Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 1.8e-156 555.8 272 100.0
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 6.3e-101 371.3 274 67.2
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 5.9e-99 364.8 285 64.9
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 2.2e-98 362.8 276 66.7
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 3.2e-97 359.0 281 66.2
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 5.5e-97 358.2 281 65.1
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 7.2e-97 357.8 280 65.4
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 9.7e-94 347.4 280 62.9
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.3e-93 347.1 285 63.9
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 2.2e-93 346.3 282 63.8
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 3.7e-93 345.5 282 63.1
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 1.4e-92 343.6 281 62.3
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 9.1e-92 340.9 275 63.6
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 2.6e-91 339.3 275 62.9
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.7e-90 336.7 271 61.3
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 2.9e-90 335.9 274 64.2
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 5.5e-89 331.6 271 60.9
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 1.4e-87 327.0 275 61.8
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 5.2e-87 325.1 288 62.2
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 2.0e-86 323.2 270 61.5
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 5.7e-86 321.6 279 59.9
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 9.7e-86 320.9 281 58.0
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 9.7e-86 320.9 281 58.0
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 5.3e-84 315.1 282 59.9
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.6e-83 313.5 280 58.6
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.6e-83 313.5 280 58.6
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 1.7e-82 310.1 280 57.5
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 2.9e-82 309.3 273 57.1
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 3.8e-82 308.9 278 57.2
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 8.5e-82 307.8 280 58.2
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 1.9e-81 306.6 278 56.5
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 9.4e-81 304.3 278 56.1
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 1.6e-80 303.5 275 56.7
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 1.8e-79 300.1 275 55.6
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 3.0e-79 299.3 281 55.9
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 1.2e-78 297.4 279 56.6
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 2.6e-78 296.2 286 54.9
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 2.2e-77 293.1 271 55.7
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 2.8e-77 292.7 276 59.4
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 4.8e-77 292.0 286 54.2
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 8.3e-77 291.2 274 56.6
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.8e-76 290.0 269 56.1
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 2.0e-75 286.6 271 56.5
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 2.9e-74 282.7 278 55.0
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 3.8e-74 282.3 278 53.6
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 1.1e-73 280.8 278 53.6
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 1.1e-73 280.8 292 52.4
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 1.5e-73 280.4 280 53.2
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 2.5e-73 279.6 288 52.1
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 7.2e-73 278.1 286 49.0
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 1.2e-72 277.3 292 51.7
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 3.0e-71 272.7 288 52.8
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 4.0e-71 272.3 231 58.4
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 3.4e-70 269.2 288 50.3
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 4.4e-70 268.9 284 51.4
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 1.3e-69 267.3 284 53.2
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 1.7e-69 266.9 292 51.7
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 2.8e-69 266.2 284 51.1
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.8e-68 263.5 275 52.7
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 3.1e-68 262.7 275 52.4
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 3.1e-68 262.7 275 52.4
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 4.1e-68 262.3 273 49.8
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 9.2e-68 261.2 223 60.1
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.6e-67 260.4 275 52.0
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 4.5e-67 258.8 279 51.3
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.7e-66 256.9 275 51.3
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 2.3e-66 256.5 271 50.2
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 5.0e-66 255.4 272 50.7
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 5.0e-66 255.4 238 55.5
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 8.6e-66 254.6 272 50.4
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 1.9e-65 253.4 283 51.9
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 2.5e-65 253.1 265 49.1
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 2.5e-65 253.1 267 51.3
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 4.7e-64 248.8 267 50.2
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 6.8e-63 245.0 276 49.6
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 2.0e-62 243.4 272 48.9
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 7.5e-62 241.5 272 47.8
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 2.2e-61 240.0 222 52.3
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 4.1e-60 235.7 274 46.7
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 9.2e-60 234.6 281 48.0
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 1.5e-57 227.3 230 51.7
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 1.0e-55 221.1 266 45.9
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 2.0e-54 216.9 271 44.3
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 2.4e-52 209.9 271 43.2
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 2.7e-51 206.5 275 43.3
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 6.0e-51 205.3 273 45.4
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 3.0e-50 203.0 271 42.8
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 8.6e-50 201.4 271 43.9
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.9e-49 200.3 144 64.6
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 2.1e-48 196.8 212 47.6
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 2.8e-48 196.4 174 54.0
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 8.9e-47 191.4 155 56.8
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 1.3e-45 187.6 222 46.4
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 1.3e-45 187.6 222 46.4
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 3.2e-44 183.0 268 40.3
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 1.2e-43 181.0 212 47.6
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 1.3e-42 177.6 221 45.7
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 1.3e-42 177.6 221 45.7
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 2.3e-42 176.8 212 46.7
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 2.1e-40 170.2 213 46.5
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 8.9e-39 164.9 133 55.6
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.9e-36 157.1 150 53.3
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 5.2e-31 139.0 282 31.9
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 3.3e-25 119.8 122 57.4
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 9.6e-25 118.2 128 44.5
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 9.6e-25 118.2 119 49.6
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 1.1e-23 114.8 274 31.4
Lj5P501T7 Lonicera japonica HOM05D006323 ORTHO05D007827 2.4e-23 113.6 88 64.8
Lj1P1160T24 Lonicera japonica HOM05D006323 ORTHO05D007827 9.9e-22 108.2 84 65.5
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 2.2e-21 107.1 117 53.8
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 8.4e-21 105.1 158 35.4
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 2.4e-20 103.6 106 48.1
SEGI_30290 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 5.1e-18 95.9 123 44.7
Oeu037483.1 Olea europaea HOM05D006323 ORTHO05D007827 8.1e-16 88.6 187 40.6
AagrBONN_evm.TU.Sc2ySwM_362.2944 Anthoceros agrestis HOM05D006323 ORTHO05D007827 3.1e-15 86.7 244 28.3
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 3.1e-15 86.7 90 50.0
CBR_g25752 Chara braunii HOM05D006323 ORTHO05D007827 2.4e-12 77.0 311 26.0
Zm00001eb264620 Zea mays HOM05D006323 ORTHO05D007827 1.6e-11 74.3 90 50.0


User provided reference genes

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