Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 4.8e-89 331.3 180 100.0
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.2e-60 236.9 173 68.8
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.2e-60 236.9 175 69.7
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 3.3e-58 228.8 184 66.3
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 5.7e-58 228.0 180 66.1
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 2.2e-57 226.1 177 67.2
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 7.7e-55 217.6 175 63.4
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 1.3e-54 216.9 175 65.7
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 3.8e-54 215.3 176 65.9
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 1.9e-53 213.0 174 65.5
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 7.2e-53 211.1 151 68.9
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.7e-52 209.1 176 64.8
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 1.0e-51 207.2 173 62.4
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 5.7e-50 201.4 177 60.5
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 7.4e-50 201.1 173 62.4
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 9.7e-50 200.7 173 64.2
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 1.7e-49 199.9 173 59.5
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 3.7e-49 198.7 149 65.1
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 8.2e-49 197.6 175 61.1
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 8.2e-49 197.6 173 60.7
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 1.4e-48 196.8 172 58.7
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 4.1e-48 195.3 174 59.8
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 3.5e-47 192.2 173 57.2
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 4.5e-47 191.8 175 56.6
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 5.9e-47 191.4 181 56.9
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 1.7e-46 189.9 183 57.9
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 2.2e-46 189.5 183 57.4
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 2.2e-46 189.5 173 56.1
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.9e-46 189.1 188 61.2
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 2.9e-46 189.1 172 58.7
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 3.8e-46 188.7 175 54.9
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 3.8e-46 188.7 173 57.2
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 3.8e-46 188.7 175 56.6
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 5.0e-46 188.3 171 57.3
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.0e-46 188.3 171 57.3
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 6.5e-46 188.0 173 56.6
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 6.5e-46 188.0 177 57.1
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 8.5e-46 187.6 172 55.2
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.5e-45 186.8 146 64.4
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 2.5e-45 186.0 181 55.8
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 3.2e-45 185.7 172 57.6
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 7.2e-45 184.5 175 60.0
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 7.2e-45 184.5 175 58.9
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 1.2e-44 183.7 174 60.9
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 2.1e-44 183.0 178 56.2
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 3.6e-44 182.2 185 60.5
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 8.0e-44 181.0 172 57.6
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 1.8e-43 179.9 149 62.4
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 2.3e-43 179.5 175 57.1
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 3.0e-43 179.1 173 52.0
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 4.0e-43 178.7 177 56.5
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 6.7e-43 177.9 172 57.0
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 8.8e-43 177.6 174 52.9
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 1.2e-42 177.2 178 53.9
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 1.2e-42 177.2 178 53.9
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.2e-42 177.2 140 62.1
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 1.2e-42 177.2 187 50.3
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 1.2e-42 177.2 140 62.9
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 1.5e-42 176.8 122 70.5
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 2.0e-42 176.4 147 60.5
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 2.0e-42 176.4 140 65.0
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 2.0e-42 176.4 150 61.3
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 4.4e-42 175.3 140 61.4
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 4.4e-42 175.3 144 62.5
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 9.7e-42 174.1 174 54.6
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 1.3e-41 173.7 178 55.6
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 2.2e-41 172.9 154 59.7
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 8.2e-41 171.0 138 61.6
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 8.2e-41 171.0 177 53.1
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.1e-40 170.6 177 54.2
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 1.4e-40 170.2 138 62.3
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 1.4e-40 170.2 147 57.8
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 4.1e-40 168.7 118 70.3
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 7.0e-40 167.9 153 56.9
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 9.1e-40 167.5 141 57.4
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 9.1e-40 167.5 175 54.3
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 9.1e-40 167.5 142 60.6
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 9.1e-40 167.5 230 46.5
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 1.2e-39 167.2 182 59.3
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 1.2e-39 167.2 142 59.9
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 2.0e-39 166.4 141 57.4
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 2.0e-39 166.4 238 42.4
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 2.0e-39 166.4 173 51.4
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 3.5e-39 165.6 137 63.5
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 4.5e-39 165.2 186 52.7
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 5.9e-39 164.9 118 71.2
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 1.0e-38 164.1 120 65.0
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 1.0e-38 164.1 179 50.3
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 1.3e-38 163.7 141 56.7
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 1.3e-38 163.7 141 56.7
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 1.3e-38 163.7 175 49.7
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 2.9e-38 162.5 180 48.3
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 2.9e-38 162.5 178 47.8
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 2.9e-38 162.5 144 58.3
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 3.8e-38 162.2 178 46.6
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 3.8e-38 162.2 178 46.6
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 5.0e-38 161.8 179 47.5
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 6.5e-38 161.4 181 48.1
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 6.5e-38 161.4 171 54.4
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 8.5e-38 161.0 178 47.2
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 1.1e-37 160.6 142 54.9
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 1.5e-37 160.2 206 47.1
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.9e-37 159.8 178 46.6
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 2.5e-37 159.5 139 55.4
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 4.2e-37 158.7 147 59.2
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 5.5e-37 158.3 178 47.2
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 5.5e-37 158.3 149 57.0
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 7.2e-37 157.9 177 53.1
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 1.4e-35 153.7 138 54.3
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 2.3e-35 152.9 138 54.3
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 3.0e-35 152.5 138 55.1
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 1.5e-34 150.2 120 61.7
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 4.8e-33 145.2 98 72.4
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 8.3e-33 144.4 157 54.1
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 1.4e-32 143.7 143 53.8
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.1e-28 129.8 153 46.4
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.1e-28 129.8 153 46.4
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 2.1e-28 129.8 245 34.7
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.8e-28 129.4 154 44.8
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 1.4e-27 127.1 150 50.7
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 4.0e-27 125.6 120 48.3
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 4.0e-27 125.6 156 45.5
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 6.8e-27 124.8 117 49.6
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 2.0e-26 123.2 115 58.3
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 2.6e-26 122.9 141 50.4
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 5.7e-26 121.7 137 43.8
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 1.8e-24 116.7 175 41.7
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.7e-23 112.8 151 54.3
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 1.7e-22 110.2 129 51.2
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 1.7e-22 110.2 129 51.2
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 1.7e-22 110.2 171 39.2
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 4.9e-17 92.0 103 46.6
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 4.1e-16 89.0 171 37.4
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 1.1e-13 80.9 90 52.2
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 9.5e-13 77.8 110 41.8
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 2.6e-10 69.7 101 41.6
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 3.4e-10 69.3 95 40.0
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 4.9e-09 65.5 101 39.6
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 6.4e-09 65.1 95 38.9
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 1.1e-08 64.3 101 38.6
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 1.4e-08 63.9 58 58.6
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 5.4e-08 62.0 97 39.2
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 5.4e-08 62.0 97 39.2


User provided reference genes

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