Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g05550 Coffea canephora HOM05D006600 ORTHO05D008446 2.9e-161 572.0 328 100.0
Rhsim07G0222000 Rhododendron simsii HOM05D006600 ORTHO05D008446 1.7e-132 476.5 328 82.0
arahy.Tifrunner.gnm1.ann1.H62KW4 Arachis hypogaea HOM05D006600 ORTHO05D008446 2.2e-132 476.1 328 84.8
arahy.Tifrunner.gnm1.ann1.UTGV4K Arachis hypogaea HOM05D006600 ORTHO05D008446 4.9e-132 474.9 328 84.5
QL12p037547 Quercus lobata HOM05D006600 ORTHO05D008446 6.4e-132 474.6 327 69.1
Phvul.009G070400 Phaseolus vulgaris HOM05D006600 ORTHO05D008446 1.8e-131 473.0 327 84.4
Lj1g0008642 Lotus japonicus HOM05D006600 ORTHO05D008446 7.0e-131 471.1 326 84.0
Solyc04g078120.3 Solanum lycopersicum HOM05D006600 ORTHO05D008446 7.0e-131 471.1 328 71.6
VMungo1309G2568 Vigna mungo HOM05D006600 ORTHO05D008446 9.2e-131 470.7 327 83.8
Glyma.06G045000 Glycine max HOM05D006600 ORTHO05D008446 1.2e-130 470.3 327 84.1
Lalb_Chr23g0267431 Lupinus albus HOM05D006600 ORTHO05D008446 1.2e-130 470.3 328 82.6
CSS0036700 Camellia sinensis var. sinensis HOM05D006600 ORTHO05D008446 2.7e-130 469.2 328 82.6
Sopen04g031730 Solanum pennellii HOM05D006600 ORTHO05D008446 2.7e-130 469.2 328 69.8
CANSAT35G1599 Cannabis sativa HOM05D006600 ORTHO05D008446 3.5e-130 468.8 328 84.5
Sabra14G0012400 Salix brachista HOM05D006600 ORTHO05D008446 3.5e-130 468.8 326 66.9
TWI56G0382 Tripterygium wilfordii HOM05D006600 ORTHO05D008446 3.5e-130 468.8 329 82.4
Prupe.1G425800 Prunus persica HOM05D006600 ORTHO05D008446 5.9e-130 468.0 328 83.2
Dinv44978 Davidia involucrata HOM05D006600 ORTHO05D008446 7.8e-130 467.6 328 82.6
Nitab4.5_0000934g0020 Nicotiana tabacum HOM05D006600 ORTHO05D008446 7.8e-130 467.6 328 67.4
vmacro04585 Vaccinium macrocarpon HOM05D006600 ORTHO05D008446 1.7e-129 466.5 328 83.2
Peaxi162Scf00081g00125 Petunia axillaris HOM05D006600 ORTHO05D008446 2.3e-129 466.1 328 81.1
Migut.C00501 Erythranthe guttata HOM05D006600 ORTHO05D008446 3.0e-129 465.7 325 82.5
PGSC0003DMG400021533 Solanum tuberosum HOM05D006600 ORTHO05D008446 3.0e-129 465.7 328 79.3
Glyma.04G044500 Glycine max HOM05D006600 ORTHO05D008446 3.9e-129 465.3 327 68.8
Oeu050861.1 Olea europaea HOM05D006600 ORTHO05D008446 3.9e-129 465.3 324 71.3
TPR.G33718 Trifolium pratense HOM05D006600 ORTHO05D008446 6.6e-129 464.5 323 68.4
Thecc.08G092000 Theobroma cacao HOM05D006600 ORTHO05D008446 8.6e-129 464.2 324 72.8
Eucgr.F00122 Eucalyptus grandis HOM05D006600 ORTHO05D008446 1.1e-128 463.8 328 82.9
TAR625G0631 Trochodendron aralioides HOM05D006600 ORTHO05D008446 1.1e-128 463.8 328 81.1
Cfa013668 Carpinus fangiana HOM05D006600 ORTHO05D008446 1.9e-128 463.0 328 81.7
Medtr3g102800 Medicago truncatula HOM05D006600 ORTHO05D008446 1.9e-128 463.0 325 68.0
Nitab4.5_0003228g0070 Nicotiana tabacum HOM05D006600 ORTHO05D008446 1.9e-128 463.0 328 67.4
CiPaw.08G048500 Carya illinoinensis HOM05D006600 ORTHO05D008446 3.3e-128 462.2 325 68.3
Manes.18G044200 Manihot esculenta HOM05D006600 ORTHO05D008446 3.3e-128 462.2 328 67.1
Ciclev10001599m.g Citrus clementina HOM05D006600 ORTHO05D008446 4.3e-128 461.8 324 82.1
THA.LOC104807092 Tarenaya hassleriana HOM05D006600 ORTHO05D008446 4.3e-128 461.8 320 68.4
MSTRG.1040 Avicennia marina HOM05D006600 ORTHO05D008446 5.6e-128 461.5 325 79.1
Gorai.009G217900 Gossypium raimondii HOM05D006600 ORTHO05D008446 5.6e-128 461.5 324 82.1
ClCG08G016350 Citrullus lanatus HOM05D006600 ORTHO05D008446 7.3e-128 461.1 328 82.0
DCAR_020080 Daucus carota HOM05D006600 ORTHO05D008446 9.5e-128 460.7 328 80.2
Gohir.A05G207900 Gossypium hirsutum HOM05D006600 ORTHO05D008446 9.5e-128 460.7 324 82.7
PSO541G2868 Papaver somniferum HOM05D006600 ORTHO05D008446 9.5e-128 460.7 328 74.7
PGR083G0558 Punica granatum HOM05D006600 ORTHO05D008446 9.5e-128 460.7 328 79.9
Sed0004073 Sechium edule HOM05D006600 ORTHO05D008446 1.6e-127 459.9 328 81.7
PSO675G8764 Papaver somniferum HOM05D006600 ORTHO05D008446 2.1e-127 459.5 328 67.1
Psat5g038240 Pisum sativum HOM05D006600 ORTHO05D008446 3.6e-127 458.8 325 67.7
SalBow7G4697 Salvia bowleyana HOM05D006600 ORTHO05D008446 3.6e-127 458.8 325 81.2
Gohir.D05G211400 Gossypium hirsutum HOM05D006600 ORTHO05D008446 6.2e-127 458.0 324 82.1
CsaV3_2G026260 Cucumis sativus L. HOM05D006600 ORTHO05D008446 1.0e-126 457.2 328 80.5
Atru.chr13.803 Acer truncatum HOM05D006600 ORTHO05D008446 2.3e-126 456.1 324 81.5
Actinidia38095 Actinidia chinensis HOM05D006600 ORTHO05D008446 5.2e-126 454.9 327 80.4
unitig_62.g23648 Utricularia gibba HOM05D006600 ORTHO05D008446 5.2e-126 454.9 324 66.4
Ca_15912_v3 Cicer arietinum L. HOM05D006600 ORTHO05D008446 6.8e-126 454.5 325 78.2
MD08G1088100 Malus domestica HOM05D006600 ORTHO05D008446 8.9e-126 454.1 328 81.7
Lsat_1_v5_gn_6_112481 Lactuca sativa HOM05D006600 ORTHO05D008446 2.0e-125 453.0 327 80.7
Ah.15g092540 Amaranthus hybridus HOM05D006600 ORTHO05D008446 3.4e-125 452.2 326 65.6
HanXRQChr10g0304021 Helianthus annuus HOM05D006600 ORTHO05D008446 5.8e-125 451.4 328 67.4
RcHm_v2.0_Chr6g0309231 Rosa chinensis HOM05D006600 ORTHO05D008446 2.9e-124 449.1 327 81.0
SGA_v2.0_scaffold244G44349 Striga asiatica HOM05D006600 ORTHO05D008446 6.4e-124 448.0 325 65.8
Aqoxy6G02751 Aquilegia oxysepala HOM05D006600 ORTHO05D008446 1.1e-123 447.2 325 80.6
MELO3C010818.2 Cucumis melo HOM05D006600 ORTHO05D008446 1.4e-123 446.8 328 79.3
Hma1.2p1_0923F.1_g236990 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 1.4e-123 446.8 328 80.2
FvH4_2g33350 Fragaria vesca HOM05D006600 ORTHO05D008446 3.2e-123 445.7 322 81.1
FAN20G2273 Fragaria x ananassa HOM05D006600 ORTHO05D008446 3.2e-123 445.7 322 74.5
FAN15G1504 Fragaria x ananassa HOM05D006600 ORTHO05D008446 4.1e-123 445.3 322 81.4
FAN24G1058 Fragaria x ananassa HOM05D006600 ORTHO05D008446 5.4e-123 444.9 322 81.1
Haze_22302 Corylus avellana HOM05D006600 ORTHO05D008446 1.6e-122 443.4 328 78.4
AT5G65860 Arabidopsis thaliana HOM05D006600 ORTHO05D008446 2.7e-122 442.6 323 72.8
Lj4A761T87 Lonicera japonica HOM05D006600 ORTHO05D008446 4.6e-122 441.8 236 84.7
Carub.0008s2674 Capsella rubella HOM05D006600 ORTHO05D008446 1.3e-121 440.3 322 78.3
AUR62038783 Chenopodium quinoa HOM05D006600 ORTHO05D008446 3.9e-121 438.7 325 63.7
MBI16_g13383_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D008446 1.9e-120 436.4 326 64.1
Thhalv10005718m.g Eutrema salsugineum HOM05D006600 ORTHO05D008446 2.5e-120 436.0 326 68.7
AUR62037454 Chenopodium quinoa HOM05D006600 ORTHO05D008446 3.3e-120 435.6 325 63.7
CARHR279850 Cardamine hirsuta HOM05D006600 ORTHO05D008446 5.6e-120 434.9 329 76.3
EL10As7g23812 Beta vulgaris HOM05D006600 ORTHO05D008446 9.5e-120 434.1 369 58.8
CDE04G0491 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 9.5e-120 434.1 327 63.9
GSVIVG01009372001 Vitis vinifera HOM05D006600 ORTHO05D008446 2.1e-119 433.0 236 81.8
Sp2g28940 Schrenkiella parvula HOM05D006600 ORTHO05D008446 3.6e-119 432.2 326 77.6
FAN27G3009 Fragaria x ananassa HOM05D006600 ORTHO05D008446 8.1e-119 431.0 322 79.2
BolC3t18247H Brassica oleracea HOM05D006600 ORTHO05D008446 2.3e-118 429.5 326 62.6
BcaB02g09901 Brassica carinata HOM05D006600 ORTHO05D008446 8.9e-118 427.6 326 62.0
C03p59830 Brassica napus HOM05D006600 ORTHO05D008446 1.5e-117 426.8 326 62.6
CAN.G1054.24 Capsicum annuum HOM05D006600 ORTHO05D008446 1.5e-117 426.8 236 81.4
Cpa.g.sc21.115 Carica papaya HOM05D006600 ORTHO05D008446 2.6e-117 426.0 236 80.9
BraA06t26199Z Brassica rapa HOM05D006600 ORTHO05D008446 3.4e-117 425.6 326 62.0
A06p32700 Brassica napus HOM05D006600 ORTHO05D008446 4.4e-117 425.2 326 62.0
ATR0030G048 Amborella trichopoda HOM05D006600 ORTHO05D008446 1.3e-116 423.7 332 75.3
Zm00001eb214310 Zea mays HOM05D006600 ORTHO05D008446 1.0e-113 414.1 325 60.3
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 3.3e-112 409.1 311 77.8
SEGI_28402 Sequoiadendron giganteum HOM05D006600 ORTHO05D008446 6.2e-111 404.8 317 77.3
HPP92_018760 Vanilla planifolia HOM05D006600 ORTHO05D008446 6.8e-110 401.4 322 60.2
Os03g0761200 Oryza sativa ssp. japonica HOM05D006600 ORTHO05D008446 1.2e-109 400.6 325 59.7
BcaC01g02830 Brassica carinata HOM05D006600 ORTHO05D008446 4.9e-108 395.2 234 75.2
COL.COLO4_28538 Corchorus olitorius HOM05D006600 ORTHO05D008446 2.0e-101 373.2 335 56.4
Nn1g04625 Nelumbo nucifera HOM05D006600 ORTHO05D008446 3.4e-101 372.5 328 71.3
SMO228G0045 Selaginella moellendorffii HOM05D006600 ORTHO05D008446 4.9e-100 368.6 326 55.5
AagrBONN_evm.TU.Sc2ySwM_228.1907 Anthoceros agrestis HOM05D006600 ORTHO05D008446 7.3e-96 354.8 321 67.9
Mapoly0063s0069 Marchantia polymorpha HOM05D006600 ORTHO05D008446 1.1e-94 350.9 320 66.9
Potri.014G019000 Populus trichocarpa HOM05D006600 ORTHO05D008446 1.4e-94 350.5 262 82.4
Duzib093G2027 Durio zibethinus HOM05D006600 ORTHO05D008446 2.0e-93 346.7 259 64.5
ECA246G2737 Erigeron canadensis HOM05D006600 ORTHO05D008446 1.3e-92 344.0 262 79.8
Hma1.2p1_0923F.1_g236980 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 1.1e-88 330.9 279 77.4
COL.COLO4_28541 Corchorus olitorius HOM05D006600 ORTHO05D008446 3.5e-82 309.3 244 63.1
Sc26g0004110 Simmondsia chinensis HOM05D006600 ORTHO05D008446 5.6e-80 302.0 251 78.1
AL8G43570 Arabidopsis lyrata HOM05D006600 ORTHO05D008446 4.8e-79 298.9 247 78.1
Cre01.g050050 Chlamydomonas reinhardtii HOM05D006600 ORTHO05D008446 1.7e-68 263.8 374 37.4
BcaC01g02829 Brassica carinata HOM05D006600 ORTHO05D008446 1.9e-64 250.4 228 55.3
Pp3c17_19880 Physcomitrium patens HOM05D006600 ORTHO05D008446 9.7e-64 248.1 241 68.0
MCO09G534 Micromonas commoda HOM05D006600 ORTHO05D008446 1.0e-60 238.0 325 45.5
MD15G1072900 Malus domestica HOM05D006600 ORTHO05D008446 1.4e-59 234.2 191 60.7
CBR_g40512 Chara braunii HOM05D000409 ORTHO05D000184 2.6e-56 223.4 189 55.6
TAR624G0301 Trochodendron aralioides HOM05D006600 ORTHO05D008446 5.7e-56 222.2 138 75.4
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 1.1e-48 198.0 124 70.2
TAR374G0485 Trochodendron aralioides HOM05D000474 ORTHO05D003648 1.1e-48 198.0 126 72.2
Actinidia08258 Actinidia chinensis HOM05D006600 ORTHO05D008446 2.0e-40 170.6 94 81.9
Oeu040380.1 Olea europaea HOM05D006600 ORTHO05D008446 3.6e-18 96.7 87 62.1
MBI16_g35586_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D001493 4.4e-16 89.7 58 69.0
Dinv39240 Davidia involucrata HOM05D006600 ORTHO05D008446 3.1e-09 67.0 90 43.3
Actinidia08259 Actinidia chinensis HOM05D006600 ORTHO05D008446 1.7e-07 61.2 43 60.5
GSVIVG01038121001 Vitis vinifera HOM05D006600 ORTHO05D008446 1.7e-07 61.2 37 75.7
CBR_g40511 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-06 58.5 146 30.8


User provided reference genes

Program Settings