
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-43 181.0 237 42.2
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 1.1e-40 171.0 235 44.3
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 1.6e-39 167.2 232 41.8
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-37 161.0 235 39.1
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 3.1e-35 152.9 154 53.9
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 3.4e-34 149.4 116 62.9
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 2.2e-33 146.7 205 41.5
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-32 144.4 236 38.1
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 2.5e-32 143.3 109 61.5
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.2e-31 141.0 183 44.8
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 1.0e-30 137.9 111 62.2
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 1.3e-30 137.5 104 60.6
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 3.9e-30 136.0 237 36.7
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.9e-29 133.7 151 45.7
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 1.9e-29 133.7 205 40.5
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 9.3e-24 114.8 104 51.0
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 4.6e-23 112.5 102 54.9
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 2.2e-20 103.6 106 47.2
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 1.8e-19 100.5 115 48.7
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 3.1e-19 99.8 103 47.6
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 3.1e-19 99.8 125 44.8
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 4.1e-19 99.4 121 46.3
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 9.1e-19 98.2 170 38.8
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 1.5e-18 97.4 110 44.5
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 2.9e-17 93.2 103 42.7
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 5.1e-14 82.4 69 56.5
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 4.4e-13 79.3 220 26.8
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.8e-11 73.9 69 49.3
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 2.4e-11 73.6 112 41.1
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-09 67.8 113 34.5
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 8.5e-09 65.1 103 38.8
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 1.9e-08 63.9 71 50.7
Lsat_1_v5_gn_4_15661 Lactuca sativa HOM05D001315 ORTHO05D004199 3.0e-06 56.6 80 42.5
Lsat_1_v5_gn_5_58841 Lactuca sativa HOM05D001315 ORTHO05D004199 3.0e-06 56.6 80 42.5
Lsat_1_v5_gn_6_15761 Lactuca sativa HOM05D001315 ORTHO05D004199 3.0e-06 56.6 80 42.5
Pp3c18_14820 Physcomitrium patens HOM05D005414 ORTHO05D006844 3.9e-06 56.2 42 59.5
Lsat_1_v5_gn_3_108880 Lactuca sativa HOM05D002370 ORTHO05D022851 6.7e-06 55.5 91 36.3


User provided reference genes

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