Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 4.7e-61 237.7 118 100.0
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.7e-26 122.9 119 58.8
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 3.8e-26 121.7 119 57.1
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 1.9e-25 119.4 120 55.0
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 1.2e-24 116.7 121 52.1
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 1.6e-24 116.3 119 55.5
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 2.7e-24 115.5 119 53.8
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 7.8e-24 114.0 122 54.9
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 5.1e-23 111.3 125 55.2
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 8.7e-23 110.5 131 48.1
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 8.7e-23 110.5 115 50.4
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.1e-22 110.2 121 53.7
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 4.3e-22 108.2 120 52.5
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 2.8e-21 105.5 111 55.9
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 8.1e-21 104.0 119 49.6
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 8.1e-21 104.0 119 49.6
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.1e-20 103.6 126 54.0
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.4e-20 103.2 120 58.3
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 1.8e-20 102.8 112 50.9
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.8e-20 102.8 120 50.0
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 2.4e-20 102.4 115 48.7
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 4.0e-20 101.7 116 50.0
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 5.3e-20 101.3 120 51.7
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 6.9e-20 100.9 117 53.8
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 9.0e-20 100.5 111 55.0
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.5e-19 99.8 117 47.9
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.0e-19 99.4 116 51.7
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.0e-19 99.4 116 51.7
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.0e-19 99.4 134 43.3
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 4.5e-19 98.2 115 49.6
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 7.6e-19 97.4 119 48.7
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 9.9e-19 97.1 122 51.6
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.3e-18 96.7 109 51.4
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.3e-18 96.7 119 53.8
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 2.2e-18 95.9 103 51.5
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.9e-18 94.7 118 52.5
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 8.4e-18 94.0 117 51.3
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.1e-17 93.6 69 69.6
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.4e-17 93.2 115 48.7
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 1.9e-17 92.8 119 46.2
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.9e-17 92.8 108 49.1
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 2.4e-17 92.4 110 50.0
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 2.4e-17 92.4 110 49.1
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 2.4e-17 92.4 69 63.8
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 3.2e-17 92.0 124 44.4
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 5.4e-17 91.3 98 54.1
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.6e-16 89.7 80 61.2
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 2.1e-16 89.4 115 44.3
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 4.6e-16 88.2 118 44.1
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 6.0e-16 87.8 109 46.8
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 7.9e-16 87.4 83 59.0
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.0e-15 87.0 109 46.8
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.0e-15 87.0 109 46.8
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 1.0e-15 87.0 75 58.7
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.0e-15 87.0 65 61.5
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 1.8e-15 86.3 110 48.2
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 3.0e-15 85.5 107 46.7
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.9e-15 85.1 121 44.6
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 6.7e-15 84.3 78 55.1
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 6.7e-15 84.3 122 49.2
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 8.7e-15 84.0 118 42.4
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.1e-14 83.6 109 45.9
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.1e-14 83.6 109 45.9
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.5e-14 83.2 113 48.7
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.5e-14 83.2 112 49.1
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 2.5e-14 82.4 119 44.5
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 2.5e-14 82.4 121 44.6
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 3.3e-14 82.0 119 46.2
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 3.3e-14 82.0 113 47.8
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 4.3e-14 81.6 80 53.8
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 4.3e-14 81.6 97 47.4
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 7.4e-14 80.9 113 47.8
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 2.1e-13 79.3 143 39.2
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 2.8e-13 79.0 111 45.9
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 2.8e-13 79.0 117 40.2
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 3.7e-13 78.6 122 39.3
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 3.7e-13 78.6 118 44.1
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 3.7e-13 78.6 118 41.5
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 4.8e-13 78.2 82 52.4
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 1.1e-12 77.0 120 48.3
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 1.1e-12 77.0 118 46.6
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 1.4e-12 76.6 82 56.1
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 1.4e-12 76.6 125 41.6
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 1.4e-12 76.6 110 46.4
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 1.4e-12 76.6 77 54.5
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.8e-12 76.3 80 50.0
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 2.4e-12 75.9 65 58.5
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 3.1e-12 75.5 111 43.2
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 3.1e-12 75.5 118 40.7
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 6.9e-12 74.3 77 50.6
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 9.0e-12 73.9 75 52.0
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 1.2e-11 73.6 81 50.6
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.2e-11 73.6 57 57.9
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 1.5e-11 73.2 116 45.7
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 2.0e-11 72.8 119 44.5
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 2.0e-11 72.8 79 53.2
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 2.6e-11 72.4 111 41.4
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 2.6e-11 72.4 106 44.3
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 3.4e-11 72.0 44 63.6
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 4.5e-11 71.6 115 43.5
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 4.5e-11 71.6 115 43.5
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 4.5e-11 71.6 114 43.0
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 5.8e-11 71.2 115 41.7
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 9.9e-11 70.5 116 41.4
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 9.9e-11 70.5 103 38.8
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 1.3e-10 70.1 98 46.9
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 1.7e-10 69.7 110 40.9
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 1.7e-10 69.7 116 40.5
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 2.9e-10 68.9 112 44.6
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 2.9e-10 68.9 110 40.0
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.9e-10 68.9 84 45.2
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 3.8e-10 68.6 63 52.4
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 1.4e-09 66.6 47 68.1
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 1.4e-09 66.6 79 48.1
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 1.9e-09 66.2 52 61.5
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 1.9e-09 66.2 57 52.6
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 3.2e-09 65.5 83 42.2
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 4.2e-09 65.1 47 57.4
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 5.5e-09 64.7 72 51.4
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 7.1e-09 64.3 50 62.0
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 7.1e-09 64.3 113 44.2
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 1.2e-08 63.5 154 32.5
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 1.2e-08 63.5 114 41.2
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.6e-08 63.2 46 56.5
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 2.1e-08 62.8 49 61.2
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 2.1e-08 62.8 112 37.5
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 2.1e-08 62.8 73 47.9
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 3.5e-08 62.0 114 39.5
Lalb_Chr11g0062841 Lupinus albus HOM05D004288 ORTHO05D004997 3.5e-08 62.0 111 36.0
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 6.0e-08 61.2 54 55.6
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 6.0e-08 61.2 114 39.5
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 7.9e-08 60.8 115 38.3
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 7.9e-08 60.8 111 40.5
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 7.9e-08 60.8 51 54.9
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 3.0e-07 58.9 75 41.3
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 3.0e-07 58.9 56 50.0
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 3.0e-07 58.9 122 38.5
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 3.9e-07 58.5 36 69.4
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 5.1e-07 58.2 64 51.6
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 5.1e-07 58.2 36 69.4
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 6.7e-07 57.8 64 51.6
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 8.7e-07 57.4 48 58.3
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 1.1e-06 57.0 49 57.1
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 1.1e-06 57.0 48 56.2
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 1.1e-06 57.0 48 56.2
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.5e-06 56.6 111 40.5
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 1.5e-06 56.6 37 67.6
AUR62024063 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.5e-06 55.8 63 49.2
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 3.3e-06 55.5 45 55.6
Lalb_Chr23g0267451 Lupinus albus HOM05D004288 ORTHO05D004997 4.3e-06 55.1 105 37.1
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 5.6e-06 54.7 48 54.2


User provided reference genes

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