Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 2.1e-120 435.6 212 100.0
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 4.2e-84 315.1 212 72.6
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 7.1e-84 314.3 212 71.7
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 5.1e-82 308.1 212 70.8
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 4.8e-80 301.6 210 69.5
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 2.4e-79 299.3 212 67.9
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 4.0e-79 298.5 212 69.3
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 5.3e-79 298.1 214 69.2
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 2.6e-78 295.8 210 68.6
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 3.4e-78 295.4 212 67.5
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 9.9e-78 293.9 212 69.3
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 4.9e-77 291.6 211 67.8
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 6.4e-77 291.2 211 69.2
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 8.4e-77 290.8 213 67.1
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 4.2e-76 288.5 212 66.5
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 4.2e-76 288.5 211 66.4
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 4.2e-76 288.5 214 66.4
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 7.1e-76 287.7 210 66.7
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 7.1e-76 287.7 212 68.4
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 2.7e-75 285.8 212 67.5
MSTRG.24376 Avicennia marina HOM05D006958 ORTHO05D008814 6.0e-75 284.6 212 67.0
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 7.9e-75 284.3 212 66.0
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 2.3e-74 282.7 216 66.7
TAR376G0445 Trochodendron aralioides HOM05D006958 ORTHO05D008814 2.3e-74 282.7 218 64.7
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 3.9e-74 282.0 210 64.3
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 3.9e-74 282.0 214 66.4
Sopen04g031420 Solanum pennellii HOM05D006958 ORTHO05D008814 8.7e-74 280.8 212 67.5
Solyc04g077820.4 Solanum lycopersicum HOM05D006958 ORTHO05D008814 1.1e-73 280.4 210 67.1
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 1.9e-73 279.6 213 64.3
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 5.6e-73 278.1 212 64.2
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 1.3e-72 276.9 214 64.5
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 1.6e-72 276.6 214 64.0
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 1.6e-72 276.6 250 57.2
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 1.6e-72 276.6 212 65.6
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 3.7e-72 275.4 212 63.2
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 8.1e-72 274.2 212 61.8
Nitab4.5_0002484g0050 Nicotiana tabacum HOM05D006958 ORTHO05D008814 8.1e-72 274.2 210 66.7
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 3.1e-71 272.3 210 66.2
Hund05299 Selenicereus undatus HOM05D006958 ORTHO05D008814 9.0e-71 270.8 216 62.5
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 2.6e-70 269.2 210 62.4
PGR031G1511 Punica granatum HOM05D006958 ORTHO05D008814 2.6e-70 269.2 213 63.8
MD15G1069100 Malus domestica HOM05D006958 ORTHO05D008814 3.4e-70 268.9 213 63.8
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 5.8e-70 268.1 216 63.4
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 1.3e-69 266.9 212 64.2
Nitab4.5_0004654g0020 Nicotiana tabacum HOM05D006958 ORTHO05D008814 1.3e-69 266.9 210 65.2
THA.LOC104816754 Tarenaya hassleriana HOM05D006958 ORTHO05D008814 1.3e-69 266.9 212 62.3
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 2.2e-69 266.2 212 62.3
FAN15G0662 Fragaria x ananassa HOM05D006958 ORTHO05D008814 2.9e-69 265.8 214 63.6
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 3.8e-69 265.4 216 63.9
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 3.8e-69 265.4 212 61.8
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 4.9e-69 265.0 210 61.4
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 1.4e-68 263.5 210 62.9
PGSC0003DMG400010608 Solanum tuberosum HOM05D006958 ORTHO05D008814 1.9e-68 263.1 223 61.4
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 7.1e-68 261.2 212 61.3
ClCG08G016520 Citrullus lanatus HOM05D006958 ORTHO05D008814 1.2e-67 260.4 210 61.4
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 1.0e-66 257.3 219 62.1
CsaV3_2G026090 Cucumis sativus L. HOM05D006958 ORTHO05D008814 1.8e-66 256.5 213 61.5
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 5.1e-66 255.0 212 63.2
FAN20G1263 Fragaria x ananassa HOM05D006958 ORTHO05D008814 8.7e-66 254.2 228 59.2
Sed0002112 Sechium edule HOM05D006958 ORTHO05D008814 8.7e-66 254.2 211 60.7
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 1.5e-65 253.4 223 59.2
Phvul.001G028000 Phaseolus vulgaris HOM05D006958 ORTHO05D008814 4.3e-65 251.9 212 59.4
CARHR283790 Cardamine hirsuta HOM05D006958 ORTHO05D008814 7.4e-65 251.1 212 60.4
AT1G59600 Arabidopsis thaliana HOM05D006958 ORTHO05D008814 1.3e-64 250.4 212 60.8
AL2G17470 Arabidopsis lyrata HOM05D006958 ORTHO05D008814 1.6e-64 250.0 212 60.4
Carub.0002s0585 Capsella rubella HOM05D006958 ORTHO05D008814 2.8e-64 249.2 212 59.9
MELO3C010802.2 Cucumis melo HOM05D006958 ORTHO05D008814 1.1e-63 247.3 216 59.7
Thhalv10023590m.g Eutrema salsugineum HOM05D006958 ORTHO05D008814 5.3e-63 245.0 212 58.0
MBI16_g23890_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D008814 1.5e-62 243.4 222 59.5
unitig_744.g24127 Utricularia gibba HOM05D006958 ORTHO05D008814 1.5e-62 243.4 194 60.3
BcaB04g20216 Brassica carinata HOM05D006958 ORTHO05D008814 1.3e-61 240.4 215 57.2
DCAR_020049 Daucus carota HOM05D006958 ORTHO05D008814 1.3e-61 240.4 210 56.7
Sp2g04980 Schrenkiella parvula HOM05D006958 ORTHO05D008814 2.9e-61 239.2 212 57.5
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 1.9e-60 236.5 206 58.3
VMungo0647G0836 Vigna mungo HOM05D006958 ORTHO05D008814 5.5e-60 235.0 171 64.3
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 3.5e-59 232.3 291 46.7
C01p36350 Brassica napus HOM05D006958 ORTHO05D008814 4.6e-59 231.9 210 55.7
A01p28700 Brassica napus HOM05D006958 ORTHO05D008814 1.0e-58 230.7 210 55.7
BraA01t03033Z Brassica rapa HOM05D006958 ORTHO05D008814 2.3e-58 229.6 210 55.2
BolC1t03593H Brassica oleracea HOM05D006958 ORTHO05D008814 3.0e-58 229.2 211 55.9
ECA246G2880 Erigeron canadensis HOM05D006958 ORTHO05D008814 6.7e-58 228.0 155 71.0
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 2.5e-57 226.1 219 53.4
Cpa.g.sc142.28 Carica papaya HOM05D006958 ORTHO05D008814 6.9e-55 218.0 142 68.3
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 2.0e-54 216.5 213 54.9
Gohir.A05G210300 Gossypium hirsutum HOM05D006958 ORTHO05D008814 1.0e-53 214.2 144 71.5
PSO675G0096 Papaver somniferum HOM05D006958 ORTHO05D008814 2.9e-53 212.6 214 52.3
PSO541G2153 Papaver somniferum HOM05D006958 ORTHO05D008814 5.5e-52 208.4 214 51.9
EL10Ac1g02379 Beta vulgaris HOM05D006958 ORTHO05D008814 1.8e-50 203.4 142 65.5
PSO541G3524 Papaver somniferum HOM05D006958 ORTHO05D008814 3.0e-50 202.6 165 60.6
Zm00001eb325900 Zea mays HOM05D006958 ORTHO05D008814 1.7e-48 196.8 217 46.5
HPP92_009523 Vanilla planifolia HOM05D006958 ORTHO05D008814 8.2e-48 194.5 214 48.1
Psat6g018160 Pisum sativum HOM05D006958 ORTHO05D008814 8.8e-42 174.5 142 62.7
HPP92_009559 Vanilla planifolia HOM05D006958 ORTHO05D008814 1.7e-37 160.2 186 46.2
Pp3c12_1620 Physcomitrium patens HOM05D006958 ORTHO05D008814 9.7e-33 144.4 177 42.9
CBR_g51257 Chara braunii HOM05D006958 ORTHO05D008814 1.0e-29 134.4 185 40.5
Cfa010280 Carpinus fangiana HOM05D006958 ORTHO05D008814 3.2e-28 129.4 91 69.2
SMO334G0101 Selaginella moellendorffii HOM05D006958 ORTHO05D008814 4.7e-27 125.6 147 41.5
AUR62022480 Chenopodium quinoa HOM05D006958 ORTHO05D008814 1.0e-26 124.4 115 53.0
BolC4t24190H Brassica oleracea HOM05D006958 ORTHO05D008814 6.8e-26 121.7 131 49.6
MBI15_g25904_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D017181 2.2e-24 116.7 129 54.3
arahy.Tifrunner.gnm1.ann1.D1UQZZ Arachis hypogaea HOM05D006958 ORTHO05D008814 3.8e-21 105.9 200 36.5
C04p26140 Brassica napus HOM05D006958 ORTHO05D008814 1.5e-20 104.0 114 48.2
BcaC02g10644 Brassica carinata HOM05D006958 ORTHO05D008814 7.2e-20 101.7 148 41.2
Os01g0593100 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 2.7e-19 99.8 85 56.5
SEGI_26692 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 7.7e-14 81.6 83 44.6
Oeu049903.1 Olea europaea HOM05D006958 ORTHO05D008814 3.0e-10 69.7 42 71.4
AUR62022479 Chenopodium quinoa HOM05D006958 ORTHO05D008814 1.3e-08 64.3 39 69.2
EL10Ac1g02376 Beta vulgaris HOM05D006958 ORTHO05D008814 3.2e-07 59.7 66 48.5
Nn5g30604 Nelumbo nucifera HOM05D006958 ORTHO05D008814 3.2e-07 59.7 94 43.6
Psat0s3396g0160 Pisum sativum HOM05D006958 ORTHO05D008814 9.2e-07 58.2 39 61.5


User provided reference genes

Program Settings