Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.5e-158 562.8 269 100.0
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.3e-95 352.8 269 67.3
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 5.6e-94 348.2 228 74.6
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 9.6e-94 347.4 269 66.5
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 1.6e-93 346.7 274 65.0
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 6.2e-93 344.7 263 67.3
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 4.0e-92 342.0 230 72.6
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.0e-91 339.7 262 67.2
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 2.0e-91 339.7 270 63.3
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 2.0e-91 339.7 270 63.3
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 4.5e-91 338.6 262 66.4
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 9.9e-91 337.4 263 65.4
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 4.9e-90 335.1 264 67.0
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.9e-89 333.2 263 65.8
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 2.4e-89 332.8 269 63.2
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 3.2e-89 332.4 253 67.6
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 5.5e-89 331.6 263 65.8
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 9.3e-89 330.9 267 63.3
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.2e-88 330.5 260 64.2
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 7.9e-88 327.8 228 68.9
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.0e-87 327.4 269 62.1
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.3e-87 327.0 273 63.0
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.8e-87 326.6 264 64.0
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 2.3e-87 326.2 272 63.2
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 3.9e-87 325.5 263 63.5
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.1e-87 325.1 267 64.4
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 6.7e-87 324.7 263 64.3
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 8.7e-87 324.3 179 83.2
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.1e-86 323.9 271 60.9
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.9e-86 323.2 269 61.3
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.9e-86 323.2 228 69.3
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.9e-86 323.2 228 69.3
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.5e-86 322.8 269 61.0
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 2.5e-86 322.8 179 82.7
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 3.3e-86 322.4 256 62.1
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 3.3e-86 322.4 267 63.3
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 5.6e-86 321.6 269 62.1
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 7.4e-86 321.2 263 63.1
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 9.6e-86 320.9 185 80.0
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.6e-85 320.1 266 62.4
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 2.1e-85 319.7 178 82.0
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 2.8e-85 319.3 257 66.5
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 3.7e-85 318.9 265 62.6
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 4.8e-85 318.5 267 62.9
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 4.8e-85 318.5 267 62.9
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 6.2e-85 318.2 178 82.0
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 8.1e-85 317.8 245 64.9
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 1.8e-84 316.6 277 60.3
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 3.1e-84 315.8 179 80.4
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 4.0e-84 315.5 182 78.0
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 5.3e-84 315.1 256 61.3
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 5.3e-84 315.1 268 60.4
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 5.3e-84 315.1 178 82.6
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 1.2e-83 313.9 267 60.7
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.5e-83 313.5 267 63.7
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 2.0e-83 313.2 270 60.0
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 4.5e-83 312.0 270 60.7
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 5.8e-83 311.6 175 80.0
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 1.0e-82 310.8 267 61.0
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.7e-82 310.1 177 79.1
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 1.7e-82 310.1 176 79.5
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.8e-82 308.9 181 78.5
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 6.5e-82 308.1 260 60.4
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 6.5e-82 308.1 253 62.8
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 6.5e-82 308.1 232 65.9
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 8.4e-82 307.8 263 60.8
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 8.4e-82 307.8 263 60.8
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.4e-81 307.0 255 62.4
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.9e-81 306.6 262 59.9
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 1.9e-81 306.6 269 59.5
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 7.1e-81 304.7 197 72.1
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 9.3e-81 304.3 271 60.5
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 9.3e-81 304.3 177 78.0
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.2e-80 303.9 264 59.1
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.2e-80 303.9 181 75.7
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.2e-80 303.9 181 76.2
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 2.1e-80 303.1 234 63.2
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.5e-80 302.4 264 59.1
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 3.5e-80 302.4 278 58.3
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 4.6e-80 302.0 262 59.2
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 6.0e-80 301.6 204 71.6
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 7.9e-80 301.2 262 59.9
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 7.9e-80 301.2 173 76.9
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 1.0e-79 300.8 184 77.2
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.3e-79 300.4 211 70.6
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.3e-79 299.7 270 58.9
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 8.7e-79 297.7 233 65.2
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 8.7e-79 297.7 182 75.3
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 8.7e-79 297.7 271 59.0
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 1.1e-78 297.4 264 58.0
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 1.1e-78 297.4 174 79.3
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-78 297.0 232 65.5
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 7.4e-78 294.7 181 74.6
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 7.4e-78 294.7 275 56.7
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 7.4e-78 294.7 264 57.2
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 9.6e-78 294.3 278 56.5
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.6e-77 293.5 275 56.4
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 1.6e-77 293.5 270 59.3
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 2.1e-77 293.1 206 68.4
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 3.7e-77 292.4 271 56.8
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 8.2e-77 291.2 220 64.1
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.4e-76 290.4 226 63.3
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.4e-76 290.4 184 71.2
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.4e-76 290.4 183 72.7
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 1.4e-76 290.4 219 66.2
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 2.4e-76 289.7 182 72.5
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 2.4e-76 289.7 182 72.5
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 5.3e-76 288.5 177 74.6
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 6.9e-76 288.1 173 76.9
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.5e-75 287.0 228 62.7
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 3.4e-75 285.8 182 71.4
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 4.5e-75 285.4 248 59.3
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 4.5e-75 285.4 168 78.0
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 1.0e-74 284.3 256 57.4
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.1e-73 280.8 218 61.9
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.9e-73 280.0 185 68.6
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 3.2e-73 279.3 176 72.2
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 1.2e-72 277.3 153 86.3
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 2.3e-71 273.1 177 73.4
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.7e-69 265.8 150 82.7
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 3.7e-69 265.8 188 67.6
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 3.1e-68 262.7 244 57.0
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 3.8e-66 255.8 138 84.1
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 5.5e-65 251.9 230 58.3
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 2.7e-64 249.6 182 64.3
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 4.6e-64 248.8 144 77.1
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 5.1e-63 245.4 227 56.8
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.4e-62 242.3 275 49.5
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 7.4e-62 241.5 167 64.1
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 3.1e-60 236.1 244 54.9
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.0e-59 233.4 177 66.1
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 7.7e-59 231.5 136 77.9
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.0e-58 231.1 174 60.3
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 8.5e-58 228.0 164 61.6
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.9e-57 226.9 144 70.1
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.6e-56 223.8 152 71.1
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 2.1e-56 223.4 175 57.7
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 7.9e-56 221.5 155 68.4
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 3.9e-55 219.2 167 58.1
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 6.7e-55 218.4 264 48.5
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.7e-53 213.8 174 55.2
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 2.2e-53 213.4 264 47.7
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 1.4e-52 210.7 264 47.0
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 2.3e-47 193.4 111 79.3
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 3.1e-36 156.4 91 76.9
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.0e-34 151.4 97 70.1
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 1.7e-34 150.6 143 55.2
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.8e-31 140.6 100 67.0
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.3e-31 140.2 84 76.2
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 7.5e-30 135.2 143 51.7
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 6.3e-29 132.1 88 67.0
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 2.7e-27 126.7 213 31.9
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 1.9e-25 120.6 78 75.6
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 5.2e-23 112.5 63 79.4
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 6.8e-23 112.1 141 38.3
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 1.2e-22 111.3 65 76.9
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.7e-22 109.0 73 68.5
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 4.1e-20 102.8 67 68.7
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 2.7e-19 100.1 86 58.1
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.0e-15 86.3 52 73.1
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 4.4e-14 82.8 46 78.3
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 8.3e-13 78.6 52 67.3
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.9e-12 77.4 51 68.6
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 4.6e-11 72.8 113 46.9
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 3.9e-10 69.7 39 79.5
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.3e-09 66.6 43 69.8
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 7.3e-09 65.5 37 83.8


User provided reference genes

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