Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 2.6e-127 458.8 239 100.0
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 4.8e-113 411.4 239 84.9
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 1.8e-112 409.5 239 85.4
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 5.9e-111 404.4 239 84.5
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 5.0e-110 401.4 239 83.7
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 2.5e-109 399.1 239 82.8
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 1.2e-108 396.7 239 83.3
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 6.1e-108 394.4 239 82.0
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 7.9e-108 394.0 239 81.6
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 6.7e-107 391.0 234 84.2
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 4.4e-106 388.3 239 81.6
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 5.7e-106 387.9 232 83.6
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 7.4e-106 387.5 239 81.6
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 6.3e-105 384.4 239 80.8
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 8.2e-105 384.0 235 79.1
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 8.2e-105 384.0 235 79.1
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 8.2e-105 384.0 231 82.3
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 4.1e-104 381.7 235 80.9
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 9.1e-104 380.6 232 81.9
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 9.1e-104 380.6 235 80.4
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 9.1e-104 380.6 235 80.9
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.6e-103 379.8 235 79.6
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 4.5e-103 378.3 237 80.6
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.0e-102 377.1 232 79.7
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 1.3e-102 376.7 232 81.5
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 1.7e-102 376.3 235 79.1
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 5.0e-102 374.8 233 80.7
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 6.5e-102 374.4 235 77.0
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 1.9e-101 372.9 241 76.8
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 7.2e-101 370.9 234 79.5
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 1.6e-100 369.8 234 76.5
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 2.1e-100 369.4 235 78.3
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 2.7e-100 369.0 239 77.4
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 3.6e-100 368.6 310 64.8
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 6.1e-100 367.9 233 78.1
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 8.0e-100 367.5 233 78.5
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 1.8e-99 366.3 232 77.6
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 2.3e-99 365.9 238 74.4
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.2e-98 363.6 234 76.5
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 1.5e-98 363.2 235 75.7
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 5.7e-98 361.3 234 75.6
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 1.3e-97 360.1 237 76.4
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 2.2e-97 359.4 225 78.2
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 2.8e-97 359.0 233 77.3
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 8.2e-97 357.5 232 77.2
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 8.2e-97 357.5 238 71.0
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.1e-96 357.1 234 73.9
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.4e-96 356.7 234 73.5
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 1.4e-96 356.7 232 75.4
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 2.4e-96 355.9 235 75.3
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 3.1e-96 355.5 234 73.5
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 7.0e-96 354.4 232 75.0
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 7.0e-96 354.4 235 75.7
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 9.1e-96 354.0 234 72.6
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 1.2e-95 353.6 204 86.8
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.6e-95 353.2 232 75.0
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 2.7e-95 352.4 259 69.5
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 2.7e-95 352.4 237 74.3
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 3.5e-95 352.1 235 71.9
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 5.9e-95 351.3 235 72.8
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 5.9e-95 351.3 235 72.3
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 5.9e-95 351.3 235 72.8
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 5.9e-95 351.3 235 72.8
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 5.9e-95 351.3 235 72.3
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 5.9e-95 351.3 228 75.9
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 1.3e-94 350.1 279 66.3
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.9e-94 349.0 205 86.3
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 3.8e-94 348.6 230 73.0
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.5e-93 346.7 230 73.5
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 2.5e-93 345.9 234 72.2
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 9.4e-93 344.0 237 73.8
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 1.8e-91 339.7 271 65.7
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 3.0e-91 339.0 233 72.1
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 1.2e-90 337.0 203 81.3
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 3.4e-90 335.5 231 74.5
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 4.4e-90 335.1 235 71.5
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 9.8e-90 334.0 232 74.6
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 9.8e-90 334.0 232 74.6
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.3e-89 333.6 239 72.8
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 1.7e-89 333.2 208 81.2
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 2.2e-89 332.8 220 74.1
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 8.3e-89 330.9 266 67.3
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 8.3e-89 330.9 238 71.4
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 9.1e-88 327.4 217 76.0
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 1.2e-87 327.0 199 82.9
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.6e-87 326.6 201 80.6
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 7.2e-85 317.8 234 66.2
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 9.5e-85 317.4 208 75.0
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 4.7e-84 315.1 205 75.6
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 6.8e-83 311.2 231 64.9
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 8.9e-83 310.8 202 76.7
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 4.4e-82 308.5 231 64.5
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 4.4e-82 308.5 238 62.2
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 9.8e-82 307.4 235 64.3
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 9.8e-82 307.4 232 68.5
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.8e-81 305.8 227 69.2
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.4e-80 303.5 220 70.0
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.4e-80 303.5 190 82.6
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 3.1e-80 302.4 231 61.5
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 4.1e-80 302.0 190 79.5
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 4.5e-79 298.5 170 85.9
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 1.1e-77 293.9 195 73.3
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 5.6e-77 291.6 233 59.2
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 6.1e-76 288.1 208 72.6
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 1.0e-75 287.3 233 60.1
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 1.0e-75 287.3 233 60.1
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 2.3e-75 286.2 233 59.7
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 4.0e-75 285.4 223 61.9
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 4.0e-75 285.4 233 60.5
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 5.2e-75 285.0 233 60.1
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.6e-74 282.7 188 72.9
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 8.3e-73 277.7 165 82.4
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 2.0e-71 273.1 225 58.7
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 6.0e-71 271.6 233 58.4
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 1.0e-70 270.8 164 81.7
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 1.7e-70 270.0 226 58.4
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.3e-69 265.8 259 59.1
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 2.1e-68 263.1 153 82.4
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.8e-68 262.7 236 53.8
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 8.0e-68 261.2 232 60.8
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 5.2e-67 258.5 150 82.0
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 1.7e-62 243.4 226 55.8
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 3.9e-62 242.3 221 55.7
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.7e-60 235.3 203 63.5
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 6.4e-57 224.9 129 86.0
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 1.3e-54 217.2 167 61.7
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 4.9e-49 198.7 133 72.2
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 3.2e-48 196.1 133 69.9
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 9.2e-48 194.5 235 48.5
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 1.6e-44 183.7 235 45.1
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 4.0e-43 179.1 235 45.5
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 2.9e-41 172.9 102 82.4
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 3.5e-39 166.0 101 79.2
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.0e-38 164.5 105 74.3
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 1.3e-38 164.1 111 73.0
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 1.8e-35 153.7 111 71.2
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 6.9e-35 151.8 230 38.3
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 9.0e-35 151.4 266 38.7
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 9.6e-29 131.3 76 80.3
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 1.1e-27 127.9 133 47.4
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 5.3e-27 125.6 215 34.0
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 9.9e-26 121.3 63 93.7
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 7.9e-23 111.7 106 58.5
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 1.9e-21 107.1 67 82.1
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 5.6e-21 105.5 226 33.2
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 5.6e-21 105.5 226 33.2
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 7.1e-16 88.6 51 84.3
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 7.9e-15 85.1 56 71.4
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 8.7e-14 81.6 201 32.8
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 1.9e-13 80.5 47 78.7
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.9e-13 80.5 89 46.1
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 1.2e-10 71.2 56 62.5
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 1.5e-10 70.9 52 63.5
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 2.0e-10 70.5 48 66.7
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 9.4e-08 61.6 46 67.4
arahy.Tifrunner.gnm1.ann1.FL5MRT Arachis hypogaea HOM05D017492 ORTHO05D005320 1.2e-07 61.2 69 56.5
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 3.6e-07 59.7 52 53.8
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 2.3e-06 57.0 50 52.0


User provided reference genes

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