Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 1.6e-39 165.6 81 100.0
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 1.0e-22 109.8 81 69.1
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 6.6e-22 107.1 81 70.4
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 9.5e-21 103.2 81 64.2
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 9.5e-21 103.2 81 66.7
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 1.2e-20 102.8 63 79.4
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 1.6e-20 102.4 81 64.2
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 1.6e-20 102.4 81 66.7
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 1.6e-20 102.4 81 65.4
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 2.1e-20 102.1 84 69.0
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 2.1e-20 102.1 83 66.3
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 2.1e-20 102.1 81 65.4
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 2.1e-20 102.1 81 65.4
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 2.8e-20 101.7 81 66.7
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 3.6e-20 101.3 81 64.2
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 3.6e-20 101.3 80 67.5
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 6.2e-20 100.5 81 60.5
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 8.0e-20 100.1 81 64.2
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 1.1e-19 99.8 85 63.5
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 1.1e-19 99.8 79 67.1
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 1.1e-19 99.8 81 65.4
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 1.8e-19 99.0 85 63.5
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 1.8e-19 99.0 81 65.4
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 2.3e-19 98.6 84 65.5
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 2.3e-19 98.6 64 76.6
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 3.1e-19 98.2 81 65.4
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 4.0e-19 97.8 81 64.2
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 1.2e-18 96.3 81 64.2
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 1.5e-18 95.9 81 63.0
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 1.5e-18 95.9 81 64.2
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 1.5e-18 95.9 81 63.0
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 2.6e-18 95.1 81 63.0
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 2.6e-18 95.1 64 73.4
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 2.6e-18 95.1 81 63.0
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 2.6e-18 95.1 82 65.9
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 3.4e-18 94.7 77 67.5
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 3.4e-18 94.7 81 59.3
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 3.4e-18 94.7 82 62.2
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 4.4e-18 94.4 78 65.4
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 4.4e-18 94.4 78 61.5
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 5.8e-18 94.0 81 63.0
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 5.8e-18 94.0 64 71.9
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 5.8e-18 94.0 85 62.4
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 7.5e-18 93.6 81 61.7
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 7.5e-18 93.6 81 60.5
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 9.8e-18 93.2 81 61.7
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 9.8e-18 93.2 81 60.5
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 1.3e-17 92.8 81 59.3
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 1.3e-17 92.8 61 75.4
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 1.3e-17 92.8 85 60.0
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 1.3e-17 92.8 79 64.6
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 1.3e-17 92.8 81 63.0
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 1.7e-17 92.4 82 62.2
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 2.9e-17 91.7 81 61.7
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 3.7e-17 91.3 57 75.4
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 4.9e-17 90.9 85 62.4
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 4.9e-17 90.9 81 58.0
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 4.9e-17 90.9 85 56.5
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 8.3e-17 90.1 78 57.7
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 8.3e-17 90.1 81 55.6
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 1.1e-16 89.7 81 59.3
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 1.1e-16 89.7 101 52.5
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 1.4e-16 89.4 81 59.3
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 1.2e-15 86.3 81 58.0
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 2.0e-15 85.5 83 59.0
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 3.5e-15 84.7 67 64.2
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 1.3e-14 82.8 86 54.7
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 3.0e-14 81.6 79 53.2
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 3.9e-14 81.3 80 56.2
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 5.0e-14 80.9 82 52.4
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 1.5e-13 79.3 81 51.9
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 1.5e-13 79.3 83 53.0
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 2.5e-13 78.6 74 59.5
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 2.5e-13 78.6 78 53.8
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 2.5e-13 78.6 54 66.7
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 3.3e-13 78.2 78 53.8
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 4.3e-13 77.8 78 53.8
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 4.3e-13 77.8 83 54.2
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 7.3e-13 77.0 65 60.0
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 9.5e-13 76.6 55 65.5
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 9.5e-13 76.6 55 65.5
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 9.5e-13 76.6 55 65.5
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 1.2e-12 76.3 62 61.3
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 2.8e-12 75.1 66 56.1
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 3.6e-12 74.7 57 59.6
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 6.2e-12 73.9 65 56.9
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 6.2e-12 73.9 120 45.0
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 5.2e-11 70.9 48 72.9
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 1.5e-10 69.3 122 39.3
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 1.3e-09 66.2 81 48.1
CSS0046153 Camellia sinensis var. sinensis HOM05D007703 ORTHO05D009731 2.4e-08 62.0 34 85.3


User provided reference genes

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